ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl10e03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_196315.1| Oryza sativa (japonica cultivar-group) putative cucumisin-like serine protease (OSJNBa0011L09.20), mRNA Length = 2322 Score = 38.2 bits (19), Expect = 1.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 15 cgccgtcctcaaggccgcgggcg 37 ||||||| ||||||||||||||| Sbjct: 1269 cgccgtcgtcaaggccgcgggcg 1291
>gb|AC092388.5| Oryza sativa chromosome 10 BAC OSJNBa0011L09 genomic sequence, complete sequence Length = 177565 Score = 38.2 bits (19), Expect = 1.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 15 cgccgtcctcaaggccgcgggcg 37 ||||||| ||||||||||||||| Sbjct: 117203 cgccgtcgtcaaggccgcgggcg 117181
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 38.2 bits (19), Expect = 1.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 15 cgccgtcctcaaggccgcgggcg 37 ||||||| ||||||||||||||| Sbjct: 12646359 cgccgtcgtcaaggccgcgggcg 12646381
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 38.2 bits (19), Expect = 1.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 cacgccgtcctcaaggccg 31 ||||||||||||||||||| Sbjct: 5717424 cacgccgtcctcaaggccg 5717406
>gb|AY111138.1| Zea mays CL58547_1 mRNA sequence Length = 1034 Score = 38.2 bits (19), Expect = 1.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 14 acgccgtcctcaaggccgc 32 ||||||||||||||||||| Sbjct: 770 acgccgtcctcaaggccgc 752
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 38.2 bits (19), Expect = 1.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 15 cgccgtcctcaaggccgcgggcg 37 ||||||| ||||||||||||||| Sbjct: 12653699 cgccgtcgtcaaggccgcgggcg 12653721
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 25 aaggccgcgggcgccgcg 42 |||||||||||||||||| Sbjct: 598219 aaggccgcgggcgccgcg 598202
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 23 tcaaggccgcgggcgccg 40 |||||||||||||||||| Sbjct: 772244 tcaaggccgcgggcgccg 772227
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 4 cacaagcgacacgccgtc 21 |||||||||||||||||| Sbjct: 3345283 cacaagcgacacgccgtc 3345300
>gb|AC124353.5| Mus musculus BAC clone RP24-481I14 from chromosome 12, complete sequence Length = 152881 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 13 cacgccgtcctcaaggcc 30 |||||||||||||||||| Sbjct: 22189 cacgccgtcctcaaggcc 22206
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 25 aaggccgcgggcgccgcg 42 |||||||||||||||||| Sbjct: 3176494 aaggccgcgggcgccgcg 3176511
>ref|NM_152437.1| Homo sapiens zinc finger protein 664 (ZNF664), mRNA Length = 5125 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 26 aggccgcgggcgccgcgc 43 |||||||||||||||||| Sbjct: 205 aggccgcgggcgccgcgc 188
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 19 gtcctcaaggccgcgggc 36 |||||||||||||||||| Sbjct: 579511 gtcctcaaggccgcgggc 579528
>gb|AY386265.1| Bovine papular stomatitis virus strain BV-AR02, complete genome Length = 134431 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 26 aggccgcgggcgccgcgc 43 |||||||||||||||||| Sbjct: 133666 aggccgcgggcgccgcgc 133683 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 26 aggccgcgggcgccgcgc 43 |||||||||||||||||| Sbjct: 766 aggccgcgggcgccgcgc 749
>gb|AC124373.4| Mus musculus BAC clone RP24-562D16 from chromosome 12, complete sequence Length = 168916 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 13 cacgccgtcctcaaggcc 30 |||||||||||||||||| Sbjct: 141114 cacgccgtcctcaaggcc 141131
>gb|AF534134.1| Mus musculus protein kinase B-alpha gene, promoter region, exons 0 through 13, and complete cds Length = 24556 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 cacgccgtcctcaaggcc 30 |||||||||||||||||| Sbjct: 2686 cacgccgtcctcaaggcc 2669
>emb|AL590639.9| Human DNA sequence from clone RP11-496H15 on chromosome 1 Contains the 3' end of the gene for retinoid binding protein 7 (CRBPIV), the 5' end of the UBE4B gene for ubiquitination factor E4B (UFD2 homolog, yeast), a pseudogene similar to part of ribosomal protein L21 (RPL21) and a pseudogene similar to part of phosphoglycerate mutase, complete sequence Length = 96075 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 26 aggccgcgggcgccgcgc 43 |||||||||||||||||| Sbjct: 34039 aggccgcgggcgccgcgc 34022
>emb|X70255.1|SLAMYALAM S.lividans of amy gene encoding alpha-amylase Length = 3055 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 18 cgtcctcaaggccgcggg 35 |||||||||||||||||| Sbjct: 1951 cgtcctcaaggccgcggg 1968
>emb|BX647762.1|HSM807908 Homo sapiens mRNA; cDNA DKFZp686M1851 (from clone DKFZp686M1851) Length = 4259 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 26 aggccgcgggcgccgcgc 43 |||||||||||||||||| Sbjct: 33 aggccgcgggcgccgcgc 16
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 25 aaggccgcgggcgccgcg 42 |||||||||||||||||| Sbjct: 2906374 aaggccgcgggcgccgcg 2906391
>gb|BC037793.2| Homo sapiens zinc finger protein 664, mRNA (cDNA clone IMAGE:4793237) Length = 1586 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 26 aggccgcgggcgccgcgc 43 |||||||||||||||||| Sbjct: 44 aggccgcgggcgccgcgc 27
>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29 Length = 248550 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 20 tcctcaaggccgcgggcg 37 |||||||||||||||||| Sbjct: 243645 tcctcaaggccgcgggcg 243662
>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29 Length = 321250 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 18 cgtcctcaaggccgcggg 35 |||||||||||||||||| Sbjct: 290470 cgtcctcaaggccgcggg 290453
>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29 Length = 314100 Score = 36.2 bits (18), Expect = 5.7 Identities = 21/22 (95%) Strand = Plus / Plus Query: 22 ctcaaggccgcgggcgccgcgc 43 ||||||||||||||||| |||| Sbjct: 247678 ctcaaggccgcgggcgcggcgc 247699
>emb|AL834266.1|HSM805298 Homo sapiens mRNA; cDNA DKFZp761B128 (from clone DKFZp761B128) Length = 5125 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 26 aggccgcgggcgccgcgc 43 |||||||||||||||||| Sbjct: 205 aggccgcgggcgccgcgc 188
>emb|CR858986.1| Pongo pygmaeus mRNA; cDNA DKFZp459B128 (from clone DKFZp459B128) Length = 4310 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 26 aggccgcgggcgccgcgc 43 |||||||||||||||||| Sbjct: 79 aggccgcgggcgccgcgc 62
>dbj|AK056034.1| Homo sapiens cDNA FLJ31472 fis, clone NT2NE2001442, highly similar to Finger protein zfOC1 Length = 1997 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 26 aggccgcgggcgccgcgc 43 |||||||||||||||||| Sbjct: 20 aggccgcgggcgccgcgc 3
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 20 tcctcaaggccgcgggcg 37 |||||||||||||||||| Sbjct: 659625 tcctcaaggccgcgggcg 659642
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 36.2 bits (18), Expect = 5.7 Identities = 21/22 (95%) Strand = Plus / Minus Query: 15 cgccgtcctcaaggccgcgggc 36 |||||||||| ||||||||||| Sbjct: 2126359 cgccgtcctcgaggccgcgggc 2126338
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 27 ggccgcgggcgccgcgcg 44 |||||||||||||||||| Sbjct: 1161214 ggccgcgggcgccgcgcg 1161231
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 28 gccgcgggcgccgcgcga 45 |||||||||||||||||| Sbjct: 1398892 gccgcgggcgccgcgcga 1398875
>gb|AC068790.36| Homo sapiens 12 BAC RP11-214K3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 198537 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 26 aggccgcgggcgccgcgc 43 |||||||||||||||||| Sbjct: 29244 aggccgcgggcgccgcgc 29227
>gb|AC016757.10| Homo sapiens BAC clone RP11-526L8 from 2, complete sequence Length = 158170 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 27 ggccgcgggcgccgcgcg 44 |||||||||||||||||| Sbjct: 78118 ggccgcgggcgccgcgcg 78135
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 14 acgccgtcctcaaggccg 31 |||||||||||||||||| Sbjct: 3984507 acgccgtcctcaaggccg 3984490
>ref|NM_211945.1| Eremothecium gossypii AGR217Cp (AGR217C), mRNA Length = 1302 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 27 ggccgcgggcgccgcgcg 44 |||||||||||||||||| Sbjct: 1104 ggccgcgggcgccgcgcg 1087
>gb|AF144091.1|AF144091 Mycobacterium smegmatis catechol 1,2-dioxygenase (catA) gene, partial cds; muconolactone isomerase (catC) and sigma factor SigH (sigH) genes, complete cds; and unknown genes Length = 2900 Score = 36.2 bits (18), Expect = 5.7 Identities = 21/22 (95%) Strand = Plus / Minus Query: 22 ctcaaggccgcgggcgccgcgc 43 ||||||||||||| |||||||| Sbjct: 742 ctcaaggccgcggccgccgcgc 721
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 26 aggccgcgggcgccgcgc 43 |||||||||||||||||| Sbjct: 2684746 aggccgcgggcgccgcgc 2684729
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 27 ggccgcgggcgccgcgcg 44 |||||||||||||||||| Sbjct: 1917080 ggccgcgggcgccgcgcg 1917097
>dbj|D32254.1|STMSAM Streptomyces coelicolor DNA for aspartate aminotransferase,ribosomal protein, partial and complete cds Length = 2981 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 20 tcctcaaggccgcgggcg 37 |||||||||||||||||| Sbjct: 2488 tcctcaaggccgcgggcg 2505
>dbj|AB005916.1| Streptomyces lividans DNA for ribosomal protein L11, complete cds Length = 435 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 20 tcctcaaggccgcgggcg 37 |||||||||||||||||| Sbjct: 245 tcctcaaggccgcgggcg 262
>dbj|AB005915.1| Streptomyces coelicolor DNA for ribosomal protein L11, complete cds Length = 435 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 20 tcctcaaggccgcgggcg 37 |||||||||||||||||| Sbjct: 245 tcctcaaggccgcgggcg 262
>dbj|AB070950.1| Streptomyces avermitilis peptide-1 biosynthetic gene cluster Length = 21391 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 14 acgccgtcctcaaggccg 31 |||||||||||||||||| Sbjct: 11685 acgccgtcctcaaggccg 11702
>dbj|AB006962.1| Streptomyces violaceoruber rplK gene for ribosomal protein L11, complete cds Length = 435 Score = 36.2 bits (18), Expect = 5.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 20 tcctcaaggccgcgggcg 37 |||||||||||||||||| Sbjct: 245 tcctcaaggccgcgggcg 262 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 199,117 Number of Sequences: 3902068 Number of extensions: 199117 Number of successful extensions: 57064 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53741 Number of HSP's gapped (non-prelim): 3323 length of query: 46 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 26 effective length of database: 17,155,003,908 effective search space: 446030101608 effective search space used: 446030101608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)
