ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl10e02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_462832.1| Oryza sativa (japonica cultivar-group), predic... 151 1e-33
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 151 1e-33
3dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic D... 151 1e-33
4dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic D... 151 1e-33
5gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome... 92 9e-16
6gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome... 92 9e-16
7dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 92 9e-16
8dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 9e-16
9dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 9e-16
10dbj|AK072825.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 9e-16
11dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 9e-16
12gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 92 9e-16
13ref|XM_956946.1| Neurospora crassa OR74A hypothetical protein (N... 44 0.20
14ref|XM_330944.1| Neurospora crassa OR74A hypothetical protein (N... 44 0.20
15emb|X80052.1|NCFOX2 N.crassa fox-2 gene 44 0.20
16gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 3.1
17gb|CP000264.1| Jannaschia sp. CCS1, complete genome 40 3.1 
>ref|XM_462832.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3111

 Score =  151 bits (76), Expect = 1e-33
 Identities = 97/104 (93%)
 Strand = Plus / Plus

                                                                       
Query: 138 cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 197
           |||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct: 246 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 305

                                                       
Query: 198 cgccatggcgaatgagatcaaggcggatctggagggcagcgacg 241
           |||||||||   |||||||||||||||||| |||||||||||||
Sbjct: 306 cgccatggccggtgagatcaaggcggatctcgagggcagcgacg 349
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  151 bits (76), Expect = 1e-33
 Identities = 97/104 (93%)
 Strand = Plus / Minus

                                                                            
Query: 138      cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 197
                |||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct: 10025978 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 10025919

                                                            
Query: 198      cgccatggcgaatgagatcaaggcggatctggagggcagcgacg 241
                |||||||||   |||||||||||||||||| |||||||||||||
Sbjct: 10025918 cgccatggccggtgagatcaaggcggatctcgagggcagcgacg 10025875
to top
>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1085F09
          Length = 132713

 Score =  151 bits (76), Expect = 1e-33
 Identities = 97/104 (93%)
 Strand = Plus / Minus

                                                                          
Query: 138    cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 197
              |||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct: 106260 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 106201

                                                          
Query: 198    cgccatggcgaatgagatcaaggcggatctggagggcagcgacg 241
              |||||||||   |||||||||||||||||| |||||||||||||
Sbjct: 106200 cgccatggccggtgagatcaaggcggatctcgagggcagcgacg 106157
to top
>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0036E02
          Length = 145931

 Score =  151 bits (76), Expect = 1e-33
 Identities = 97/104 (93%)
 Strand = Plus / Minus

                                                                          
Query: 138    cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 197
              |||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct: 120471 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 120412

                                                          
Query: 198    cgccatggcgaatgagatcaaggcggatctggagggcagcgacg 241
              |||||||||   |||||||||||||||||| |||||||||||||
Sbjct: 120411 cgccatggccggtgagatcaaggcggatctcgagggcagcgacg 120368
to top
>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0063D09 map S1559, complete sequence
          Length = 190721

 Score = 91.7 bits (46), Expect = 9e-16
 Identities = 82/94 (87%)
 Strand = Plus / Minus

                                                                         
Query: 148   gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 207
             |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 21432 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 21373

                                               
Query: 208   aatgagatcaaggcggatctggagggcagcgacg 241
             || ||||||||||| || || |||||||||||||
Sbjct: 21372 aacgagatcaaggccgacctcgagggcagcgacg 21339
to top
>gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055G24
              map S20116S, complete sequence
          Length = 174210

 Score = 91.7 bits (46), Expect = 9e-16
 Identities = 82/94 (87%)
 Strand = Plus / Minus

                                                                          
Query: 148    gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 207
              |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 170897 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 170838

                                                
Query: 208    aatgagatcaaggcggatctggagggcagcgacg 241
              || ||||||||||| || || |||||||||||||
Sbjct: 170837 aacgagatcaaggccgacctcgagggcagcgacg 170804
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 91.7 bits (46), Expect = 9e-16
 Identities = 82/94 (87%)
 Strand = Plus / Minus

                                                                           
Query: 148     gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 207
               |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 3653760 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 3653701

                                                 
Query: 208     aatgagatcaaggcggatctggagggcagcgacg 241
               || ||||||||||| || || |||||||||||||
Sbjct: 3653700 aacgagatcaaggccgacctcgagggcagcgacg 3653667
to top
>dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002G07, full
           insert sequence
          Length = 3332

 Score = 91.7 bits (46), Expect = 9e-16
 Identities = 82/94 (87%)
 Strand = Plus / Plus

                                                                       
Query: 148 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 207
           |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 111 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 170

                                             
Query: 208 aatgagatcaaggcggatctggagggcagcgacg 241
           || ||||||||||| || || |||||||||||||
Sbjct: 171 aacgagatcaaggccgacctcgagggcagcgacg 204
to top
>dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002A09, full
           insert sequence
          Length = 3332

 Score = 91.7 bits (46), Expect = 9e-16
 Identities = 82/94 (87%)
 Strand = Plus / Plus

                                                                       
Query: 148 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 207
           |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 111 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 170

                                             
Query: 208 aatgagatcaaggcggatctggagggcagcgacg 241
           || ||||||||||| || || |||||||||||||
Sbjct: 171 aacgagatcaaggccgacctcgagggcagcgacg 204
to top
>dbj|AK072825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136B14, full
           insert sequence
          Length = 1667

 Score = 91.7 bits (46), Expect = 9e-16
 Identities = 82/94 (87%)
 Strand = Plus / Plus

                                                                       
Query: 148 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 207
           |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 75  gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 134

                                             
Query: 208 aatgagatcaaggcggatctggagggcagcgacg 241
           || ||||||||||| || || |||||||||||||
Sbjct: 135 aacgagatcaaggccgacctcgagggcagcgacg 168
to top
>dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F21, full
           insert sequence
          Length = 3363

 Score = 91.7 bits (46), Expect = 9e-16
 Identities = 82/94 (87%)
 Strand = Plus / Plus

                                                                       
Query: 148 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 207
           |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 142 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 201

                                             
Query: 208 aatgagatcaaggcggatctggagggcagcgacg 241
           || ||||||||||| || || |||||||||||||
Sbjct: 202 aacgagatcaaggccgacctcgagggcagcgacg 235
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 91.7 bits (46), Expect = 9e-16
 Identities = 82/94 (87%)
 Strand = Plus / Minus

                                                                           
Query: 148     gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 207
               |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| 
Sbjct: 3662454 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 3662395

                                                 
Query: 208     aatgagatcaaggcggatctggagggcagcgacg 241
               || ||||||||||| || || |||||||||||||
Sbjct: 3662394 aacgagatcaaggccgacctcgagggcagcgacg 3662361
to top
>ref|XM_956946.1| Neurospora crassa OR74A hypothetical protein (NCU08828.1) partial
            mRNA
          Length = 2685

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 182  tcgacaagggctccgccgccat 203
            ||||||||||||||||||||||
Sbjct: 2162 tcgacaagggctccgccgccat 2183
to top
>ref|XM_330944.1| Neurospora crassa OR74A hypothetical protein (NCU08828.1) partial
            mRNA
          Length = 2685

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 182  tcgacaagggctccgccgccat 203
            ||||||||||||||||||||||
Sbjct: 2162 tcgacaagggctccgccgccat 2183
to top
>emb|X80052.1|NCFOX2 N.crassa fox-2 gene
          Length = 3401

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 182  tcgacaagggctccgccgccat 203
            ||||||||||||||||||||||
Sbjct: 2665 tcgacaagggctccgccgccat 2686
to top
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    cgccgtcgccctccggcgcg 128
              ||||||||||||||||||||
Sbjct: 612231 cgccgtcgccctccggcgcg 612250
to top
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 213     gatcaaggcggatctggagg 232
               ||||||||||||||||||||
Sbjct: 1763887 gatcaaggcggatctggagg 1763868


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,130,737
Number of Sequences: 3902068
Number of extensions: 1130737
Number of successful extensions: 20668
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20534
Number of HSP's gapped (non-prelim): 134
length of query: 241
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 219
effective length of database: 17,147,199,772
effective search space: 3755236750068
effective search space used: 3755236750068
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top