>IF2_THEFY (Q47RV1) Translation initiation factor IF-2|
          Length = 955

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -1

Query: 301 GEPRALAHGGPLPAQRPAVRHDPLSRLHDLPR-PAAARPVMHGRAG 167
           G P + A G P P  RP  R  P++     P  P  ARP    R+G
Sbjct: 229 GRPGSSAGGPPRPVPRPGPRPSPMNMPASRPTPPGGARPSTSSRSG 274

>ICP0_HHV2H (P28284) Trans-acting transcriptional protein ICP0 (VMW118 protein)|
          Length = 825

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = -1

Query: 304 LGEPRALAHGGPLPAQRPAVRHDPLSRLHDLPRPAAARPVMHGRAGSRSWLAASRIGGED 125
           +GE  A A G   PA++P    +P   + D P P+  RP   G     S  +A    G  
Sbjct: 338 VGEDAAAAEGRTPPARQPRAAQEPPIVISDSPPPSPRRPAGPGPLSFVSSSSAQVSSGPG 397

Query: 124 G 122
           G
Sbjct: 398 G 398

>ADRB1_CANFA (P79148) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1|
           adrenoreceptor)
          Length = 473

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 18/37 (48%), Positives = 20/37 (54%)
 Frame = -1

Query: 271 PLPAQRPAVRHDPLSRLHDLPRPAAARPVMHGRAGSR 161
           P PA  PA    P S     PRPAAA P+ +GR G R
Sbjct: 275 PPPAPAPAPPPAPGS-----PRPAAAAPLANGRVGRR 306

>5E5_RAT (Q63003) 5E5 antigen|
          Length = 825

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -1

Query: 253 PAVRHDPLSRLHDLPRPAAARPVMHGRAGSRSWLAASRIGG 131
           PA+   P +  H +P P  A   + GR    SW    R GG
Sbjct: 539 PALAGAPTAHAHAVPGPGPAAATLGGRGRRGSWRGGRRGGG 579

>CRF_SHEEP (P01142) Corticoliberin precursor (Corticotropin-releasing factor)|
           (CRF) (Corticotropin-releasing hormone)
           (Endorpholiberin)
          Length = 190

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 292 RALAHGGPLPAQRPAVRH-DPLSRLHDLPRP 203
           RAL   GP+P  R A +H  PLS    LP+P
Sbjct: 23  RALLSRGPIPGARQASQHPQPLSFFQPLPQP 53

>Y4ZA_RHISN (P55728) Hypothetical 32.9 kDa protein y4zA|
          Length = 295

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 258 WAGSGPPCARARGSPSPCRRR 320
           W  + P  + ARG+P+PC RR
Sbjct: 221 WLEADPALSAARGAPAPCERR 241

>RELA_STRAT (O85709) GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP|
           3'-pyrophosphotransferase) (ppGpp synthetase I)
           ((P)ppGpp synthetase)
          Length = 841

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
 Frame = -1

Query: 298 EPRALAH--GGPL------PAQRPAVRHDPLSRLHDLPRPAAARPVMHGRAGSRSWLAAS 143
           EP A A   GGP+      PA +PA R  P     + PRP   R    G+  +RS  +++
Sbjct: 22  EPAAHAQDGGGPVEHDRSAPADKPAERTRPKPAPPERPRPPPPRARAAGQPAARSGGSSN 81

Query: 142 RI 137
           R+
Sbjct: 82  RV 83

>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)|
          Length = 1386

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 102 YPPLSVQPSSPPILLAASQDRLPARPCI 185
           YPP S QP  PP   + S+ +LP  P I
Sbjct: 176 YPPSSAQPYLPPAQPSPSKPQLPPPPSI 203

>IE63_HHV11 (P10238) Transcriptional regulator IE63 (VMW63) (ICP27)|
          Length = 512

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
 Frame = -1

Query: 313 RHGLGEPRALAH------GGPLPAQRPAVRHDPLSRLHDLPRPAAARPVMHGRAGSRSWL 152
           R G  +P+   H      G   P+  P      ++RL   P P  A+P   GR G R   
Sbjct: 91  RQGPNDPQPAPHSVWSRLGARRPSCSPEQHGGKVARLQ--PPPTKAQPARGGRRGRRRGR 148

Query: 151 AASRIGGEDGWTD 113
                G  DG +D
Sbjct: 149 GRGGPGAADGLSD 161

>IE63_HHV1E (P36295) Transcriptional regulator IE63 (VMW63) (ICP27)|
          Length = 511

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
 Frame = -1

Query: 313 RHGLGEPRALAH------GGPLPAQRPAVRHDPLSRLHDLPRPAAARPVMHGRAGSRSWL 152
           R G  +P+   H      G   P+  P      ++RL   P P  A+P   GR G R   
Sbjct: 91  RQGPNDPQPAPHSVWSRLGARRPSCSPEQHGGKVARLQ--PPPTKAQPARGGRRGRRRGR 148

Query: 151 AASRIGGEDGWTD 113
                G  DG +D
Sbjct: 149 GRGGPGAADGLSD 161

>YQ5B_CAEEL (Q09254) Hypothetical protein C16C10.11|
          Length = 154

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 17/47 (36%), Positives = 19/47 (40%)
 Frame = -1

Query: 319 RRRHGLGEPRALAHGGPLPAQRPAVRHDPLSRLHDLPRPAAARPVMH 179
           RRR     P A     P PA + +    P       PRPAAA P  H
Sbjct: 3   RRRTASPSPSAPVRSAPRPAAQSSFAAPP-------PRPAAAAPAYH 42

>RIMB1_MOUSE (Q7TNF8) Peripheral-type benzodiazepine receptor-associated protein 1|
            (PRAX-1) (Peripheral benzodiazepine receptor-interacting
            protein) (PBR-IP) (RIM-binding protein 1) (RIM-BP1)
          Length = 1846

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -1

Query: 316  RRHGLGEPRALAHGGPLPAQRPAVRHDPLSRLHDLPRP-AAARPVMHGRAGSRSWLAASR 140
            RR G G P  L +      +RP    +  SRL     P A+ARPV     GS   +  +R
Sbjct: 1396 RRRGGGSPEKLPN-----RKRPQDPREHCSRLLGNGGPQASARPVPPRERGSLPVIEGTR 1450

Query: 139  IGGEDG 122
            +G E G
Sbjct: 1451 VGQEPG 1456

>CWC22_YARLI (Q6C8C5) Pre-mRNA-splicing factor CWC22|
          Length = 954

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 20/55 (36%), Positives = 22/55 (40%)
 Frame = -1

Query: 319 RRRHGLGEPRALAHGGPLPAQRPAVRHDPLSRLHDLPRPAAARPVMHGRAGSRSW 155
           RRR G+G  R      P    RP  R    SR   L R     P   GR  SRS+
Sbjct: 802 RRRRGVGSRRRSLTRSPGSRSRPRSRPRSRSRSRSLSRDRTGSP-PRGRRRSRSY 855

>ICP0_BHV1K (P29836) Trans-acting transcriptional protein ICP0 (P135 protein)|
           (IER 2.9/ER2.6)
          Length = 676

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 12/75 (16%)
 Frame = -1

Query: 322 ERRRHGLGE---PRALAHG--------GPLPAQRPAVRHDPLSRLHDLPRPAAARPVMHG 176
           ERR   LGE   PR  A           P PA  PA    P+S + DL   A ARP    
Sbjct: 445 ERRAKLLGEAGPPRVQARRRRRTELDRAPTPAPAPAPAPAPISTMIDLTANAPARPADPA 504

Query: 175 RAGSRS-WLAASRIG 134
            A +    LA ++IG
Sbjct: 505 PAAALGPALAGAQIG 519

>UVRA_XANCP (Q8PBH3) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 988

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -1

Query: 304 LGEPRALAHGGPLPAQRPAVRHDPLSRLHDLPRPAAARPVMHGRAGSRS 158
           +G+PR   HG PL AQ  +   D +  L    R     PV+  R G  +
Sbjct: 117 VGQPRCPDHGFPLEAQTVSQMVDHMLTLDPEQRYMLLAPVIRDRKGEHA 165

>XA1_XENLA (P23507) XA-1 protein precursor|
          Length = 198

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 2   PRPIHSRIAHQFQSAEEKRKGKDRE 76
           PRP HS  AH   S+EEKR    +E
Sbjct: 169 PRPGHSTSAHNDNSSEEKRPKHGQE 193

>TRUD_XANAC (Q8PLR6) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine|
           isomerase D) (tRNA pseudouridylate synthase D)
          Length = 369

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = -1

Query: 271 PLPAQRPAVRHDPLSRLHDLPRPAAARPVMHGRAGSRSW 155
           P P  R  +RHD  S L    R A    V+  R    SW
Sbjct: 192 PAPTSRRRLRHDQRSMLLSAARSALFNRVLGARVAQGSW 230


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.120    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,895,911
Number of Sequences: 219361
Number of extensions: 487247
Number of successful extensions: 1497
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1496
length of database: 80,573,946
effective HSP length: 82
effective length of database: 62,586,344
effective search space used: 1502072256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)