>VPS35_MOUSE (Q9EQH3) Vacuolar protein sorting 35 (Vesicle protein sorting 35)|
           (Maternal-embryonic 3)
          Length = 796

 Score = 75.9 bits (185), Expect = 2e-14
 Identities = 37/71 (52%), Positives = 48/71 (67%)
 Frame = +3

Query: 150 DDEERWLAEGIAGVQQNAFYMHRALDSNNLKDALKYSAQMLSELRTSRLSPHKYYELYMR 329
           D++E+ L E I  V+  +F M R LD N L DALK+++ ML ELRTS LSP  YYELYM 
Sbjct: 10  DEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSPKSYYELYMA 69

Query: 330 AFDEMRKLEMF 362
             DE+  LE++
Sbjct: 70  ISDELHYLEVY 80

>VPS35_HUMAN (Q96QK1) Vacuolar protein sorting 35 (Vesicle protein sorting 35)|
           (hVPS35) (Maternal-embryonic 3)
          Length = 796

 Score = 75.9 bits (185), Expect = 2e-14
 Identities = 37/71 (52%), Positives = 48/71 (67%)
 Frame = +3

Query: 150 DDEERWLAEGIAGVQQNAFYMHRALDSNNLKDALKYSAQMLSELRTSRLSPHKYYELYMR 329
           D++E+ L E I  V+  +F M R LD N L DALK+++ ML ELRTS LSP  YYELYM 
Sbjct: 10  DEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSPKSYYELYMA 69

Query: 330 AFDEMRKLEMF 362
             DE+  LE++
Sbjct: 70  ISDELHYLEVY 80

>VPS35_YEAST (P34110) Vacuolar protein sorting-associated protein VPS35|
          Length = 944

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 25/61 (40%), Positives = 39/61 (63%)
 Frame = +3

Query: 180 IAGVQQNAFYMHRALDSNNLKDALKYSAQMLSELRTSRLSPHKYYELYMRAFDEMRKLEM 359
           IA ++Q    M+R L  + L ++L++++ ML+ELR   LSP KYYELY+  FD +  L  
Sbjct: 11  IAVIKQRTALMNRCLSQHKLMESLQHTSIMLTELRNPNLSPKKYYELYVIIFDSLTNLST 70

Query: 360 F 362
           +
Sbjct: 71  Y 71

>NEMO_MOUSE (O88522) NF-kappa-B essential modulator (NEMO) (NF-kappa-B|
           essential modifier) (Inhibitor of nuclear factor kappa-B
           kinase gamma subunit) (IkB kinase gamma subunit)
           (I-kappa-B kinase gamma) (IKK-gamma) (IKKG) (IkB
           kinase-associated protein 1)
          Length = 412

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 15/96 (15%)
 Frame = +3

Query: 111 NTAAARMLPDGGGDDEERWLAEG----------IAGVQQNAFYMHRALDSNN-LKDALKY 257
           N  +  + P GG  +++  L E           +   Q     + R L+ N  L+DA++ 
Sbjct: 8   NQLSETVQPSGGPAEDQDMLGEESSLGKPAMLHLPSEQGTPETLQRCLEENQELRDAIRQ 67

Query: 258 SAQML----SELRTSRLSPHKYYELYMRAFDEMRKL 353
           S QML     EL   ++S  +  E  M  F E RKL
Sbjct: 68  SNQMLRERCEELLHFQVSQREEKEFLMCKFQEARKL 103

>VPS35_SCHPO (O74552) Vacuolar protein sorting-associated protein vps35|
          Length = 785

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 279 LRTSRLSPHKYYELYMRAFDEMRKL 353
           +R S L+P +YYELYM   + +R L
Sbjct: 1   MRNSALTPKQYYELYMFNMESLRLL 25

>AMPO_MOUSE (Q8BXQ6) Aminopeptidase O (EC 3.4.11.-) (AP-O)|
          Length = 817

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
 Frame = +3

Query: 141 GGGDDEERWLAEGIAGVQQNAFYM-------HRALDSNNLKDALKYSAQMLSELRTS 290
           G  D  E WL+EG A   ++ F+        H AL+   L+  L++  ++  ELR S
Sbjct: 492 GARDWTEEWLSEGFATHLEDIFWAEAQQLPPHEALEQQELRACLRWH-RLQDELRNS 547

>YDCO_ECOLI (P76103) Inner membrane protein ydcO|
          Length = 391

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 114 TAAARMLPDGGGDDEERWLAEGIAGV 191
           TAA    P+   D ++RWLA  +AG+
Sbjct: 271 TAAICQSPEAHPDKDQRWLAAAVAGI 296

>FUS_TRTV (P24614) Fusion glycoprotein F0 precursor [Contains: Fusion|
           glycoprotein F2; Fusion glycoprotein F1]
          Length = 538

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 19/46 (41%), Positives = 25/46 (54%)
 Frame = +2

Query: 212 APRPRLEQPQGRAQVLGADALGAAHLQALPAQVLRAIHEGVRRDAE 349
           A   RL  P+ R  VLGA ALG A   A+ A V  A+ + +R + E
Sbjct: 90  AKESRLSSPRRRRFVLGAIALGVATAAAVTAGV--ALAKTIRLEGE 133


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.130    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,338,915
Number of Sequences: 219361
Number of extensions: 395250
Number of successful extensions: 1444
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1444
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)