ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl10c04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_480436.1| Oryza sativa (japonica cultivar-group), mRNA 151 2e-33
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 151 2e-33
3dbj|AP004656.3| Oryza sativa (japonica cultivar-group) genomic D... 151 2e-33
4dbj|AK099689.1| Oryza sativa (japonica cultivar-group) cDNA clon... 151 2e-33
5dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
6dbj|AP006171.2| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
7dbj|AP005558.3| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
8dbj|AK065725.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 3e-07
9gb|DQ226858.1| Boechera divaricarpa isolate SLW-C-E05 mRNA sequence 46 0.074
10ref|XM_677215.1| Aspergillus nidulans FGSC A4 hypothetical prote... 44 0.29
11ref|XM_466261.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.2
12gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 42 1.2
13emb|BX067988.1|CNS09OMG Single read from an extremity of a full-... 42 1.2
14emb|BX067987.1|CNS09OMF Single read from an extremity of a full-... 42 1.2
15emb|BX049757.1|CNS09AK1 Single read from an extremity of a full-... 42 1.2
16emb|BX049756.1|CNS09AK0 Single read from an extremity of a full-... 42 1.2
17dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
18dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
19dbj|AP005458.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
20dbj|AP005456.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
21dbj|AP005883.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
22ref|XM_566427.1| Anopheles gambiae str. PEST ENSANGP00000016923 ... 42 1.2
23dbj|AK069227.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
24dbj|AK063099.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
25emb|BX470073.8| Zebrafish DNA sequence from clone DKEY-239D21 in... 42 1.2
26emb|BX005081.6| Zebrafish DNA sequence from clone CH211-69M16 in... 42 1.2
27dbj|D38214.1|STMCTS Streptomyces aureofaciens cts4, cts6 and cts... 42 1.2
28gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 4.6
29gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 4.6
30gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 4.6
31gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 4.6
32gb|AC158612.7| Mus musculus 10 BAC RP23-39I3 (Roswell Park Cance... 40 4.6
33gb|AC158603.6| Mus musculus 10 BAC RP24-466C12 (Roswell Park Can... 40 4.6
34emb|CR688180.2|CNS0FTY8 Tetraodon nigroviridis full-length cDNA 40 4.6
35emb|BX640449.1| Bordetella bronchiseptica strain RB50, complete ... 40 4.6
36emb|BX640434.1| Bordetella parapertussis strain 12822, complete ... 40 4.6
37emb|BX640411.1| Bordetella pertussis strain Tohama I, complete g... 40 4.6
38emb|AJ543650.1|RSP543650 Rhodobacter sphaeroides smc gene 40 4.6
39gb|AC113336.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 4.6
40gb|AE005705.1| Caulobacter crescentus CB15 section 31 of 359 of ... 40 4.6
41dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
42dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
43dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
44dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
45gb|AC007433.16|AC007433 Mus musculus chromosome 10, clone RP21-3... 40 4.6
46gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic ... 40 4.6
47dbj|AB166747.1| Mus musculus Trpm2 mRNA for transient receptor p... 40 4.6
48gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genom... 40 4.6
49gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 4.6
50dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 4.6
51dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 40 4.6
52dbj|AP004810.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
53dbj|AP005125.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
54dbj|AK109557.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.6
55dbj|AK101720.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.6
56emb|AJ322736.1|HSA322736 Homo sapiens genomic sequence surroundi... 40 4.6
57dbj|AK058589.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.6
58dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complet... 40 4.6
59gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.6
60gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.6
61emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa... 40 4.6
62gb|AF019407.1|AF019407 Caulobacter crescentus GTP-binding protei... 40 4.6
63emb|AL773585.7| Mouse DNA sequence from clone RP23-16D18 on chro... 40 4.6
64dbj|D55717.1| Porcine rotavirus mRNA for RGD-containing collagen... 40 4.6 
>ref|XM_480436.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3078

 Score =  151 bits (76), Expect = 2e-33
 Identities = 100/108 (92%)
 Strand = Plus / Plus

                                                                       
Query: 229 gagctcaccttcaactgcaagcccatcatcaccgagctcaccatcatcgcgggccagcac 288
           |||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 303 gagctcacgttcaactgcaagcccatcatcaccgagctcaccatcatcgccgggcagcac 362

                                                           
Query: 289 gcagcgctcgctgctaggggcatcgccgacgccatctgcgcccgcatc 336
           || || ||||| || ||||| |||||||||||||||||||||||||||
Sbjct: 363 gcggccctcgccgcgagggggatcgccgacgccatctgcgcccgcatc 410
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  151 bits (76), Expect = 2e-33
 Identities = 100/108 (92%)
 Strand = Plus / Minus

                                                                           
Query: 229     gagctcaccttcaactgcaagcccatcatcaccgagctcaccatcatcgcgggccagcac 288
               |||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 5121478 gagctcacgttcaactgcaagcccatcatcaccgagctcaccatcatcgccgggcagcac 5121419

                                                               
Query: 289     gcagcgctcgctgctaggggcatcgccgacgccatctgcgcccgcatc 336
               || || ||||| || ||||| |||||||||||||||||||||||||||
Sbjct: 5121418 gcggccctcgccgcgagggggatcgccgacgccatctgcgcccgcatc 5121371
to top
>dbj|AP004656.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0020B10
          Length = 136175

 Score =  151 bits (76), Expect = 2e-33
 Identities = 100/108 (92%)
 Strand = Plus / Minus

                                                                         
Query: 229   gagctcaccttcaactgcaagcccatcatcaccgagctcaccatcatcgcgggccagcac 288
             |||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 71242 gagctcacgttcaactgcaagcccatcatcaccgagctcaccatcatcgccgggcagcac 71183

                                                             
Query: 289   gcagcgctcgctgctaggggcatcgccgacgccatctgcgcccgcatc 336
             || || ||||| || ||||| |||||||||||||||||||||||||||
Sbjct: 71182 gcggccctcgccgcgagggggatcgccgacgccatctgcgcccgcatc 71135
to top
>dbj|AK099689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073B17, full
           insert sequence
          Length = 3320

 Score =  151 bits (76), Expect = 2e-33
 Identities = 100/108 (92%)
 Strand = Plus / Plus

                                                                       
Query: 229 gagctcaccttcaactgcaagcccatcatcaccgagctcaccatcatcgcgggccagcac 288
           |||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 303 gagctcacgttcaactgcaagcccatcatcaccgagctcaccatcatcgccgggcagcac 362

                                                           
Query: 289 gcagcgctcgctgctaggggcatcgccgacgccatctgcgcccgcatc 336
           || || ||||| || ||||| |||||||||||||||||||||||||||
Sbjct: 363 gcggccctcgccgcgagggggatcgccgacgccatctgcgcccgcatc 410
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                           
Query: 220      gccctcgccgagctcaccttcaactgcaagcccatcatcaccgagctcaccatcatcgc 278
                |||||||  |||||||||||||||| |||||||||||||||| | ||||||||||||||
Sbjct: 22270861 gccctcggggagctcaccttcaactccaagcccatcatcaccaacctcaccatcatcgc 22270803
to top
>dbj|AP006171.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0070E11
          Length = 142855

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                        
Query: 220   gccctcgccgagctcaccttcaactgcaagcccatcatcaccgagctcaccatcatcgc 278
             |||||||  |||||||||||||||| |||||||||||||||| | ||||||||||||||
Sbjct: 90759 gccctcggggagctcaccttcaactccaagcccatcatcaccaacctcaccatcatcgc 90701
to top
>dbj|AP005558.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1155_H10
          Length = 140475

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                        
Query: 220   gccctcgccgagctcaccttcaactgcaagcccatcatcaccgagctcaccatcatcgc 278
             |||||||  |||||||||||||||| |||||||||||||||| | ||||||||||||||
Sbjct: 32869 gccctcggggagctcaccttcaactccaagcccatcatcaccaacctcaccatcatcgc 32811
to top
>dbj|AK065725.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013035O15, full
           insert sequence
          Length = 4175

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                       
Query: 235 accttcaactgcaagcccatcatcaccgagctcaccatcatcgc 278
           |||||||||| |||||||||||||||| | ||||||||||||||
Sbjct: 445 accttcaactccaagcccatcatcaccaacctcaccatcatcgc 488
to top
>gb|DQ226858.1| Boechera divaricarpa isolate SLW-C-E05 mRNA sequence
          Length = 243

 Score = 46.1 bits (23), Expect = 0.074
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 100 tcctccgccgctgctgcagcccc 122
           |||||||||||||||||||||||
Sbjct: 102 tcctccgccgctgctgcagcccc 80
to top
>ref|XM_677215.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN9038.2), mRNA
          Length = 1329

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 177  agaggagccgaaggcggccgcg 198
            ||||||||||||||||||||||
Sbjct: 1065 agaggagccgaaggcggccgcg 1086
to top
>ref|XM_466261.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 873

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 155 cgcggctgcgcgaggaggcgg 175
           |||||||||||||||||||||
Sbjct: 757 cgcggctgcgcgaggaggcgg 777
to top
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
          Length = 384518

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 156    gcggctgcgcgaggaggcggg 176
              |||||||||||||||||||||
Sbjct: 286728 gcggctgcgcgaggaggcggg 286708
to top
>emb|BX067988.1|CNS09OMG Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAC52AA01 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 721

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 103 tccgccgctgctgcagcccca 123
           |||||||||||||||||||||
Sbjct: 661 tccgccgctgctgcagcccca 641
to top
>emb|BX067987.1|CNS09OMF Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC52AA01 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 948

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 103 tccgccgctgctgcagcccca 123
           |||||||||||||||||||||
Sbjct: 575 tccgccgctgctgcagcccca 595
to top
>emb|BX049757.1|CNS09AK1 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAC25DD06 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 798

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 103 tccgccgctgctgcagcccca 123
           |||||||||||||||||||||
Sbjct: 660 tccgccgctgctgcagcccca 640
to top
>emb|BX049756.1|CNS09AK0 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC25DD06 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 955

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 103 tccgccgctgctgcagcccca 123
           |||||||||||||||||||||
Sbjct: 602 tccgccgctgctgcagcccca 622
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 188      aggcggccgcggtggtgggcg 208
                |||||||||||||||||||||
Sbjct: 21493749 aggcggccgcggtggtgggcg 21493769



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 188      aggcggccgcggtggtgggc 207
                ||||||||||||||||||||
Sbjct: 20052876 aggcggccgcggtggtgggc 20052857
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 155      cgcggctgcgcgaggaggcgg 175
                |||||||||||||||||||||
Sbjct: 21332152 cgcggctgcgcgaggaggcgg 21332172
to top
>dbj|AP005458.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0567G03
          Length = 196834

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 188   aggcggccgcggtggtgggcg 208
             |||||||||||||||||||||
Sbjct: 50933 aggcggccgcggtggtgggcg 50953
to top
>dbj|AP005456.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0513E02
          Length = 141477

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 188    aggcggccgcggtggtgggcg 208
              |||||||||||||||||||||
Sbjct: 128249 aggcggccgcggtggtgggcg 128269
to top
>dbj|AP005883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0435E12
          Length = 143188

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 155    cgcggctgcgcgaggaggcgg 175
              |||||||||||||||||||||
Sbjct: 114687 cgcggctgcgcgaggaggcgg 114707
to top
>ref|XM_566427.1| Anopheles gambiae str. PEST ENSANGP00000016923
           (ENSANGG00000014434), partial mRNA
          Length = 1155

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 103 tccgccgctgctgcagcccca 123
           |||||||||||||||||||||
Sbjct: 392 tccgccgctgctgcagcccca 412
to top
>dbj|AK069227.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023018C03, full
           insert sequence
          Length = 984

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 188 aggcggccgcggtggtgggcg 208
           |||||||||||||||||||||
Sbjct: 382 aggcggccgcggtggtgggcg 402
to top
>dbj|AK063099.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-C05, full
           insert sequence
          Length = 958

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 188 aggcggccgcggtggtgggcg 208
           |||||||||||||||||||||
Sbjct: 375 aggcggccgcggtggtgggcg 395
to top
>emb|BX470073.8| Zebrafish DNA sequence from clone DKEY-239D21 in linkage group 20,
              complete sequence
          Length = 146568

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 178    gaggagccgaaggcggccgcggtgg 202
              |||||||||||| ||||||||||||
Sbjct: 137261 gaggagccgaagccggccgcggtgg 137285
to top
>emb|BX005081.6| Zebrafish DNA sequence from clone CH211-69M16 in linkage group 7,
             complete sequence
          Length = 168607

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 178   gaggagccgaaggcggccgcggtgg 202
             |||||||||||| ||||||||||||
Sbjct: 93392 gaggagccgaagccggccgcggtgg 93368
to top
>dbj|D38214.1|STMCTS Streptomyces aureofaciens cts4, cts6 and cts8 genes, complete cds
          Length = 4422

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 209  tctacaaggaggccctcgccgagctcacc 237
            |||||||||||||| ||| ||||||||||
Sbjct: 4013 tctacaaggaggccttcgacgagctcacc 4041
to top
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 264    gctcaccatcatcgcgggcc 283
              ||||||||||||||||||||
Sbjct: 999125 gctcaccatcatcgcgggcc 999106
to top
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 182    agccgaaggcggccgcggtg 201
              ||||||||||||||||||||
Sbjct: 350819 agccgaaggcggccgcggtg 350838
to top
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 150     ccgcgcgcggctgcgcgagg 169
               ||||||||||||||||||||
Sbjct: 2624483 ccgcgcgcggctgcgcgagg 2624464



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 149     tccgcgcgcggctgcgcgag 168
               ||||||||||||||||||||
Sbjct: 1219991 tccgcgcgcggctgcgcgag 1220010
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 164      gcgaggaggcgggagaggagccgaaggcggccgcgg 199
                |||| ||||||||||||||| | |||||||| ||||
Sbjct: 34048201 gcgacgaggcgggagaggaggcaaaggcggcggcgg 34048166
to top
>gb|AC158612.7| Mus musculus 10 BAC RP23-39I3 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 206234

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 72    tttcccagaaaccctagatctccc 95
             ||||||||||| ||||||||||||
Sbjct: 79412 tttcccagaaatcctagatctccc 79435
to top
>gb|AC158603.6| Mus musculus 10 BAC RP24-466C12 (Roswell Park Cancer Institute
            (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 149929

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 72   tttcccagaaaccctagatctccc 95
            ||||||||||| ||||||||||||
Sbjct: 1702 tttcccagaaatcctagatctccc 1679
to top
>emb|CR688180.2|CNS0FTY8 Tetraodon nigroviridis full-length cDNA
          Length = 1182

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 104  ccgccgctgctgcagcccca 123
            ||||||||||||||||||||
Sbjct: 1129 ccgccgctgctgcagcccca 1110
to top
>emb|BX640449.1| Bordetella bronchiseptica strain RB50, complete genome; segment 13/16
          Length = 348074

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 189    ggcggccgcggtggtgggcg 208
              ||||||||||||||||||||
Sbjct: 141142 ggcggccgcggtggtgggcg 141123
to top
>emb|BX640434.1| Bordetella parapertussis strain 12822, complete genome; segment 12/14
          Length = 344805

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   ggcggccgcggtggtgggcg 208
             ||||||||||||||||||||
Sbjct: 93823 ggcggccgcggtggtgggcg 93804
to top
>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12
          Length = 346359

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 189    ggcggccgcggtggtgggcg 208
              ||||||||||||||||||||
Sbjct: 250048 ggcggccgcggtggtgggcg 250067
to top
>emb|AJ543650.1|RSP543650 Rhodobacter sphaeroides smc gene
          Length = 3456

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 150  ccgcgcgcggctgcgcgagg 169
            ||||||||||||||||||||
Sbjct: 2178 ccgcgcgcggctgcgcgagg 2197
to top
>gb|AC113336.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0011A24, from chromosome 10, complete sequence
          Length = 176832

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     aaaccctagcccgcgccgcc 70
              ||||||||||||||||||||
Sbjct: 105198 aaaccctagcccgcgccgcc 105217
to top
>gb|AE005705.1| Caulobacter crescentus CB15 section 31 of 359 of the complete genome
          Length = 11217

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 280  ggccagcacgcagcgctcgctgct 303
            |||||||||| |||||||||||||
Sbjct: 5694 ggccagcacgaagcgctcgctgct 5717
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 59     gcccgcgccgccctttccca 78
              ||||||||||||||||||||
Sbjct: 147827 gcccgcgccgccctttccca 147808
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 51      aaaccctagcccgcgccgcc 70
               ||||||||||||||||||||
Sbjct: 4799918 aaaccctagcccgcgccgcc 4799937
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 180      ggagccgaaggcggccgcgg 199
                ||||||||||||||||||||
Sbjct: 22134830 ggagccgaaggcggccgcgg 22134849
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 164      gcgaggaggcgggagaggagccgaaggcggccgcgg 199
                |||| ||||||||||||||| | |||||||| ||||
Sbjct: 34138673 gcgacgaggcgggagaggaggcaaaggcggcggcgg 34138638
to top
>gb|AC007433.16|AC007433 Mus musculus chromosome 10, clone RP21-340M5, complete sequence
          Length = 125105

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 72     tttcccagaaaccctagatctccc 95
              ||||||||||| ||||||||||||
Sbjct: 123866 tttcccagaaatcctagatctccc 123843
to top
>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete
             sequence
          Length = 163828

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 164   gcgaggaggcgggagaggagccgaaggcggccgcgg 199
             |||| ||||||||||||||| | |||||||| ||||
Sbjct: 12013 gcgacgaggcgggagaggaggcaaaggcggcggcgg 11978
to top
>dbj|AB166747.1| Mus musculus Trpm2 mRNA for transient receptor potential cation
            channel, subfamily M, member 2, complete cds
          Length = 6069

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 72   tttcccagaaaccctagatctccc 95
            ||||||||||| ||||||||||||
Sbjct: 5977 tttcccagaaatcctagatctccc 5954
to top
>gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence,
            complete sequence
          Length = 172337

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 164  gcgaggaggcgggagaggagccgaaggcggccgcgg 199
            |||| ||||||||||||||| | |||||||| ||||
Sbjct: 9490 gcgacgaggcgggagaggaggcaaaggcggcggcgg 9525
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 189    ggcggccgcggtggtgggcg 208
              ||||||||||||||||||||
Sbjct: 216228 ggcggccgcggtggtgggcg 216247
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 153     cgcgcggctgcgcgaggagg 172
               ||||||||||||||||||||
Sbjct: 5372546 cgcgcggctgcgcgaggagg 5372527
to top
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 193    gccgcggtggtgggcgtctacaag 216
              |||||||||||||||||| |||||
Sbjct: 727256 gccgcggtggtgggcgtcgacaag 727233
to top
>dbj|AP004810.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1068H08
          Length = 152794

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   aggcggccgcggtggtgggc 207
             ||||||||||||||||||||
Sbjct: 41150 aggcggccgcggtggtgggc 41131
to top
>dbj|AP005125.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0058I18
          Length = 151453

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 180   ggagccgaaggcggccgcgg 199
             ||||||||||||||||||||
Sbjct: 88486 ggagccgaaggcggccgcgg 88505
to top
>dbj|AK109557.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-D08, full
           insert sequence
          Length = 1630

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 180 ggagccgaaggcggccgcgg 199
           ||||||||||||||||||||
Sbjct: 657 ggagccgaaggcggccgcgg 638
to top
>dbj|AK101720.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061A09, full
           insert sequence
          Length = 2576

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 59  gcccgcgccgccctttccca 78
           ||||||||||||||||||||
Sbjct: 278 gcccgcgccgccctttccca 297
to top
>emb|AJ322736.1|HSA322736 Homo sapiens genomic sequence surrounding NotI site, clone NR1-OO2C
          Length = 735

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 178 gaggagccgaaggcggccgcggtg 201
           |||||||||||||||| |||||||
Sbjct: 176 gaggagccgaaggcgggcgcggtg 153
to top
>dbj|AK058589.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-G05, full
           insert sequence
          Length = 1690

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 188 aggcggccgcggtggtgggc 207
           ||||||||||||||||||||
Sbjct: 350 aggcggccgcggtggtgggc 331
to top
>dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complete sequence
          Length = 210614

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 153    cgcgcggctgcgcgaggagg 172
              ||||||||||||||||||||
Sbjct: 119278 cgcgcggctgcgcgaggagg 119259
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 51      aaaccctagcccgcgccgcc 70
               ||||||||||||||||||||
Sbjct: 4800739 aaaccctagcccgcgccgcc 4800758
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 59     gcccgcgccgccctttccca 78
              ||||||||||||||||||||
Sbjct: 147827 gcccgcgccgccctttccca 147808
to top
>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from
              chromosome 11 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 160673

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     gcccgcgccgccctttccca 78
              ||||||||||||||||||||
Sbjct: 157166 gcccgcgccgccctttccca 157185
to top
>gb|AF019407.1|AF019407 Caulobacter crescentus GTP-binding protein (cgtA) gene, complete
           cds
          Length = 1200

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 280 ggccagcacgcagcgctcgctgct 303
           |||||||||| |||||||||||||
Sbjct: 702 ggccagcacgaagcgctcgctgct 679
to top
>emb|AL773585.7| Mouse DNA sequence from clone RP23-16D18 on chromosome 2, complete
              sequence
          Length = 207100

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 68     gccctttcccagaaacccta 87
              ||||||||||||||||||||
Sbjct: 157442 gccctttcccagaaacccta 157461
to top
>dbj|D55717.1| Porcine rotavirus mRNA for RGD-containing collagen associated
            protein, complete cds
          Length = 2819

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 231  gctcaccttcaactgcaagcccatcatc 258
            ||||||| ||||| ||||||||||||||
Sbjct: 1199 gctcaccatcaacggcaagcccatcatc 1226


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,222,421
Number of Sequences: 3902068
Number of extensions: 3222421
Number of successful extensions: 68737
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67061
Number of HSP's gapped (non-prelim): 1676
length of query: 345
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 323
effective length of database: 17,147,199,772
effective search space: 5538545526356
effective search space used: 5538545526356
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top