ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl10b11 |
|---|---|
| Clone Library Name | barley_pub |
>IE18_PRVKA (P33479) Immediate-early protein IE180| Length = 1446 Score = 30.8 bits (68), Expect = 0.94 Identities = 18/55 (32%), Positives = 24/55 (43%) Frame = -2 Query: 275 SDESAGRASNPRTDQGSRRTVVTAGTSPPPGEEARATATWPSPAG*SAENGIAPA 111 S S+ +S D+G R A PPP A A A PS + S+ +PA Sbjct: 389 SSSSSSSSSEGEEDEGVRPGAPLARAGPPPSPPAPAAAPRPSASSASSSAAASPA 443
>IE18_PRVIF (P11675) Immediate-early protein IE180| Length = 1461 Score = 30.4 bits (67), Expect = 1.2 Identities = 19/55 (34%), Positives = 24/55 (43%) Frame = -2 Query: 275 SDESAGRASNPRTDQGSRRTVVTAGTSPPPGEEARATATWPSPAG*SAENGIAPA 111 S S+ +S D+G R A PPP A A A PS + SA + A A Sbjct: 397 SSSSSSSSSEGEEDEGVRPGAPLARAGPPPSPPAPAAAPRPSASSASATSSSAAA 451
>OPHN1_PONPY (Q7YQL5) Oligophrenin 1| Length = 802 Score = 28.9 bits (63), Expect = 3.6 Identities = 13/27 (48%), Positives = 13/27 (48%) Frame = -3 Query: 250 PIQGPIKVPGVQSSLPAPRPLRAKKHG 170 P GP K P PAPRPL K G Sbjct: 694 PGSGPTKTPSFHIKRPAPRPLAHHKEG 720
>OPHN1_PANTR (Q7YQL6) Oligophrenin 1| Length = 802 Score = 28.9 bits (63), Expect = 3.6 Identities = 13/27 (48%), Positives = 13/27 (48%) Frame = -3 Query: 250 PIQGPIKVPGVQSSLPAPRPLRAKKHG 170 P GP K P PAPRPL K G Sbjct: 694 PGSGPTKTPSFHIKRPAPRPLAHHKEG 720
>OPHN1_HUMAN (O60890) Oligophrenin 1| Length = 802 Score = 28.9 bits (63), Expect = 3.6 Identities = 13/27 (48%), Positives = 13/27 (48%) Frame = -3 Query: 250 PIQGPIKVPGVQSSLPAPRPLRAKKHG 170 P GP K P PAPRPL K G Sbjct: 694 PGSGPTKTPSFHIKRPAPRPLAHHKEG 720
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 28.9 bits (63), Expect = 3.6 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -2 Query: 212 VTAGTSPPPGEEARATATWPSPAG*SAEN 126 V++G PPPG A +P P G SA++ Sbjct: 304 VSSGVPPPPGTPGAAPLAFPPPPGQSAQD 332
>MAP4_BOVIN (P36225) Microtubule-associated protein 4 (MAP 4)| (Microtubule-associated protein-U) (MAP-U) Length = 1072 Score = 28.5 bits (62), Expect = 4.6 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%) Frame = -2 Query: 239 TDQGSRRTVVTAGTSPPPG--EEARATATWPSPAG 141 T +++ GT+PP G AR TAT P P+G Sbjct: 812 TTSSVKKSTTVPGTAPPAGAPSRARPTATPPRPSG 846
>BCSC_XANAC (P58938) Cellulose synthase operon protein C precursor| Length = 1508 Score = 28.5 bits (62), Expect = 4.6 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = -3 Query: 238 PIKVPGVQSSLPAPRPLRAKKHG 170 P++ V S+LPAP LRA HG Sbjct: 921 PVRASTVPSTLPAPSRLRASTHG 943
>ADRM1_RAT (Q9JMB5) Adhesion-regulating molecule 1 precursor (110 kDa cell| membrane glycoprotein) (Gp110) Length = 407 Score = 28.1 bits (61), Expect = 6.1 Identities = 20/55 (36%), Positives = 28/55 (50%) Frame = -2 Query: 275 SDESAGRASNPRTDQGSRRTVVTAGTSPPPGEEARATATWPSPAG*SAENGIAPA 111 S S+ R+ + S T +A +P P A A+AT PSPA S+ NG + A Sbjct: 204 SSSSSSRSQSAAVTPSS--TTSSARATPAPSAPAAASATSPSPAP-SSGNGTSTA 255
>MUC13_RAT (P97881) Mucin-13 precursor| Length = 547 Score = 28.1 bits (61), Expect = 6.1 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Frame = -2 Query: 260 GRASNPRTD--QGSRRTVVTAGTSPPPGEEARATATWPSPAG*SAE 129 G AS+P T Q + + T GT+ PPG + T T P G S++ Sbjct: 141 GGASSPTTTVTQPTGSSSQTPGTTQPPGGASTPTTTVTQPTGSSSQ 186
>ZDHC8_HUMAN (Q9ULC8) Probable palmitoyltransferase ZDHHC8 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 8) (DHHC-8) (Zinc finger protein 378) Length = 765 Score = 28.1 bits (61), Expect = 6.1 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = -2 Query: 275 SDESAGRASNPRTDQGSRRTVVTAGTSPPPGEEARATATWPSPAG 141 +D+++ A PR GS R+ G PPG T PS AG Sbjct: 648 ADQASSNAPGPRPSSGSHRSPARQGLPSPPG-----TPHSPSYAG 687
>NMD3A_HUMAN (Q8TCU5) Glutamate [NMDA] receptor subunit 3A precursor| (N-methyl-D-aspartate receptor subtype NR3A) (NMDAR-L) Length = 1115 Score = 28.1 bits (61), Expect = 6.1 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 15/58 (25%) Frame = -2 Query: 272 DESAGRASNPRTDQGSRRTVVTA-----------GTSPP----PGEEARATATWPSPA 144 D+S A + G+RR+ + G PP PGE ARA A WP A Sbjct: 70 DDSRAGAQRDEPEPGTRRSPAPSPGARWLGSTLHGRGPPGSRKPGEGARAEALWPRDA 127
>RLA2A_MAIZE (P46252) 60S acidic ribosomal protein P2A (P2)| Length = 111 Score = 27.7 bits (60), Expect = 7.9 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = +1 Query: 142 PAGDGQVAVARASSPGGGEVPAVTTVRRE 228 P G G VAVA A+ GG PA + E Sbjct: 65 PCGGGGVAVAAAAPAAGGAAPAAEAKKEE 93
>ZDHC8_PANTR (Q2THX0) Probable palmitoyltransferase ZDHHC8 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 8) (DHHC-8) Length = 765 Score = 27.7 bits (60), Expect = 7.9 Identities = 11/31 (35%), Positives = 16/31 (51%) Frame = -2 Query: 275 SDESAGRASNPRTDQGSRRTVVTAGTSPPPG 183 +D+++ A PR GS R+ G PPG Sbjct: 648 ADQASSNAPGPRPSSGSHRSPARQGLPSPPG 678
>RREB1_HUMAN (Q92766) RAS-responsive element-binding protein 1 (RREB-1)| (Raf-responsive zinc finger protein LZ321) Length = 755 Score = 27.7 bits (60), Expect = 7.9 Identities = 18/53 (33%), Positives = 23/53 (43%) Frame = -2 Query: 269 ESAGRASNPRTDQGSRRTVVTAGTSPPPGEEARATATWPSPAG*SAENGIAPA 111 E A ASN SR+ + + T E + TA WPS G N +PA Sbjct: 671 ELAPNASNHMAVTRSRKEGLASATKDCSHREEKVTAGWPSEPGQGDLNPESPA 723
>MTSM_SERMA (P14230) Modification methylase SmaI (EC 2.1.1.113) (N-4| cytosine-specific methyltransferase SmaI) (M.SmaI) Length = 292 Score = 27.7 bits (60), Expect = 7.9 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -2 Query: 254 ASNPRTDQGSRRTVVTAGTSPPPG 183 AS+P+ D+ +RRTV T P PG Sbjct: 202 ASDPKMDKKNRRTVWNINTEPYPG 225 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,885,093 Number of Sequences: 219361 Number of extensions: 453682 Number of successful extensions: 2104 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1986 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2100 length of database: 80,573,946 effective HSP length: 68 effective length of database: 65,657,398 effective search space used: 1575777552 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
