ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl10b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000001.1| Bacillus cereus E33L, complete genome 42 0.92
2emb|AL158147.17| Human DNA sequence from clone RP11-125K10 on ch... 40 3.6

>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 21     ccgctgccgccaccacaactaccgccata 49
              |||| ||| ||||||||||||||||||||
Sbjct: 972959 ccgcagcctccaccacaactaccgccata 972987



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>emb|AL158147.17| Human DNA sequence from clone RP11-125K10 on chromosome 9p24.1-24.3
             Contains the 3' end of the gene for RNA cyclase homolog
             (RNAC), a miR-101-precursor-9 micro RNA, a novel gene, a
             heterogeneous nuclear ribonucleoprotein A1 (HNRPA1)
             pseudogene, the 5' UTR of the JAK2 gene for Janus kinase 2
             (a protein tyrosine kinase) and a CpG island, complete
             sequence
          Length = 172186

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    ccacaactaccgccataagc 52
             ||||||||||||||||||||
Sbjct: 60477 ccacaactaccgccataagc 60496


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,191,612
Number of Sequences: 3902068
Number of extensions: 1191612
Number of successful extensions: 25667
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25663
Number of HSP's gapped (non-prelim): 4
length of query: 279
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 257
effective length of database: 17,147,199,772
effective search space: 4406830341404
effective search space used: 4406830341404
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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