Clone Name | bastl10b08 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_482249.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2685 Score = 42.1 bits (21), Expect = 0.23 Identities = 30/33 (90%) Strand = Plus / Plus Query: 14 atggcggagtcgccggagcagttcaggggccag 46 ||||||| ||||||||||||||| |||||||| Sbjct: 1 atggcggcctcgccggagcagttccggggccag 33
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 0.23 Identities = 30/33 (90%) Strand = Plus / Plus Query: 14 atggcggagtcgccggagcagttcaggggccag 46 ||||||| ||||||||||||||| |||||||| Sbjct: 19014674 atggcggcctcgccggagcagttccggggccag 19014706
>dbj|AP003947.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1198_B10 Length = 119768 Score = 42.1 bits (21), Expect = 0.23 Identities = 30/33 (90%) Strand = Plus / Plus Query: 14 atggcggagtcgccggagcagttcaggggccag 46 ||||||| ||||||||||||||| |||||||| Sbjct: 99594 atggcggcctcgccggagcagttccggggccag 99626
>dbj|AK120068.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N11, full insert sequence Length = 2975 Score = 42.1 bits (21), Expect = 0.23 Identities = 30/33 (90%) Strand = Plus / Plus Query: 14 atggcggagtcgccggagcagttcaggggccag 46 ||||||| ||||||||||||||| |||||||| Sbjct: 100 atggcggcctcgccggagcagttccggggccag 132
>dbj|AP003904.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1051_A08 Length = 137583 Score = 42.1 bits (21), Expect = 0.23 Identities = 30/33 (90%) Strand = Plus / Plus Query: 14 atggcggagtcgccggagcagttcaggggccag 46 ||||||| ||||||||||||||| |||||||| Sbjct: 39461 atggcggcctcgccggagcagttccggggccag 39493
>ref|XM_464667.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3020 Score = 40.1 bits (20), Expect = 0.91 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 cggagcagttcaggggccag 46 |||||||||||||||||||| Sbjct: 128 cggagcagttcaggggccag 147
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 0.91 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 cggagcagttcaggggccag 46 |||||||||||||||||||| Sbjct: 12319113 cggagcagttcaggggccag 12319094
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 0.91 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 cggagcagttcaggggccag 46 |||||||||||||||||||| Sbjct: 6598449 cggagcagttcaggggccag 6598468
>dbj|AP003511.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0578B12 Length = 151192 Score = 40.1 bits (20), Expect = 0.91 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 cggagcagttcaggggccag 46 |||||||||||||||||||| Sbjct: 35573 cggagcagttcaggggccag 35554
>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0027A02 Length = 140402 Score = 40.1 bits (20), Expect = 0.91 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 cggagcagttcaggggccag 46 |||||||||||||||||||| Sbjct: 32824 cggagcagttcaggggccag 32843
>dbj|AK066996.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089H24, full insert sequence Length = 3020 Score = 40.1 bits (20), Expect = 0.91 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 cggagcagttcaggggccag 46 |||||||||||||||||||| Sbjct: 128 cggagcagttcaggggccag 147
>gb|AC112504.6| Homo sapiens 3 BAC RP11-271K21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 215077 Score = 38.2 bits (19), Expect = 3.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 ggagcagttcaggggccag 46 ||||||||||||||||||| Sbjct: 19409 ggagcagttcaggggccag 19427
>emb|AL451070.18| Human DNA sequence from clone RP11-266K22 on chromosome 1 Contains the 5' end of the gene for U5 snRNP-specific 40 kDa protein (hPrp8-binding) (HPRP8BP), the gene for putative S1 RNA binding domain protein (PS1D), a novel gene and the FABP3 gene for fatty acid binding protein 3 muscle and heart (mammary-derived growth inhibitor), complete sequence Length = 133104 Score = 38.2 bits (19), Expect = 3.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 32 cagttcaggggccagtccc 50 ||||||||||||||||||| Sbjct: 123694 cagttcaggggccagtccc 123676 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 289,030 Number of Sequences: 3902068 Number of extensions: 289030 Number of successful extensions: 19382 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19340 Number of HSP's gapped (non-prelim): 42 length of query: 85 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 64 effective length of database: 17,151,101,840 effective search space: 1097670517760 effective search space used: 1097670517760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)