ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl10b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_482249.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.23
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.23
3dbj|AP003947.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.23
4dbj|AK120068.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.23
5dbj|AP003904.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.23
6ref|XM_464667.1| Oryza sativa (japonica cultivar-group), mRNA 40 0.91
7dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 0.91
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 0.91
9dbj|AP003511.3| Oryza sativa (japonica cultivar-group) genomic D... 40 0.91
10dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic D... 40 0.91
11dbj|AK066996.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 0.91
12gb|AC112504.6| Homo sapiens 3 BAC RP11-271K21 (Roswell Park Canc... 38 3.6
13emb|AL451070.18| Human DNA sequence from clone RP11-266K22 on ch... 38 3.6

>ref|XM_482249.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2685

 Score = 42.1 bits (21), Expect = 0.23
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                           
Query: 14 atggcggagtcgccggagcagttcaggggccag 46
          |||||||  ||||||||||||||| ||||||||
Sbjct: 1  atggcggcctcgccggagcagttccggggccag 33



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 0.23
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 14       atggcggagtcgccggagcagttcaggggccag 46
                |||||||  ||||||||||||||| ||||||||
Sbjct: 19014674 atggcggcctcgccggagcagttccggggccag 19014706



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>dbj|AP003947.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1198_B10
          Length = 119768

 Score = 42.1 bits (21), Expect = 0.23
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 14    atggcggagtcgccggagcagttcaggggccag 46
             |||||||  ||||||||||||||| ||||||||
Sbjct: 99594 atggcggcctcgccggagcagttccggggccag 99626



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>dbj|AK120068.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N11, full
           insert sequence
          Length = 2975

 Score = 42.1 bits (21), Expect = 0.23
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 14  atggcggagtcgccggagcagttcaggggccag 46
           |||||||  ||||||||||||||| ||||||||
Sbjct: 100 atggcggcctcgccggagcagttccggggccag 132



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>dbj|AP003904.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1051_A08
          Length = 137583

 Score = 42.1 bits (21), Expect = 0.23
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 14    atggcggagtcgccggagcagttcaggggccag 46
             |||||||  ||||||||||||||| ||||||||
Sbjct: 39461 atggcggcctcgccggagcagttccggggccag 39493



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>ref|XM_464667.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3020

 Score = 40.1 bits (20), Expect = 0.91
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 27  cggagcagttcaggggccag 46
           ||||||||||||||||||||
Sbjct: 128 cggagcagttcaggggccag 147



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 0.91
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 27       cggagcagttcaggggccag 46
                ||||||||||||||||||||
Sbjct: 12319113 cggagcagttcaggggccag 12319094



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 0.91
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 27      cggagcagttcaggggccag 46
               ||||||||||||||||||||
Sbjct: 6598449 cggagcagttcaggggccag 6598468



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>dbj|AP003511.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0578B12
          Length = 151192

 Score = 40.1 bits (20), Expect = 0.91
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    cggagcagttcaggggccag 46
             ||||||||||||||||||||
Sbjct: 35573 cggagcagttcaggggccag 35554



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>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0027A02
          Length = 140402

 Score = 40.1 bits (20), Expect = 0.91
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    cggagcagttcaggggccag 46
             ||||||||||||||||||||
Sbjct: 32824 cggagcagttcaggggccag 32843



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>dbj|AK066996.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089H24, full
           insert sequence
          Length = 3020

 Score = 40.1 bits (20), Expect = 0.91
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 27  cggagcagttcaggggccag 46
           ||||||||||||||||||||
Sbjct: 128 cggagcagttcaggggccag 147



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>gb|AC112504.6| Homo sapiens 3 BAC RP11-271K21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 215077

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 28    ggagcagttcaggggccag 46
             |||||||||||||||||||
Sbjct: 19409 ggagcagttcaggggccag 19427



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>emb|AL451070.18| Human DNA sequence from clone RP11-266K22 on chromosome 1 Contains the 5'
              end of the gene for U5 snRNP-specific 40 kDa protein
              (hPrp8-binding) (HPRP8BP), the gene for putative S1 RNA
              binding domain protein (PS1D), a novel gene and the FABP3
              gene for fatty acid binding protein 3 muscle and heart
              (mammary-derived growth inhibitor), complete sequence
          Length = 133104

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 32     cagttcaggggccagtccc 50
              |||||||||||||||||||
Sbjct: 123694 cagttcaggggccagtccc 123676


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 289,030
Number of Sequences: 3902068
Number of extensions: 289030
Number of successful extensions: 19382
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19340
Number of HSP's gapped (non-prelim): 42
length of query: 85
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 64
effective length of database: 17,151,101,840
effective search space: 1097670517760
effective search space used: 1097670517760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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