ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl10b06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.037 Identities = 25/26 (96%) Strand = Plus / Minus Query: 26 cgctgcctgctcctccgccgccacct 51 |||||||| ||||||||||||||||| Sbjct: 22598269 cgctgcctcctcctccgccgccacct 22598244
>dbj|AP005644.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0056I22 Length = 147728 Score = 44.1 bits (22), Expect = 0.037 Identities = 25/26 (96%) Strand = Plus / Minus Query: 26 cgctgcctgctcctccgccgccacct 51 |||||||| ||||||||||||||||| Sbjct: 46080 cgctgcctcctcctccgccgccacct 46055
>ref|XM_469773.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2274 Score = 42.1 bits (21), Expect = 0.15 Identities = 21/21 (100%) Strand = Plus / Minus Query: 30 gcctgctcctccgccgccacc 50 ||||||||||||||||||||| Sbjct: 41 gcctgctcctccgccgccacc 21
>gb|AF377947.3| Oryza sativa (japonica cultivar-group) chromosome 3, BAC clone OSJNBa0032E21, complete sequence Length = 137580 Score = 42.1 bits (21), Expect = 0.15 Identities = 21/21 (100%) Strand = Plus / Minus Query: 30 gcctgctcctccgccgccacc 50 ||||||||||||||||||||| Sbjct: 132619 gcctgctcctccgccgccacc 132599
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 0.15 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 gcctgctcctccgccgccacc 50 ||||||||||||||||||||| Sbjct: 30671059 gcctgctcctccgccgccacc 30671079 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 33000731 ctcctccgccgccacctc 33000714 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 30 gcctgctcctccgccgcc 47 |||||||||||||||||| Sbjct: 4927181 gcctgctcctccgccgcc 4927198
>gb|AC092556.8| Oryza sativa chromosome 3 BAC OSJNBa0047E24 genomic sequence, complete sequence Length = 157970 Score = 42.1 bits (21), Expect = 0.15 Identities = 21/21 (100%) Strand = Plus / Minus Query: 30 gcctgctcctccgccgccacc 50 ||||||||||||||||||||| Sbjct: 91333 gcctgctcctccgccgccacc 91313
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 0.15 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 gcctgctcctccgccgccacc 50 ||||||||||||||||||||| Sbjct: 30762481 gcctgctcctccgccgccacc 30762501 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 33091241 ctcctccgccgccacctc 33091224 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 30 gcctgctcctccgccgcc 47 |||||||||||||||||| Sbjct: 4926396 gcctgctcctccgccgcc 4926413
>dbj|AK102404.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092K11, full insert sequence Length = 2700 Score = 42.1 bits (21), Expect = 0.15 Identities = 21/21 (100%) Strand = Plus / Minus Query: 30 gcctgctcctccgccgccacc 50 ||||||||||||||||||||| Sbjct: 192 gcctgctcctccgccgccacc 172
>dbj|AP006677.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT46E19, TM0371b, complete sequence Length = 67552 Score = 42.1 bits (21), Expect = 0.15 Identities = 21/21 (100%) Strand = Plus / Plus Query: 35 ctcctccgccgccacctcacg 55 ||||||||||||||||||||| Sbjct: 1621 ctcctccgccgccacctcacg 1641
>gb|AC150516.2| Bos taurus BAC CH240-117L9 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 237116 Score = 40.1 bits (20), Expect = 0.58 Identities = 23/24 (95%) Strand = Plus / Minus Query: 29 tgcctgctcctccgccgccacctc 52 ||||||||||||||| |||||||| Sbjct: 74716 tgcctgctcctccgcagccacctc 74693
>gb|AC008259.4|AC008259 Drosophila melanogaster, chromosome 2R, region 43D-43D, BAC clone BACR04H12, complete sequence Length = 175285 Score = 40.1 bits (20), Expect = 0.58 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 gcgcgctgcctgctcctccg 42 |||||||||||||||||||| Sbjct: 39005 gcgcgctgcctgctcctccg 38986
>gb|AC008258.4|AC008258 Drosophila melanogaster, chromosome 2R, region 43C-43C, BAC clone BACR04G20, complete sequence Length = 184079 Score = 40.1 bits (20), Expect = 0.58 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 gcgcgctgcctgctcctccg 42 |||||||||||||||||||| Sbjct: 139512 gcgcgctgcctgctcctccg 139493
>gb|AE003840.3| Drosophila melanogaster chromosome 2R, section 10 of 73 of the complete sequence Length = 272100 Score = 40.1 bits (20), Expect = 0.58 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 gcgcgctgcctgctcctccg 42 |||||||||||||||||||| Sbjct: 29409 gcgcgctgcctgctcctccg 29390
>gb|AC005641.1|AC005641 Drosophila melanogaster, chromosome 2R, region 43D1-43D7, P1 clone DS03454, complete sequence Length = 50089 Score = 40.1 bits (20), Expect = 0.58 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 gcgcgctgcctgctcctccg 42 |||||||||||||||||||| Sbjct: 26605 gcgcgctgcctgctcctccg 26586
>gb|AC093104.2| Drosophila melanogaster clone BACR38O04, complete sequence Length = 167107 Score = 38.2 bits (19), Expect = 2.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 27 gctgcctgctcctccgccg 45 ||||||||||||||||||| Sbjct: 94446 gctgcctgctcctccgccg 94428
>gb|AY657915.1| Synthetic construct Peudomonas aeruginosa clone FLH046001.01F PA2374 gene, partial cds Length = 537 Score = 38.2 bits (19), Expect = 2.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 12 gcaagcccatggcgcgctg 30 ||||||||||||||||||| Sbjct: 485 gcaagcccatggcgcgctg 503
>ref|XM_589706.2| PREDICTED: Bos taurus similar to Homeodomain-interacting protein kinase 1 (LOC512233), mRNA Length = 4169 Score = 38.2 bits (19), Expect = 2.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 ctcctccgccgccacctcacggc 57 ||||||||||||| ||||||||| Sbjct: 58 ctcctccgccgcctcctcacggc 80
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 38.2 bits (19), Expect = 2.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 27 gctgcctgctcctccgccg 45 ||||||||||||||||||| Sbjct: 2625204 gctgcctgctcctccgccg 2625222
>emb|AL137856.24| Human DNA sequence from clone RP5-1073O3 on chromosome 1p13.1-13.3 Contains the 5' end of the gene for a novel protein (FLJ11220 and FLJ12104), the PTPN22 gene for protein tyrosine phosphatase non-receptor type 22 (lymphoid), the gene for a novel protein, the AP4B1 gene for adaptor-related protein complex 4 beta 1 subunit, the DCLRE1B gene for DNA cross-link repair 1B (PSO2 homolog, S. cerevisiae), three novel genes, the 5' end of the HIPK1 gene for homeodomain interacting protein kinase 1 and three CpG islands, complete sequence Length = 143618 Score = 38.2 bits (19), Expect = 2.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 ctcctccgccgccacctcacggc 57 ||||||||||||| ||||||||| Sbjct: 136967 ctcctccgccgcctcctcacggc 136989
>ref|NM_206056.2| Drosophila melanogaster lingerer CG8715-RC, transcript variant C (lig), mRNA Length = 5442 Score = 38.2 bits (19), Expect = 2.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 27 gctgcctgctcctccgccg 45 ||||||||||||||||||| Sbjct: 1740 gctgcctgctcctccgccg 1722
>ref|NM_165586.2| Drosophila melanogaster lingerer CG8715-RB, transcript variant B (lig), mRNA Length = 5082 Score = 38.2 bits (19), Expect = 2.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 27 gctgcctgctcctccgccg 45 ||||||||||||||||||| Sbjct: 1413 gctgcctgctcctccgccg 1395
>ref|NM_136504.3| Drosophila melanogaster lingerer CG8715-RA, transcript variant A (lig), mRNA Length = 5087 Score = 38.2 bits (19), Expect = 2.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 27 gctgcctgctcctccgccg 45 ||||||||||||||||||| Sbjct: 1385 gctgcctgctcctccgccg 1367
>ref|NM_001014503.1| Drosophila melanogaster lingerer CG8715-RD, transcript variant D (lig), mRNA Length = 4568 Score = 38.2 bits (19), Expect = 2.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 27 gctgcctgctcctccgccg 45 ||||||||||||||||||| Sbjct: 1396 gctgcctgctcctccgccg 1378
>gb|AY069682.1| Drosophila melanogaster LD45430 full length cDNA Length = 5091 Score = 38.2 bits (19), Expect = 2.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 27 gctgcctgctcctccgccg 45 ||||||||||||||||||| Sbjct: 1413 gctgcctgctcctccgccg 1395
>gb|AE004663.1| Pseudomonas aeruginosa PAO1, section 224 of 529 of the complete genome Length = 10392 Score = 38.2 bits (19), Expect = 2.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 12 gcaagcccatggcgcgctg 30 ||||||||||||||||||| Sbjct: 9754 gcaagcccatggcgcgctg 9772
>gb|AF276964.1| Drosophila melanogaster lingerer protein type2 (lig) mRNA, complete cds Length = 4555 Score = 38.2 bits (19), Expect = 2.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 27 gctgcctgctcctccgccg 45 ||||||||||||||||||| Sbjct: 1396 gctgcctgctcctccgccg 1378
>gb|AF276963.1| Drosophila melanogaster lingerer protein type1 (lig) mRNA, complete cds Length = 4936 Score = 38.2 bits (19), Expect = 2.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 27 gctgcctgctcctccgccg 45 ||||||||||||||||||| Sbjct: 1377 gctgcctgctcctccgccg 1359
>gb|AE003838.3| Drosophila melanogaster chromosome 2R, section 12 of 73 of the complete sequence Length = 226833 Score = 38.2 bits (19), Expect = 2.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 27 gctgcctgctcctccgccg 45 ||||||||||||||||||| Sbjct: 29021 gctgcctgctcctccgccg 29003
>gb|AC005473.1|AC005473 Drosophila melanogaster, chromosome 2R, region 44A3-44A4, P1 clone DS02142, complete sequence Length = 76743 Score = 38.2 bits (19), Expect = 2.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 27 gctgcctgctcctccgccg 45 ||||||||||||||||||| Sbjct: 39903 gctgcctgctcctccgccg 39921
>dbj|AB089957.1| Homo sapiens HIPK1 mRNA for homeodomain-interacting protein kinase-1, complete cds Length = 4224 Score = 38.2 bits (19), Expect = 2.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 ctcctccgccgccacctcacggc 57 ||||||||||||| ||||||||| Sbjct: 64 ctcctccgccgcctcctcacggc 86
>ref|NM_112265.3| Arabidopsis thaliana protein binding AT3G14090 mRNA, complete cds Length = 2216 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 296 ctcctccgccgccacctc 313
>ref|XM_511981.1| PREDICTED: Pan troglodytes LOC455239 (LOC455239), mRNA Length = 1584 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 23 gcgcgctgcctgctcctc 40 |||||||||||||||||| Sbjct: 456 gcgcgctgcctgctcctc 439
>ref|XM_482178.1| Oryza sativa (japonica cultivar-group), mRNA Length = 555 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 31 ctcctccgccgccacctc 48
>ref|XM_470584.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1983 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 30 gcctgctcctccgccgcc 47 |||||||||||||||||| Sbjct: 183 gcctgctcctccgccgcc 166
>ref|NM_185048.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1371 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 145 ctcctccgccgccacctc 128
>ref|NM_194842.1| Oryza sativa (japonica cultivar-group) putative salt-inducible protein (OSJNBa0030B02.16), mRNA Length = 2565 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 78 ctcctccgccgccacctc 95
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 37 cctccgccgccacctcac 54 |||||||||||||||||| Sbjct: 967851 cctccgccgccacctcac 967834
>ref|NM_187791.2| Oryza sativa (japonica cultivar-group), mRNA Length = 2044 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 282 ctcctccgccgccacctc 299
>ref|XM_476927.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1680 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 34 gctcctccgccgccacct 51 |||||||||||||||||| Sbjct: 24 gctcctccgccgccacct 41
>ref|XM_473537.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2043 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 37 cctccgccgccacctcac 54 |||||||||||||||||| Sbjct: 220 cctccgccgccacctcac 203
>gb|AC121116.7| Mus musculus chromosome 8, clone RP23-267D22, complete sequence Length = 200891 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 34 gctcctccgccgccacct 51 |||||||||||||||||| Sbjct: 167369 gctcctccgccgccacct 167386
>gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 5, complete sequence Length = 1507550 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 34 gctcctccgccgccacct 51 |||||||||||||||||| Sbjct: 1365640 gctcctccgccgccacct 1365657
>gb|BC038378.1| Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, transcript variant 3, mRNA (cDNA clone IMAGE:5359627), complete cds Length = 3626 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 823 ctcctccgccgccacctc 806
>gb|AC091263.15| Mus musculus chromosome 9, clone RP23-134F1, complete sequence Length = 204289 Score = 36.2 bits (18), Expect = 9.1 Identities = 21/22 (95%) Strand = Plus / Minus Query: 26 cgctgcctgctcctccgccgcc 47 |||||||| ||||||||||||| Sbjct: 172431 cgctgcctcctcctccgccgcc 172410
>gb|AC148089.8| Mus musculus chromosome 8, clone RP24-366L10, complete sequence Length = 178426 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 cctgctcctccgccgcca 48 |||||||||||||||||| Sbjct: 160062 cctgctcctccgccgcca 160045
>gb|AC105767.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1126_B11, complete sequence Length = 103615 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 60559 ctcctccgccgccacctc 60542
>ref|XM_614306.2| PREDICTED: Bos taurus a disintegrin and metalloproteinase domain 9 (meltrin gamma) (ADAM9), mRNA Length = 3585 Score = 36.2 bits (18), Expect = 9.1 Identities = 21/22 (95%) Strand = Plus / Plus Query: 31 cctgctcctccgccgccacctc 52 |||||||||||||| ||||||| Sbjct: 2167 cctgctcctccgcctccacctc 2188
>ref|XM_366644.1| Magnaporthe grisea 70-15 chromosome VII predicted protein (MG02720.4) partial mRNA Length = 777 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 569 ctcctccgccgccacctc 586
>ref|XM_420183.1| PREDICTED: Gallus gallus similar to Alpha-galactosidase A precursor (Melibiase) (Alpha-D-galactoside galactohydrolase) (Alpha-D-galactosidase A) (Agalsidase alfa) (LOC422188), mRNA Length = 3972 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 30 gcctgctcctccgccgcc 47 |||||||||||||||||| Sbjct: 2636 gcctgctcctccgccgcc 2619
>ref|XM_419605.1| PREDICTED: Gallus gallus similar to AF-6 protein (LOC421564), mRNA Length = 7257 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 5417 ctcctccgccgccacctc 5434
>ref|NM_152806.3| Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 (Ddx17), transcript variant 3, mRNA Length = 4068 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 1237 ctcctccgccgccacctc 1220
>ref|NM_001033456.1| Mus musculus RIKEN cDNA 2610005L07 gene (2610005L07Rik), mRNA Length = 2389 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 cctgctcctccgccgcca 48 |||||||||||||||||| Sbjct: 133 cctgctcctccgccgcca 116
>ref|NM_199080.2| Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 (Ddx17), transcript variant 1, mRNA Length = 4772 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 1941 ctcctccgccgccacctc 1924
>ref|NM_001040187.1| Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 (Ddx17), transcript variant 4, mRNA Length = 4766 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 1941 ctcctccgccgccacctc 1924
>gb|BC064022.1| Mus musculus RIKEN cDNA 2610005L07 gene, mRNA (cDNA clone IMAGE:5367925), partial cds Length = 4265 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 cctgctcctccgccgcca 48 |||||||||||||||||| Sbjct: 26 cctgctcctccgccgcca 9
>gb|BC025151.1| Mus musculus RIKEN cDNA 2610005L07 gene, mRNA (cDNA clone IMAGE:4163337), containing frame-shift errors Length = 1465 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 cctgctcctccgccgcca 48 |||||||||||||||||| Sbjct: 96 cctgctcctccgccgcca 79
>gb|BC010587.1| Mus musculus RIKEN cDNA 2610005L07 gene, mRNA (cDNA clone IMAGE:3711701), with apparent retained intron Length = 1968 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 cctgctcctccgccgcca 48 |||||||||||||||||| Sbjct: 110 cctgctcctccgccgcca 93
>gb|AC123048.4| Mus musculus BAC clone RP24-394D5 from chromosome 18, complete sequence Length = 148673 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 31 cctgctcctccgccgcca 48 |||||||||||||||||| Sbjct: 64364 cctgctcctccgccgcca 64381
>ref|NM_026337.1| Mus musculus SAFB-like, transcription modulator (Sltm), transcript variant 2, mRNA Length = 3569 Score = 36.2 bits (18), Expect = 9.1 Identities = 21/22 (95%) Strand = Plus / Plus Query: 26 cgctgcctgctcctccgccgcc 47 |||||||| ||||||||||||| Sbjct: 69 cgctgcctcctcctccgccgcc 90
>ref|XR_004244.1| PREDICTED: Mus musculus similar to p47 protein isoform a (LOC673496), mRNA Length = 1057 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 cctgctcctccgccgcca 48 |||||||||||||||||| Sbjct: 48 cctgctcctccgccgcca 31
>ref|XR_004243.1| PREDICTED: Mus musculus similar to p47 protein isoform a (LOC673495), mRNA Length = 2549 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 cctgctcctccgccgcca 48 |||||||||||||||||| Sbjct: 999 cctgctcctccgccgcca 982
>ref|XM_978548.1| PREDICTED: Mus musculus hypothetical protein LOC670018 (LOC670018), mRNA Length = 645 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 276 ctcctccgccgccacctc 293
>gb|BC030342.1| Mus musculus cDNA clone IMAGE:3667878, with apparent retained intron Length = 1991 Score = 36.2 bits (18), Expect = 9.1 Identities = 21/22 (95%) Strand = Plus / Minus Query: 26 cgctgcctgctcctccgccgcc 47 |||||||| ||||||||||||| Sbjct: 408 cgctgcctcctcctccgccgcc 387
>ref|XM_989180.1| PREDICTED: Mus musculus hypothetical protein LOC667229 (LOC667229), mRNA Length = 645 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 276 ctcctccgccgccacctc 293
>gb|BC059982.1| Xenopus laevis hypothetical protein MGC68668, mRNA (cDNA clone MGC:68668 IMAGE:4032881), complete cds Length = 3359 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 32 ctcctccgccgccacctc 49
>ref|XR_001562.1| PREDICTED: Mus musculus similar to p47 protein isoform a (LOC547150), misc RNA Length = 1557 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 cctgctcctccgccgcca 48 |||||||||||||||||| Sbjct: 21 cctgctcctccgccgcca 4
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 36.2 bits (18), Expect = 9.1 Identities = 21/22 (95%) Strand = Plus / Minus Query: 25 gcgctgcctgctcctccgccgc 46 |||||||||||||| ||||||| Sbjct: 1723374 gcgctgcctgctccgccgccgc 1723353
>emb|CT010454.8| Mouse DNA sequence from clone RP23-348C22 on chromosome 13, complete sequence Length = 221281 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 2 atacaatggagcaagccc 19 |||||||||||||||||| Sbjct: 70648 atacaatggagcaagccc 70631
>ref|XM_813585.1| Trypanosoma cruzi strain CL Brener transitional endoplasmic reticulum ATPase (Tc00.1047053509733.170) partial mRNA Length = 2337 Score = 36.2 bits (18), Expect = 9.1 Identities = 21/22 (95%) Strand = Plus / Minus Query: 29 tgcctgctcctccgccgccacc 50 ||||||| |||||||||||||| Sbjct: 2308 tgcctgcacctccgccgccacc 2287
>ref|XM_747246.1| Aspergillus fumigatus Af293 hypothetical protein (Afu1g09720) partial mRNA Length = 771 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 26 ctcctccgccgccacctc 43
>ref|XM_571006.1| Cryptococcus neoformans var. neoformans JEC21 mRNA polyadenylation-related protein (CNE04890) partial mRNA Length = 2646 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 34 gctcctccgccgccacct 51 |||||||||||||||||| Sbjct: 2407 gctcctccgccgccacct 2424
>ref|XM_571007.1| Cryptococcus neoformans var. neoformans JEC21 mRNA polyadenylation-related protein (CNE04890) partial mRNA Length = 2751 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 34 gctcctccgccgccacct 51 |||||||||||||||||| Sbjct: 2407 gctcctccgccgccacct 2424
>gb|AC105731.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0064E16, complete sequence Length = 159092 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 30 gcctgctcctccgccgcc 47 |||||||||||||||||| Sbjct: 68366 gcctgctcctccgccgcc 68349
>emb|CR729698.2|CNS0GPZC Tetraodon nigroviridis full-length cDNA Length = 1301 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 1143 ctcctccgccgccacctc 1126
>gb|AC158995.2| Mus musculus BAC clone RP24-81K2 from chromosome 9, complete sequence Length = 169799 Score = 36.2 bits (18), Expect = 9.1 Identities = 21/22 (95%) Strand = Plus / Minus Query: 26 cgctgcctgctcctccgccgcc 47 |||||||| ||||||||||||| Sbjct: 56089 cgctgcctcctcctccgccgcc 56068
>emb|AL451042.10| Human DNA sequence from clone RP11-276H7 on chromosome 1 Contains the EPHA2 gene for EphA2, two novel genes and two CpG islands, complete sequence Length = 88098 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 28 ctgcctgctcctccgccg 45 |||||||||||||||||| Sbjct: 25457 ctgcctgctcctccgccg 25440
>emb|AL109760.3|HSJ513G18 Human DNA sequence from clone RP3-513G18 on chromosome 4, complete sequence Length = 112560 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 27 gctgcctgctcctccgcc 44 |||||||||||||||||| Sbjct: 40481 gctgcctgctcctccgcc 40464
>emb|BX842653.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 8/11 Length = 347636 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 19 catggcgcgctgcctgct 36 |||||||||||||||||| Sbjct: 19013 catggcgcgctgcctgct 19030
>emb|AL663003.2|OSJN00203 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0032E06, complete sequence Length = 125196 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 37 cctccgccgccacctcac 54 |||||||||||||||||| Sbjct: 29041 cctccgccgccacctcac 29024
>gb|AC117806.11| Mus musculus chromosome 15, clone RP24-566D14, complete sequence Length = 194925 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 63733 ctcctccgccgccacctc 63750
>emb|CR859259.1| Pongo pygmaeus mRNA; cDNA DKFZp459D081 (from clone DKFZp459D081) Length = 4131 Score = 36.2 bits (18), Expect = 9.1 Identities = 21/22 (95%) Strand = Plus / Plus Query: 26 cgctgcctgctcctccgccgcc 47 |||||||| ||||||||||||| Sbjct: 35 cgctgcctcctcctccgccgcc 56
>gb|AC040977.10| Homo sapiens chromosome 17, clone RP11-589P10, complete sequence Length = 174741 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 23 gcgcgctgcctgctcctc 40 |||||||||||||||||| Sbjct: 161379 gcgcgctgcctgctcctc 161362
>dbj|AK095903.1| Homo sapiens cDNA FLJ38584 fis, clone HCHON2008989, highly similar to Homo sapiens mRNA for WW45 protein Length = 2053 Score = 36.2 bits (18), Expect = 9.1 Identities = 21/22 (95%) Strand = Plus / Minus Query: 31 cctgctcctccgccgccacctc 52 ||||| |||||||||||||||| Sbjct: 305 cctgcacctccgccgccacctc 284
>gb|AC090436.37| Chlamydomonas reinhardtii clone cr-3h1, complete sequence Length = 102653 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 85237 ctcctccgccgccacctc 85220
>gb|AC090435.28| Chlamydomonas reinhardtii clone cr-32m22, complete sequence Length = 79677 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 44636 ctcctccgccgccacctc 44653
>dbj|AK131627.1| Mus musculus adult male cerebellum cDNA, RIKEN full-length enriched library, clone:1500016I10 product:similar to Cadherin (Fragment) [Gallus gallus], full insert sequence Length = 4011 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 cctgctcctccgccgcca 48 |||||||||||||||||| Sbjct: 138 cctgctcctccgccgcca 121
>dbj|AK134636.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length enriched library, clone:6330508J08 product:unclassifiable, full insert sequence Length = 4633 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 cctgctcctccgccgcca 48 |||||||||||||||||| Sbjct: 25 cctgctcctccgccgcca 8
>dbj|AK132389.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:4121403G09 product:hypothetical UBA-like containing protein, full insert sequence Length = 4279 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 cctgctcctccgccgcca 48 |||||||||||||||||| Sbjct: 45 cctgctcctccgccgcca 28
>dbj|AK135487.1| Mus musculus 12 days embryo female mullerian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6820431F20 product:unclassifiable, full insert sequence Length = 4660 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 cctgctcctccgccgcca 48 |||||||||||||||||| Sbjct: 24 cctgctcctccgccgcca 7
>ref|NM_201566.1| Homo sapiens solute carrier family 16 (monocarboxylic acid transporters), member 13 (SLC16A13), mRNA Length = 1281 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 23 gcgcgctgcctgctcctc 40 |||||||||||||||||| Sbjct: 153 gcgcgctgcctgctcctc 136
>dbj|AK151061.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830022F15 product:Probable RNA-dependent helicase p72 (DEAD-box protein p72) (DEAD-box protein 17) homolog [Homo sapiens], full insert sequence Length = 2869 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 1716 ctcctccgccgccacctc 1699
>gb|AC074105.3| Oryza sativa chromosome 10 clone OSJNBa0030B02, complete sequence Length = 146836 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 143244 ctcctccgccgccacctc 143261
>dbj|AK152910.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830090A05 product:Similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 17 (72kD) (Human DEAD-box protein P72 homolog), full insert sequence Length = 2961 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 176 ctcctccgccgccacctc 159
>dbj|AK152831.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830087A19 product:Probable RNA-dependent helicase p72 (DEAD-box protein p72) (DEAD-box protein 17) homolog [Homo sapiens], full insert sequence Length = 2869 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 1716 ctcctccgccgccacctc 1699
>dbj|AK152749.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830083L17 product:Probable RNA-dependent helicase p72 (DEAD-box protein p72) (DEAD-box protein 17) homolog [Homo sapiens], full insert sequence Length = 2872 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 1717 ctcctccgccgccacctc 1700
>dbj|AK166663.1| Mus musculus 5 days embryo whole body cDNA, RIKEN full-length enriched library, clone:I0C0048A18 product:hypothetical protein, full insert sequence Length = 4264 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 cctgctcctccgccgcca 48 |||||||||||||||||| Sbjct: 40 cctgctcctccgccgcca 23
>dbj|AK164389.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130094K02 product:similar to Cadherin (Fragment) [Gallus gallus], full insert sequence Length = 1969 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 cctgctcctccgccgcca 48 |||||||||||||||||| Sbjct: 130 cctgctcctccgccgcca 113
>dbj|AK161012.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:4022448N16 product:Similar to P68 RNA helicase homolog [Mus musculus], full insert sequence Length = 3246 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 3053 ctcctccgccgccacctc 3036
>dbj|AK160987.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:4022432A09 product:similar to Cadherin 11 [Mus musculus], full insert sequence Length = 2389 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 cctgctcctccgccgcca 48 |||||||||||||||||| Sbjct: 133 cctgctcctccgccgcca 116
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 8 tggagcaagcccatggcg 25 |||||||||||||||||| Sbjct: 2247294 tggagcaagcccatggcg 2247311
>ref|NM_054068.2| Mus musculus visual system homeobox 1 homolog (zebrafish) (Vsx1), mRNA Length = 3579 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 23 gcgcgctgcctgctcctc 40 |||||||||||||||||| Sbjct: 490 gcgcgctgcctgctcctc 507
>gb|AY056825.1| Mus musculus transcription factor VSX1 (Vsx1) mRNA, complete cds Length = 2588 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 23 gcgcgctgcctgctcctc 40 |||||||||||||||||| Sbjct: 355 gcgcgctgcctgctcctc 372
>dbj|AK157311.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830210J18 product:visual system homeobox 1 homolog (zebrafish), full insert sequence Length = 1604 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 23 gcgcgctgcctgctcctc 40 |||||||||||||||||| Sbjct: 713 gcgcgctgcctgctcctc 730
>dbj|AK167066.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0029G16 product:hypothetical UBA-like containing protein, full insert sequence Length = 4262 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 cctgctcctccgccgcca 48 |||||||||||||||||| Sbjct: 38 cctgctcctccgccgcca 21
>dbj|AK170069.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630014K05 product:hypothetical protein, full insert sequence Length = 4265 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 cctgctcctccgccgcca 48 |||||||||||||||||| Sbjct: 31 cctgctcctccgccgcca 14
>gb|AF391757.1|AF391757 Mus musculus homeodomain protein RINX (Rinx) gene, complete cds Length = 16315 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 23 gcgcgctgcctgctcctc 40 |||||||||||||||||| Sbjct: 5783 gcgcgctgcctgctcctc 5800
>gb|AF391758.1|AF391758 Mus musculus homeodomain protein RINX (Rinx) mRNA, complete cds Length = 2483 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 23 gcgcgctgcctgctcctc 40 |||||||||||||||||| Sbjct: 335 gcgcgctgcctgctcctc 352
>gb|AF395732.1|AF395732 Mus musculus visual system homeobox 1 (Vsx1) mRNA, complete cds Length = 1404 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 23 gcgcgctgcctgctcctc 40 |||||||||||||||||| Sbjct: 442 gcgcgctgcctgctcctc 459
>dbj|AK078251.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430540A14 product:hypothetical SAP domain containing protein, full insert sequence Length = 1067 Score = 36.2 bits (18), Expect = 9.1 Identities = 21/22 (95%) Strand = Plus / Plus Query: 26 cgctgcctgctcctccgccgcc 47 |||||||| ||||||||||||| Sbjct: 54 cgctgcctcctcctccgccgcc 75
>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I, complete sequence Length = 691920 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 30 gcctgctcctccgccgcc 47 |||||||||||||||||| Sbjct: 222124 gcctgctcctccgccgcc 222141
>dbj|AK088897.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430030L01 product:hypothetical protein, full insert sequence Length = 3500 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 cctgctcctccgccgcca 48 |||||||||||||||||| Sbjct: 137 cctgctcctccgccgcca 120
>gb|AC154835.3| Mus musculus BAC clone RP24-573N16 from chromosome 13, complete sequence Length = 166266 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 2 atacaatggagcaagccc 19 |||||||||||||||||| Sbjct: 96658 atacaatggagcaagccc 96641
>dbj|AK081322.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130005F21 product:hypothetical Cadherin domain containing protein, full insert sequence Length = 3854 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 cctgctcctccgccgcca 48 |||||||||||||||||| Sbjct: 33 cctgctcctccgccgcca 16
>dbj|AK077578.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730455C01 product:hypothetical RNA-binding domain, RBD structure containing protein, full insert sequence Length = 1665 Score = 36.2 bits (18), Expect = 9.1 Identities = 21/22 (95%) Strand = Plus / Plus Query: 26 cgctgcctgctcctccgccgcc 47 |||||||| ||||||||||||| Sbjct: 92 cgctgcctcctcctccgccgcc 113
>dbj|AK009182.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2310006C03 product:cadherin 11, full insert sequence Length = 1308 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 cctgctcctccgccgcca 48 |||||||||||||||||| Sbjct: 124 cctgctcctccgccgcca 107
>dbj|AK083828.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130017F04 product:hypothetical protein, full insert sequence Length = 4257 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 cctgctcctccgccgcca 48 |||||||||||||||||| Sbjct: 33 cctgctcctccgccgcca 16
>dbj|AK012880.1| Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2810038F24 product:similar to CADHERIN (FRAGMENT) [Gallus gallus], full insert sequence Length = 952 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 cctgctcctccgccgcca 48 |||||||||||||||||| Sbjct: 38 cctgctcctccgccgcca 21
>dbj|AK035187.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430097L19 product:RIKEN cDNA 2810038F24 gene, full insert sequence Length = 1700 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 cctgctcctccgccgcca 48 |||||||||||||||||| Sbjct: 158 cctgctcctccgccgcca 141
>dbj|AK044687.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930033D24 product:visual system homeobox 1 homolog (zebrafish), full insert sequence Length = 3401 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 23 gcgcgctgcctgctcctc 40 |||||||||||||||||| Sbjct: 372 gcgcgctgcctgctcctc 389
>ref|NG_004064.1| Mus musculus hypothetical gene supported by AK009182; NM_009866 (LOC383374) pseudogene on chromosome 18 Length = 1501 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 cctgctcctccgccgcca 48 |||||||||||||||||| Sbjct: 217 cctgctcctccgccgcca 200
>dbj|AK027954.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1110033G21 product:HUMAN DEAD-BOX PROTEIN P72 homolog [Homo sapiens], full insert sequence Length = 821 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 87 ctcctccgccgccacctc 70
>dbj|AK053735.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130305F24 product:unclassifiable, full insert sequence Length = 2112 Score = 36.2 bits (18), Expect = 9.1 Identities = 21/22 (95%) Strand = Plus / Minus Query: 26 cgctgcctgctcctccgccgcc 47 |||||||| ||||||||||||| Sbjct: 545 cgctgcctcctcctccgccgcc 524
>dbj|AK044393.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930010K22 product:TRANSCRIPTION FACTOR VSX1 (VISUAL SYSTEM HOMEOBOX 1) (HOMEODOMAIN PROTEIN RINX), full insert sequence Length = 3400 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 23 gcgcgctgcctgctcctc 40 |||||||||||||||||| Sbjct: 372 gcgcgctgcctgctcctc 389
>dbj|AK030539.1| Mus musculus adult male pituitary gland cDNA, RIKEN full-length enriched library, clone:5330429B09 product:unclassifiable, full insert sequence Length = 4334 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 cctgctcctccgccgcca 48 |||||||||||||||||| Sbjct: 117 cctgctcctccgccgcca 100
>dbj|AK017816.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730543A01 product:RIKEN cDNA 2610005L07 gene, full insert sequence Length = 1323 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 cctgctcctccgccgcca 48 |||||||||||||||||| Sbjct: 33 cctgctcctccgccgcca 16
>dbj|AK033345.1| Mus musculus 15 days embryo male testis cDNA, RIKEN full-length enriched library, clone:8030498I03 product:hypothetical protein, full insert sequence Length = 4257 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 cctgctcctccgccgcca 48 |||||||||||||||||| Sbjct: 31 cctgctcctccgccgcca 14
>dbj|AK011323.1| Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2610005L07 product:similar to CADHERIN (FRAGMENT) [Gallus gallus], full insert sequence Length = 2258 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 cctgctcctccgccgcca 48 |||||||||||||||||| Sbjct: 33 cctgctcctccgccgcca 16
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 37 cctccgccgccacctcac 54 |||||||||||||||||| Sbjct: 28538251 cctccgccgccacctcac 28538234
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 2816468 ctcctccgccgccacctc 2816485
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 22607094 ctcctccgccgccacctc 22607111
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 18391152 ctcctccgccgccacctc 18391169
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 12720426 ctcctccgccgccacctc 12720409 Score = 36.2 bits (18), Expect = 9.1 Identities = 24/26 (92%) Strand = Plus / Minus Query: 25 gcgctgcctgctcctccgccgccacc 50 |||| ||||||| ||||||||||||| Sbjct: 5031451 gcgccgcctgctgctccgccgccacc 5031426 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 34 gctcctccgccgccacct 51 |||||||||||||||||| Sbjct: 4685100 gctcctccgccgccacct 4685117
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 36.2 bits (18), Expect = 9.1 Identities = 24/26 (92%) Strand = Plus / Minus Query: 35 ctcctccgccgccacctcacggccgc 60 ||||||| |||||||||||| ||||| Sbjct: 22790992 ctcctcctccgccacctcaccgccgc 22790967
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 18179377 ctcctccgccgccacctc 18179360
>gb|BC096036.1| Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, transcript variant 1, mRNA (cDNA clone MGC:106444 IMAGE:30549388), complete cds Length = 4741 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 1941 ctcctccgccgccacctc 1924
>emb|BX823844.1|CNS0A4V7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS82ZB08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2123 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 297 ctcctccgccgccacctc 314
>gb|AC104321.7| Oryza sativa chromosome 3 BAC OSJNBa0052F07 genomic sequence, complete sequence Length = 139823 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 122577 ctcctccgccgccacctc 122594
>ref|XM_576428.1| PREDICTED: Rattus norvegicus similar to Scaffold attachment factor B (Scaffold attachment factor B1) (SAF-B) (LOC501018), mRNA Length = 489 Score = 36.2 bits (18), Expect = 9.1 Identities = 21/22 (95%) Strand = Plus / Plus Query: 26 cgctgcctgctcctccgccgcc 47 |||||||| ||||||||||||| Sbjct: 146 cgctgcctcctcctccgccgcc 167
>ref|XM_235480.3| PREDICTED: Rattus norvegicus DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 (predicted) (Ddx17_predicted), mRNA Length = 2353 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 1826 ctcctccgccgccacctc 1809
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 30 gcctgctcctccgccgcc 47 |||||||||||||||||| Sbjct: 522444 gcctgctcctccgccgcc 522427
>gb|AF267176.1|AF267176 Pyricularia grisea chromosome 7 clone BAC 6J18, genomic sequence Length = 111865 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 57006 ctcctccgccgccacctc 56989
>ref|NM_001033637.1| Mus musculus RIKEN cDNA A430108E01 gene (A430108E01Rik), mRNA Length = 4262 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 cctgctcctccgccgcca 48 |||||||||||||||||| Sbjct: 38 cctgctcctccgccgcca 21
>dbj|AP006450.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1130E07 Length = 152245 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 49014 ctcctccgccgccacctc 49031
>dbj|AP003622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0633E08 Length = 136471 Score = 36.2 bits (18), Expect = 9.1 Identities = 24/26 (92%) Strand = Plus / Minus Query: 35 ctcctccgccgccacctcacggccgc 60 ||||||| |||||||||||| ||||| Sbjct: 77943 ctcctcctccgccacctcaccgccgc 77918
>dbj|AP006162.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1331F11 Length = 132205 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 122295 ctcctccgccgccacctc 122312
>dbj|AP005124.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0049I08 Length = 144379 Score = 36.2 bits (18), Expect = 9.1 Identities = 24/26 (92%) Strand = Plus / Minus Query: 25 gcgctgcctgctcctccgccgccacc 50 |||| ||||||| ||||||||||||| Sbjct: 73140 gcgccgcctgctgctccgccgccacc 73115
>dbj|AP005179.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0084L07 Length = 127992 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 34 gctcctccgccgccacct 51 |||||||||||||||||| Sbjct: 3010 gctcctccgccgccacct 3027
>dbj|AP004305.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0492E07 Length = 143794 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 94896 ctcctccgccgccacctc 94879
>dbj|AP000600.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MAG2 Length = 73859 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 12189 ctcctccgccgccacctc 12172
>dbj|AP005502.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0473F05 Length = 140575 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 77321 ctcctccgccgccacctc 77338
>gb|AC002115.1|HSAC002115 Human DNA from overlapping chromosome 19 cosmids R31396, F25451, and R31076 containing COX6B and UPKA, genomic sequence, complete sequence Length = 103574 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 27 gctgcctgctcctccgcc 44 |||||||||||||||||| Sbjct: 58660 gctgcctgctcctccgcc 58643
>dbj|AK111395.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-D04, full insert sequence Length = 1430 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 30 gcctgctcctccgccgcc 47 |||||||||||||||||| Sbjct: 551 gcctgctcctccgccgcc 534
>dbj|AK106929.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-C01, full insert sequence Length = 2044 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 282 ctcctccgccgccacctc 299
>dbj|AK103841.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148I18, full insert sequence Length = 2762 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 348 ctcctccgccgccacctc 365
>dbj|AK103546.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132E13, full insert sequence Length = 2494 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 37 cctccgccgccacctcac 54 |||||||||||||||||| Sbjct: 342 cctccgccgccacctcac 325
>dbj|AK099211.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072E13, full insert sequence Length = 1328 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 160 ctcctccgccgccacctc 143
>ref|NM_207823.1| Eremothecium gossypii AAL072Cp (AAL072C), mRNA Length = 3663 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 30 gcctgctcctccgccgcc 47 |||||||||||||||||| Sbjct: 497 gcctgctcctccgccgcc 480
>dbj|AK067840.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128M09, full insert sequence Length = 1389 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 160 ctcctccgccgccacctc 143
>gb|BC057647.1| Mus musculus visual system homeobox 1 homolog (zebrafish), mRNA (cDNA clone MGC:67932 IMAGE:4511665), complete cds Length = 3579 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 23 gcgcgctgcctgctcctc 40 |||||||||||||||||| Sbjct: 490 gcgcgctgcctgctcctc 507
>gb|BC027758.1| Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, transcript variant 3, mRNA (cDNA clone IMAGE:5345465), complete cds Length = 3323 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 474 ctcctccgccgccacctc 457
>gb|AC154401.2| Mus musculus BAC clone RP23-166O7 from 13, complete sequence Length = 199694 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 94451 ctcctccgccgccacctc 94434
>dbj|AK063784.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-D10, full insert sequence Length = 850 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 546 ctcctccgccgccacctc 563
>dbj|AP004384.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0506C07 Length = 123451 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 34 gctcctccgccgccacct 51 |||||||||||||||||| Sbjct: 92473 gctcctccgccgccacct 92490
>tpe|BN000145.1|HSA000145 TPA: TPA_inf: Homo sapiens mRNA for monocarboxylate transporter 13 (SLC16A13 gene) Length = 1281 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 23 gcgcgctgcctgctcctc 40 |||||||||||||||||| Sbjct: 153 gcgcgctgcctgctcctc 136
>gb|BC092629.1| Rattus norvegicus DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, mRNA (cDNA clone IMAGE:7314354), complete cds Length = 1623 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 474 ctcctccgccgccacctc 457
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 15 agcccatggcgcgctgcc 32 |||||||||||||||||| Sbjct: 2081465 agcccatggcgcgctgcc 2081448
>emb|BX538323.1|HSM806589 Homo sapiens mRNA; cDNA DKFZp686L13176 (from clone DKFZp686L13176) Length = 2445 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 23 gcgcgctgcctgctcctc 40 |||||||||||||||||| Sbjct: 440 gcgcgctgcctgctcctc 423
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 35 ctcctccgccgccacctc 52 |||||||||||||||||| Sbjct: 2816419 ctcctccgccgccacctc 2816436
>emb|Z68883.1|HSL118GB Human DNA sequence from clone LA04NC01-118G10 on chromosome 4, complete sequence Length = 27858 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 27 gctgcctgctcctccgcc 44 |||||||||||||||||| Sbjct: 14732 gctgcctgctcctccgcc 14715
>gb|BC109286.1| Homo sapiens solute carrier family 16 (monocarboxylic acid transporters), member 13, mRNA (cDNA clone IMAGE:40031954), partial cds Length = 1277 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 23 gcgcgctgcctgctcctc 40 |||||||||||||||||| Sbjct: 149 gcgcgctgcctgctcctc 132
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 30 gcctgctcctccgccgcc 47 |||||||||||||||||| Sbjct: 487749 gcctgctcctccgccgcc 487732
>gb|AC152164.14| Mus musculus chromosome 8, clone RP24-118N20, complete sequence Length = 185586 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 31 cctgctcctccgccgcca 48 |||||||||||||||||| Sbjct: 167129 cctgctcctccgccgcca 167146 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Plus Query: 31 cctgctcctccgccgcca 48 |||||||||||||||||| Sbjct: 39860 cctgctcctccgccgcca 39877
>emb|AL845174.4| Mouse DNA sequence from clone RP23-156P22 on chromosome 2, complete sequence Length = 216475 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 23 gcgcgctgcctgctcctc 40 |||||||||||||||||| Sbjct: 133029 gcgcgctgcctgctcctc 133012
>emb|AL591763.14| Mouse DNA sequence from clone RP23-480D17 on chromosome 2, complete sequence Length = 153847 Score = 36.2 bits (18), Expect = 9.1 Identities = 18/18 (100%) Strand = Plus / Minus Query: 4 acaatggagcaagcccat 21 |||||||||||||||||| Sbjct: 30319 acaatggagcaagcccat 30302 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 542,484 Number of Sequences: 3902068 Number of extensions: 542484 Number of successful extensions: 48228 Number of sequences better than 10.0: 174 Number of HSP's better than 10.0 without gapping: 178 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46864 Number of HSP's gapped (non-prelim): 1364 length of query: 62 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 41 effective length of database: 17,151,101,840 effective search space: 703195175440 effective search space used: 703195175440 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)
