ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl10b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZN584_HUMAN (Q8IVC4) Zinc finger protein 584 28 5.2
2UBD_HUMAN (O15205) Ubiquitin D (Ubiquitin-like protein FAT10) (D... 28 5.2
3AGO2_DROME (Q9VUQ5) Argonaute 2 protein 28 8.8

>ZN584_HUMAN (Q8IVC4) Zinc finger protein 584|
          Length = 421

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 77  DHGGQQRPRRGDRVAPQHG*AVPPGRRCGRHQE 175
           D   + +PRR      +HG A PPG  CG+ QE
Sbjct: 123 DTHSEGKPRRHT----EHGAAFPPGSSCGQQQE 151



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>UBD_HUMAN (O15205) Ubiquitin D (Ubiquitin-like protein FAT10) (Diubiquitin)|
          Length = 165

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 175 FLVPATSPARRHCLSVLRSDPIAASRPLLPSMVGISRE 62
           FLV +   A+RH L V RS  +A  + ++ +  GI  E
Sbjct: 91  FLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPE 128



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>AGO2_DROME (Q9VUQ5) Argonaute 2 protein|
          Length = 1214

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 83  GGQQRPRRGDRVAPQHG*AVPPGRRCGRHQEGR 181
           GG Q+ R+G     Q     PPG++ G HQ+GR
Sbjct: 235 GGHQQGRQGQEGGYQQR---PPGQQQGGHQQGR 264



 Score = 27.7 bits (60), Expect = 8.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 83  GGQQRPRRGDRVAPQHG*AVPPGRRCGRHQEGR 181
           GG Q+ R+G     Q     PPG++ G HQ+GR
Sbjct: 189 GGHQQGRQGQEGGYQQR---PPGQQQGGHQQGR 218



 Score = 27.7 bits (60), Expect = 8.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 83  GGQQRPRRGDRVAPQHG*AVPPGRRCGRHQEGR 181
           GG Q+ R+G     Q     PPG++ G HQ+GR
Sbjct: 143 GGHQQGRQGQEGGYQQR---PPGQQQGGHQQGR 172



 Score = 27.7 bits (60), Expect = 8.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 62  FSRDPDHGGQQRPRRGDRVAPQHG*AVPPGRRCGRHQEGR 181
           +++    GG Q+ R+G     Q     PPG++ G HQ+GR
Sbjct: 113 WTKQGQQGGHQQGRQGQDGGYQQR---PPGQQQGGHQQGR 149


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.139    0.567 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,641,969
Number of Sequences: 219361
Number of extensions: 281422
Number of successful extensions: 616
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 80,573,946
effective HSP length: 35
effective length of database: 72,896,311
effective search space used: 1749511464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
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