ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl10b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PI5PA_HUMAN (Q15735) Phosphatidylinositol 4,5-bisphosphate 5-pho... 28 5.5
2POLG_POL2L (P06210) Genome polyprotein [Contains: Coat protein V... 28 5.5
3POLG_POL2W (P23069) Genome polyprotein [Contains: Coat protein V... 28 5.5

>PI5PA_HUMAN (Q15735) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC|
           3.1.3.56)
          Length = 1006

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 361 PPLRLPLQCHHGPSCRGDHTAGLL 290
           PP  LPL    GPS  G H+ GLL
Sbjct: 300 PPQTLPLDVGQGPSEPGTHSPGLL 323



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>POLG_POL2L (P06210) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
           protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
           VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
           P2A); Core protein P2B; Core protein P2C; Core protein
           P3A; Genome
          Length = 2206

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 11/33 (33%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = +1

Query: 229 AEFDVKAITISANSWIDA--GHAVNQLYDLLYM 321
           + FD++   +  +++ DA  GHA+NQ+Y ++Y+
Sbjct: 705 SRFDMEFTFVVTSNYTDANNGHALNQVYQIMYI 737



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>POLG_POL2W (P23069) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
           protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
           VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
           P2A); Core protein P2B; Core protein P2C; Core protein
           P3A; Genome
          Length = 2204

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 11/33 (33%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = +1

Query: 229 AEFDVKAITISANSWIDA--GHAVNQLYDLLYM 321
           + FD++   +  +++ DA  GHA+NQ+Y ++Y+
Sbjct: 705 SRFDMEFTFVVTSNYTDANNGHALNQVYQIMYI 737


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,989,343
Number of Sequences: 219361
Number of extensions: 460832
Number of successful extensions: 1234
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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