>NEOR_STRCY (P14501) Neomycin resistance protein|
          Length = 437

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 21/61 (34%), Positives = 27/61 (44%)
 Frame = +2

Query: 59  PIPGSEPAPDRRREVARGQGAAEDPVGEQRRSPSKVKLMDITEVLLATQSHDGQIRNAAE 238
           P+P   P PDRRR   R  G    P   +RR    V++ D     L  +S D  +  A E
Sbjct: 314 PLPAPAPGPDRRRHRGRRHGRPV-PDRRRRRFRDGVQIWDRAWKGLVGRSLDLAVVEAVE 372

Query: 239 G 241
           G
Sbjct: 373 G 373

>CCNAL_DAUCA (P25010) G2/mitotic-specific cyclin C13-1 (A-like cyclin)|
           (Fragment)
          Length = 341

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 201 RSPMMVRSEMLQKGISSNLRSRVFHSFCKHYLLSYQMITNLLYL 332
           R PMM   E +QK ++SN+R  V   +     L Y+++   LYL
Sbjct: 91  RRPMMNYIEQVQKDVTSNMRG-VLVDWLVEVSLEYKLLPETLYL 133

>MAST3_HUMAN (O60307) Microtubule-associated serine/threonine-protein kinase 3 (EC|
            2.7.11.1)
          Length = 1309

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 59   PIPGSEPAPDRRREVARGQGAAEDPVGEQ 145
            P+PG  PAP R   + RGQ A +   GE+
Sbjct: 1204 PLPGHPPAPARSPRLRRGQSADKLGTGER 1232

>INVO_AOTTR (P24708) Involucrin|
          Length = 544

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
 Frame = +2

Query: 41  EIPTDLPIPGSEPAPDRRREVARGQGAAEDPVGEQRRSPSKVKLMDITEVLLATQSH--D 214
           E+P +LP+ G     ++   + +G   A +   EQ++ P + KL          Q H   
Sbjct: 46  EVPVELPVEGPSKHEEKHMTIVKG---APEQECEQQQQPQEQKLQ---------QQHWEQ 93

Query: 215 GQIRNAAEGNIKQFEEQSFPQFLQALSAELSNDNK 319
            +    AE   +Q +++   +  Q L  +L  + K
Sbjct: 94  DEEHQKAENPEQQLKQEKAQREKQQLQGQLEEEKK 128

>IE18_PRVIF (P11675) Immediate-early protein IE180|
          Length = 1461

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 59  PIPGSEPAPDRRREVARGQGAAEDPVGEQ 145
           P  G +PAP+RR++  R  GA     GE+
Sbjct: 884 PAAGPDPAPERRKKKRRAPGARRPGDGEE 912

>IE18_PRVKA (P33479) Immediate-early protein IE180|
          Length = 1446

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 59  PIPGSEPAPDRRREVARGQGAAEDPVGEQ 145
           P  G +PAP+RR++  R  GA     GE+
Sbjct: 873 PAAGPDPAPERRKKKRRAPGARRPGDGEE 901

>ASD4_NEUCR (Q9HEV5) GATA type zinc finger protein Asd4 (Ascus development|
           protein 4)
          Length = 426

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 44  IPTDLPIPGSEPAPDRRREVARGQGAAE--DPVGEQRRSPSKVKLMDITE 187
           IPT + I  + PAP    E A  Q  A   +PV EQ + P    + + TE
Sbjct: 323 IPTPMAIDEATPAPAPAPEAAPEQAPAPAPEPVQEQAQEPEPAPVSEPTE 372

>TONB_HELPY (O25899) Protein tonB|
          Length = 285

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 7/100 (7%)
 Frame = +2

Query: 47  PTDLPIPGSEPAPDRRREVARGQGAAEDPVGE-------QRRSPSKVKLMDITEVLLATQ 205
           P   P P  EP P+ + E  + +   E+P  E       ++ +P +V   DI +     Q
Sbjct: 114 PEPKPEPKPEPKPEPKVEEVKKEEPKEEPKKEEAKEEAKEKSAPKQVTTKDIVKE-KDKQ 172

Query: 206 SHDGQIRNAAEGNIKQFEEQSFPQFLQALSAELSNDNKPP 325
               +    A    + +      +FL  +   +S+ N+ P
Sbjct: 173 EESNKTSEGATSEAQAYNPGVSNEFLMKIQTAISSKNRYP 212

>RGA1_YEAST (P39083) Rho-type GTPase-activating protein 1|
          Length = 1007

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 327 TGGLLSFDSSADNACRNCGKLCSSNCLIFPSA 232
           TG L+ FD S  ++C+NCGK      +I  S+
Sbjct: 58  TGALICFDCS--DSCKNCGKKIDDLAIILSSS 87

>ARHG4_HUMAN (Q9NR80) Rho guanine nucleotide exchange factor 4 (APC-stimulated|
           guanine nucleotide exchange factor) (Asef)
          Length = 657

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 18/71 (25%), Positives = 33/71 (46%)
 Frame = +2

Query: 56  LPIPGSEPAPDRRREVARGQGAAEDPVGEQRRSPSKVKLMDITEVLLATQSHDGQIRNAA 235
           L +   EPA D       G   AED   E + S  +++   I E+L   + +   +R+  
Sbjct: 217 LRVNQDEPADDDAP--LAGNSGAEDGGAEAQSSKDQMRTNVINEILSTERDYIKHLRDIC 274

Query: 236 EGNIKQFEEQS 268
           EG ++Q  +++
Sbjct: 275 EGYVRQCRKRA 285

>YAW8_SCHPO (Q10183) Hypothetical protein C3F10.08c in chromosome I|
          Length = 259

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 20/82 (24%), Positives = 34/82 (41%)
 Frame = +2

Query: 89  RRREVARGQGAAEDPVGEQRRSPSKVKLMDITEVLLATQSHDGQIRNAAEGNIKQFEEQS 268
           R+R      G+ +D V   +      KL+  + +L    S  GQ++  AEG I+    Q 
Sbjct: 117 RKRSRQNDDGSDDDEVENLKNDLELQKLLRESHLLHEATSRTGQVQLVAEGKIRHKVVQ- 175

Query: 269 FPQFLQALSAELSNDNKPPVSR 334
             Q +  L  +   +  P  +R
Sbjct: 176 --QHIAQLGGKKETEKMPMAAR 195

>STAR8_HUMAN (Q92502) StAR-related lipid transfer protein 8 (StARD8) (START|
           domain-containing protein 8)
          Length = 1023

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
 Frame = +2

Query: 47  PTDLPIPGSEPAPDRRREVA--RGQGAAEDPVGEQRRSPSKVKLMDITEVLLATQSHDGQ 220
           P DLP+PG  P+   R  ++  +GQ   +D   ++ R+ S +K ++       + S   +
Sbjct: 89  PADLPLPGRAPSSSDRPLLSPTQGQEGPQDKAKKRHRNRSFLKHLESLRRKEKSGSQQAE 148

Query: 221 IRNAAEGNIKQFEEQSFPQFLQALSA 298
            +++   + K  +  SF      LSA
Sbjct: 149 PKHSPATSEKVSKASSFRSCRGFLSA 174

>THTM_ECOLI (P31142) 3-mercaptopyruvate sulfurtransferase (EC 2.8.1.2)|
           (Rhodanese-like protein) (MST)
          Length = 280

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = +2

Query: 89  RRREVARGQGAAEDPVGEQRRSPSKVKLMDITEVLLATQSHDGQIRNA 232
           +R ++   +GA E P GE   + +   ++ +T+VLLA+  +  QI +A
Sbjct: 126 QRDDLLLEEGAVELPEGEFNAAFNPEAVVKVTDVLLASHENTAQIIDA 173

>THTM_ECO57 (P58388) 3-mercaptopyruvate sulfurtransferase (EC 2.8.1.2)|
           (Rhodanese-like protein) (MST)
          Length = 280

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = +2

Query: 89  RRREVARGQGAAEDPVGEQRRSPSKVKLMDITEVLLATQSHDGQIRNA 232
           +R ++   +GA E P GE   + +   ++ +T+VLLA+  +  QI +A
Sbjct: 126 QRDDLLLEEGAVELPEGEFNAAFNPEAVVKVTDVLLASHENTAQIIDA 173

>K6PF1_KLULA (Q03215) 6-phosphofructokinase alpha subunit (EC 2.7.1.11)|
           (Phosphofructokinase 1) (Phosphohexokinase) (6PF-1-K
           alpha subunit)
          Length = 992

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 143 QRRSPSKVKLMD-ITEVLLATQSHDGQIRNAAE 238
           +R     VKL+D +  V+L T SHDG+  NA+E
Sbjct: 127 ERVDDHNVKLVDPLGNVVLVTDSHDGKELNASE 159

>DNAA_MYCPA (Q9L7L7) Chromosomal replication initiator protein dnaA|
          Length = 509

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 53  DLPIPGSEPAPDRRREVARGQGAAEDPV 136
           D PIP +EP PD    ++   GA  +PV
Sbjct: 109 DAPIPPAEPFPDTDAALSADDGADGEPV 136

>TBX40_CAEEL (Q9NA55) Putative T-box protein 40|
          Length = 380

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 11/60 (18%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
 Frame = +2

Query: 107 RGQGAAEDPVGEQRRSPSKVKLMDITEVLLATQSHD-----GQIRNAAEGNIKQFEEQSF 271
           +   + E+P  ++ ++ +++ ++DI +V   +++++     G+++N    +I QF   S+
Sbjct: 198 KNTNSREEPSSKRSKNETEIAVLDILQVASQSENYNESTNSGRLQNEISSSIHQFPSTSY 257

>ZN341_HUMAN (Q9BYN7) Zinc finger protein 341|
          Length = 854

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 110 GQGAAEDPVGEQRRSPSKVKLMDITEVLL 196
           GQGA  DP G+   +P  ++ +D  +V L
Sbjct: 26  GQGAVPDPTGQSVNAPPAIQPLDDEDVFL 54

>YBO0_YEAST (P38222) Protein YBR030W|
          Length = 552

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = -3

Query: 323 EVCYHLIAQQIMLAETVENSAPQIA 249
           ++C HLIA++ + AE ++ + P++A
Sbjct: 248 DMCKHLIAEEYLEAENLDKNMPKVA 272

>NSD1_HUMAN (Q96L73) Histone-lysine N-methyltransferase, H3 lysine-36 and H4|
            lysine-20 specific (EC 2.1.1.43) (H3-K36-HMTase)
            (H4-K20-HMTase) (Nuclear receptor binding SET domain
            containing protein 1) (NR-binding SET domain containing
            protein) (Androgen r
          Length = 2696

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 212  DGQIRNAAEGNIKQFEEQSFPQFLQALSAELSNDNKPP 325
            DG  + A +    +FEE    + L+ L  +  ND KPP
Sbjct: 1831 DGTYKKALQEAAARFEELKAQKELRQLQEDRKNDKKPP 1868

>SYC1_STRAW (Q82GD0) Cysteinyl-tRNA synthetase 1 (EC 6.1.1.16) (Cysteine--tRNA|
           ligase 1) (CysRS 1)
          Length = 466

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +2

Query: 233 AEGNIKQFEEQSFPQFLQALSAELSNDNKP 322
           A+GN+  F+ +SFP++LQ  + EL N  +P
Sbjct: 138 ADGNV-YFDVRSFPEYLQLSNQELDNLLQP 166


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,024,701
Number of Sequences: 219361
Number of extensions: 557303
Number of successful extensions: 2174
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2159
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)