Clone Name | bastl09h10 |
---|---|
Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 85.7 bits (43), Expect = 8e-14 Identities = 133/163 (81%) Strand = Plus / Minus Query: 172 aatggatatcactgaggttctgctagctacgcagtcccatgatggtcagatccgaaatgc 231 |||||||||||| |||||||||||||| ||||||| ||||| |||||| | |||| || Sbjct: 10255005 aatggatatcacacaggttctgctagctgcgcagtcacatgacggtcagctacgaactgt 10254946 Query: 232 tgcagaagggaatatcaagcaatttgaggagcagagttttccacagtttctgcaagcatt 291 ||| || | ||| ||||||||||| || |||||| ||||||||| ||||| ||| | | Sbjct: 10254945 tgctgaggaaaatctcaagcaatttcagcagcagaattttccacattttcttcaaacgct 10254886 Query: 292 atctgctgagctatcaaatgataacaaacctcctgtatctcga 334 ||| | |||||| || |||||| | || ||||||| ||||||| Sbjct: 10254885 atcagttgagctgtccaatgatgagaaccctcctgaatctcga 10254843
>gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0045E22, from chromosome 3, complete sequence Length = 160920 Score = 85.7 bits (43), Expect = 8e-14 Identities = 133/163 (81%) Strand = Plus / Minus Query: 172 aatggatatcactgaggttctgctagctacgcagtcccatgatggtcagatccgaaatgc 231 |||||||||||| |||||||||||||| ||||||| ||||| |||||| | |||| || Sbjct: 116418 aatggatatcacacaggttctgctagctgcgcagtcacatgacggtcagctacgaactgt 116359 Query: 232 tgcagaagggaatatcaagcaatttgaggagcagagttttccacagtttctgcaagcatt 291 ||| || | ||| ||||||||||| || |||||| ||||||||| ||||| ||| | | Sbjct: 116358 tgctgaggaaaatctcaagcaatttcagcagcagaattttccacattttcttcaaacgct 116299 Query: 292 atctgctgagctatcaaatgataacaaacctcctgtatctcga 334 ||| | |||||| || |||||| | || ||||||| ||||||| Sbjct: 116298 atcagttgagctgtccaatgatgagaaccctcctgaatctcga 116256
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 85.7 bits (43), Expect = 8e-14 Identities = 133/163 (81%) Strand = Plus / Minus Query: 172 aatggatatcactgaggttctgctagctacgcagtcccatgatggtcagatccgaaatgc 231 |||||||||||| |||||||||||||| ||||||| ||||| |||||| | |||| || Sbjct: 10253106 aatggatatcacacaggttctgctagctgcgcagtcacatgacggtcagctacgaactgt 10253047 Query: 232 tgcagaagggaatatcaagcaatttgaggagcagagttttccacagtttctgcaagcatt 291 ||| || | ||| ||||||||||| || |||||| ||||||||| ||||| ||| | | Sbjct: 10253046 tgctgaggaaaatctcaagcaatttcagcagcagaattttccacattttcttcaaacgct 10252987 Query: 292 atctgctgagctatcaaatgataacaaacctcctgtatctcga 334 ||| | |||||| || |||||| | || ||||||| ||||||| Sbjct: 10252986 atcagttgagctgtccaatgatgagaaccctcctgaatctcga 10252944
>emb|AL607086.19| Mouse DNA sequence from clone RP23-269B7 on chromosome 4, complete sequence Length = 193830 Score = 46.1 bits (23), Expect = 0.072 Identities = 23/23 (100%) Strand = Plus / Plus Query: 283 gcaagcattatctgctgagctat 305 ||||||||||||||||||||||| Sbjct: 181260 gcaagcattatctgctgagctat 181282
>ref|NM_124543.2| Arabidopsis thaliana YLS7 AT5G51640 (YLS7) mRNA, complete cds Length = 1830 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 167 aagctaatggatatcactgagg 188 |||||||||||||||||||||| Sbjct: 1382 aagctaatggatatcactgagg 1403
>gb|AY133873.1| Arabidopsis thaliana clone U11059 unknown protein (At5g51640) mRNA, complete cds Length = 1537 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 167 aagctaatggatatcactgagg 188 |||||||||||||||||||||| Sbjct: 1279 aagctaatggatatcactgagg 1300
>gb|AY080801.1| Arabidopsis thaliana unknown protein (At5g51640) mRNA, complete cds Length = 1846 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 167 aagctaatggatatcactgagg 188 |||||||||||||||||||||| Sbjct: 1382 aagctaatggatatcactgagg 1403
>dbj|AB018109.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K17N15 Length = 81293 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 167 aagctaatggatatcactgagg 188 |||||||||||||||||||||| Sbjct: 74203 aagctaatggatatcactgagg 74182
>dbj|AB047810.1| Arabidopsis thaliana YLS7 mRNA for leaf-senescence-related protein, complete cds Length = 1695 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 167 aagctaatggatatcactgagg 188 |||||||||||||||||||||| Sbjct: 1297 aagctaatggatatcactgagg 1318
>emb|BX057361.1|CNS09GF9 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC37BB06 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 391 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 116 ggagcagcggaggatcccgtc 136 ||||||||||||||||||||| Sbjct: 179 ggagcagcggaggatcccgtc 199
>emb|AL627170.5| Zebrafish DNA sequence from clone XX-KT73 Contains a novel gene, a reverse transcriptase pseudogene and a novel gene similar to SLC17A6 (solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6), complete sequence Length = 87485 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 225 gaaatgctgcagaagggaatatcaa 249 |||||| |||||||||||||||||| Sbjct: 34795 gaaatgttgcagaagggaatatcaa 34771
>emb|AL627163.3| Zebrafish DNA sequence from clone XX-KT90 Contains part of a novel gene and a novel gene similar to SLC17A6 (solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6), complete sequence Length = 93831 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 225 gaaatgctgcagaagggaatatcaa 249 |||||| |||||||||||||||||| Sbjct: 68449 gaaatgttgcagaagggaatatcaa 68473
>emb|BX537356.4| Zebrafish DNA sequence from clone DKEY-46P12 in linkage group 7, complete sequence Length = 105480 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 225 gaaatgctgcagaagggaatatcaa 249 |||||| |||||||||||||||||| Sbjct: 38939 gaaatgttgcagaagggaatatcaa 38963
>gb|AC018489.7| Drosophila melanogaster clone BACR19G19, complete sequence Length = 179077 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gcagcggaggatcccgtcgg 138 |||||||||||||||||||| Sbjct: 87696 gcagcggaggatcccgtcgg 87715
>gb|AC022349.3| Drosophila melanogaster clone BACR33D04, complete sequence Length = 177576 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gcagcggaggatcccgtcgg 138 |||||||||||||||||||| Sbjct: 14060 gcagcggaggatcccgtcgg 14079
>ref|XM_958009.1| Neurospora crassa OR74A hypothetical protein (NCU06251.1) partial mRNA Length = 1116 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 cgatcgccgccgagaggttg 104 |||||||||||||||||||| Sbjct: 695 cgatcgccgccgagaggttg 676
>ref|XM_326105.1| Neurospora crassa OR74A hypothetical protein (NCU06251.1) partial mRNA Length = 1116 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 cgatcgccgccgagaggttg 104 |||||||||||||||||||| Sbjct: 695 cgatcgccgccgagaggttg 676
>emb|BX927369.10| Zebrafish DNA sequence from clone CH211-134A4 in linkage group 21, complete sequence Length = 184052 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 caagcaatttgaggagcaga 266 |||||||||||||||||||| Sbjct: 143666 caagcaatttgaggagcaga 143647
>emb|BX065028.1|CNS09MC8 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC48DA03 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 930 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 gagcagcggaggatcccgtc 136 |||||||||||||||||||| Sbjct: 258 gagcagcggaggatcccgtc 277
>emb|BX060788.1|CNS09J2G Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC41BC10 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 981 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 gagcagcggaggatcccgtc 136 |||||||||||||||||||| Sbjct: 263 gagcagcggaggatcccgtc 282
>emb|BX040853.1|CNS093OP Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC11DF08 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 276 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 gagcagcggaggatcccgtc 136 |||||||||||||||||||| Sbjct: 226 gagcagcggaggatcccgtc 245
>emb|BX027200.1|CNS08T5G Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA40DA12 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 989 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 gagcagcggaggatcccgtc 136 |||||||||||||||||||| Sbjct: 179 gagcagcggaggatcccgtc 198
>emb|BX025559.1|CNS08RVV Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA39AG08 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 320 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 gagcagcggaggatcccgtc 136 |||||||||||||||||||| Sbjct: 172 gagcagcggaggatcccgtc 191
>ref|NM_132945.2| Drosophila melanogaster CG4872-RA (CG4872), mRNA Length = 1268 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 gcagcggaggatcccgtcgg 138 |||||||||||||||||||| Sbjct: 419 gcagcggaggatcccgtcgg 400
>gb|AC096576.3| Homo sapiens BAC clone RP11-556G22 from 4, complete sequence Length = 213044 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 agatccgaaatgctgcagaa 238 |||||||||||||||||||| Sbjct: 26878 agatccgaaatgctgcagaa 26859
>gb|AY075313.1| Drosophila melanogaster GH02315 full length cDNA Length = 1279 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 gcagcggaggatcccgtcgg 138 |||||||||||||||||||| Sbjct: 419 gcagcggaggatcccgtcgg 400
>ref|XM_313558.2| Anopheles gambiae str. PEST ENSANGP00000013381 (ENSANGG00000010892), partial mRNA Length = 1869 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 gagcagcggaggatcccgtc 136 |||||||||||||||||||| Sbjct: 176 gagcagcggaggatcccgtc 195
>gb|AF080235.1|AF080235 Streptomyces cyanogenus landomycin biosynthetic gene cluster, complete sequence Length = 34644 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 cccgggttcggaaccggctc 83 |||||||||||||||||||| Sbjct: 34113 cccgggttcggaaccggctc 34132
>gb|AE003503.4| Drosophila melanogaster chromosome X, section 55 of 74 of the complete sequence Length = 300468 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 gcagcggaggatcccgtcgg 138 |||||||||||||||||||| Sbjct: 244329 gcagcggaggatcccgtcgg 244310 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,053,028 Number of Sequences: 3902068 Number of extensions: 2053028 Number of successful extensions: 40639 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40585 Number of HSP's gapped (non-prelim): 54 length of query: 334 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 312 effective length of database: 17,147,199,772 effective search space: 5349926328864 effective search space used: 5349926328864 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)