ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl09h10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 86 8e-14
2gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare str... 86 8e-14
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 86 8e-14
4emb|AL607086.19| Mouse DNA sequence from clone RP23-269B7 on chr... 46 0.072
5ref|NM_124543.2| Arabidopsis thaliana YLS7 AT5G51640 (YLS7) mRNA... 44 0.28
6gb|AY133873.1| Arabidopsis thaliana clone U11059 unknown protein... 44 0.28
7gb|AY080801.1| Arabidopsis thaliana unknown protein (At5g51640) ... 44 0.28
8dbj|AB018109.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 44 0.28
9dbj|AB047810.1| Arabidopsis thaliana YLS7 mRNA for leaf-senescen... 44 0.28
10emb|BX057361.1|CNS09GF9 Single read from an extremity of a full-... 42 1.1
11emb|AL627170.5| Zebrafish DNA sequence from clone XX-KT73 Contai... 42 1.1
12emb|AL627163.3| Zebrafish DNA sequence from clone XX-KT90 Contai... 42 1.1
13emb|BX537356.4| Zebrafish DNA sequence from clone DKEY-46P12 in ... 42 1.1
14gb|AC018489.7| Drosophila melanogaster clone BACR19G19, complete... 40 4.4
15gb|AC022349.3| Drosophila melanogaster clone BACR33D04, complete... 40 4.4
16ref|XM_958009.1| Neurospora crassa OR74A hypothetical protein (N... 40 4.4
17ref|XM_326105.1| Neurospora crassa OR74A hypothetical protein (N... 40 4.4
18emb|BX927369.10| Zebrafish DNA sequence from clone CH211-134A4 i... 40 4.4
19emb|BX065028.1|CNS09MC8 Single read from an extremity of a full-... 40 4.4
20emb|BX060788.1|CNS09J2G Single read from an extremity of a full-... 40 4.4
21emb|BX040853.1|CNS093OP Single read from an extremity of a full-... 40 4.4
22emb|BX027200.1|CNS08T5G Single read from an extremity of a full-... 40 4.4
23emb|BX025559.1|CNS08RVV Single read from an extremity of a full-... 40 4.4
24ref|NM_132945.2| Drosophila melanogaster CG4872-RA (CG4872), mRNA 40 4.4
25gb|AC096576.3| Homo sapiens BAC clone RP11-556G22 from 4, comple... 40 4.4
26gb|AY075313.1| Drosophila melanogaster GH02315 full length cDNA 40 4.4
27ref|XM_313558.2| Anopheles gambiae str. PEST ENSANGP00000013381 ... 40 4.4
28gb|AF080235.1|AF080235 Streptomyces cyanogenus landomycin biosyn... 40 4.4
29gb|AE003503.4| Drosophila melanogaster chromosome X, section 55 ... 40 4.4

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 133/163 (81%)
 Strand = Plus / Minus

                                                                            
Query: 172      aatggatatcactgaggttctgctagctacgcagtcccatgatggtcagatccgaaatgc 231
                ||||||||||||  |||||||||||||| ||||||| ||||| |||||| | |||| || 
Sbjct: 10255005 aatggatatcacacaggttctgctagctgcgcagtcacatgacggtcagctacgaactgt 10254946

                                                                            
Query: 232      tgcagaagggaatatcaagcaatttgaggagcagagttttccacagtttctgcaagcatt 291
                ||| || |  ||| ||||||||||| || |||||| ||||||||| ||||| ||| |  |
Sbjct: 10254945 tgctgaggaaaatctcaagcaatttcagcagcagaattttccacattttcttcaaacgct 10254886

                                                           
Query: 292      atctgctgagctatcaaatgataacaaacctcctgtatctcga 334
                ||| | |||||| || |||||| | || ||||||| |||||||
Sbjct: 10254885 atcagttgagctgtccaatgatgagaaccctcctgaatctcga 10254843



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>gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0045E22, from chromosome 3, complete sequence
          Length = 160920

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 133/163 (81%)
 Strand = Plus / Minus

                                                                          
Query: 172    aatggatatcactgaggttctgctagctacgcagtcccatgatggtcagatccgaaatgc 231
              ||||||||||||  |||||||||||||| ||||||| ||||| |||||| | |||| || 
Sbjct: 116418 aatggatatcacacaggttctgctagctgcgcagtcacatgacggtcagctacgaactgt 116359

                                                                          
Query: 232    tgcagaagggaatatcaagcaatttgaggagcagagttttccacagtttctgcaagcatt 291
              ||| || |  ||| ||||||||||| || |||||| ||||||||| ||||| ||| |  |
Sbjct: 116358 tgctgaggaaaatctcaagcaatttcagcagcagaattttccacattttcttcaaacgct 116299

                                                         
Query: 292    atctgctgagctatcaaatgataacaaacctcctgtatctcga 334
              ||| | |||||| || |||||| | || ||||||| |||||||
Sbjct: 116298 atcagttgagctgtccaatgatgagaaccctcctgaatctcga 116256



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 133/163 (81%)
 Strand = Plus / Minus

                                                                            
Query: 172      aatggatatcactgaggttctgctagctacgcagtcccatgatggtcagatccgaaatgc 231
                ||||||||||||  |||||||||||||| ||||||| ||||| |||||| | |||| || 
Sbjct: 10253106 aatggatatcacacaggttctgctagctgcgcagtcacatgacggtcagctacgaactgt 10253047

                                                                            
Query: 232      tgcagaagggaatatcaagcaatttgaggagcagagttttccacagtttctgcaagcatt 291
                ||| || |  ||| ||||||||||| || |||||| ||||||||| ||||| ||| |  |
Sbjct: 10253046 tgctgaggaaaatctcaagcaatttcagcagcagaattttccacattttcttcaaacgct 10252987

                                                           
Query: 292      atctgctgagctatcaaatgataacaaacctcctgtatctcga 334
                ||| | |||||| || |||||| | || ||||||| |||||||
Sbjct: 10252986 atcagttgagctgtccaatgatgagaaccctcctgaatctcga 10252944



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>emb|AL607086.19| Mouse DNA sequence from clone RP23-269B7 on chromosome 4, complete
              sequence
          Length = 193830

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 283    gcaagcattatctgctgagctat 305
              |||||||||||||||||||||||
Sbjct: 181260 gcaagcattatctgctgagctat 181282



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>ref|NM_124543.2| Arabidopsis thaliana YLS7 AT5G51640 (YLS7) mRNA, complete cds
          Length = 1830

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 167  aagctaatggatatcactgagg 188
            ||||||||||||||||||||||
Sbjct: 1382 aagctaatggatatcactgagg 1403



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>gb|AY133873.1| Arabidopsis thaliana clone U11059 unknown protein (At5g51640) mRNA,
            complete cds
          Length = 1537

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 167  aagctaatggatatcactgagg 188
            ||||||||||||||||||||||
Sbjct: 1279 aagctaatggatatcactgagg 1300



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>gb|AY080801.1| Arabidopsis thaliana unknown protein (At5g51640) mRNA, complete cds
          Length = 1846

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 167  aagctaatggatatcactgagg 188
            ||||||||||||||||||||||
Sbjct: 1382 aagctaatggatatcactgagg 1403



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>dbj|AB018109.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K17N15
          Length = 81293

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 167   aagctaatggatatcactgagg 188
             ||||||||||||||||||||||
Sbjct: 74203 aagctaatggatatcactgagg 74182



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>dbj|AB047810.1| Arabidopsis thaliana YLS7 mRNA for leaf-senescence-related protein,
            complete cds
          Length = 1695

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 167  aagctaatggatatcactgagg 188
            ||||||||||||||||||||||
Sbjct: 1297 aagctaatggatatcactgagg 1318



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>emb|BX057361.1|CNS09GF9 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC37BB06 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 391

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 116 ggagcagcggaggatcccgtc 136
           |||||||||||||||||||||
Sbjct: 179 ggagcagcggaggatcccgtc 199



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>emb|AL627170.5| Zebrafish DNA sequence from clone XX-KT73 Contains a novel gene, a
             reverse transcriptase pseudogene and a novel gene similar
             to SLC17A6 (solute carrier family 17 (sodium-dependent
             inorganic phosphate cotransporter), member 6), complete
             sequence
          Length = 87485

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 225   gaaatgctgcagaagggaatatcaa 249
             |||||| ||||||||||||||||||
Sbjct: 34795 gaaatgttgcagaagggaatatcaa 34771



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>emb|AL627163.3| Zebrafish DNA sequence from clone XX-KT90 Contains part of a novel gene
             and a novel gene similar to SLC17A6 (solute carrier family
             17 (sodium-dependent inorganic phosphate cotransporter),
             member 6), complete sequence
          Length = 93831

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 225   gaaatgctgcagaagggaatatcaa 249
             |||||| ||||||||||||||||||
Sbjct: 68449 gaaatgttgcagaagggaatatcaa 68473



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>emb|BX537356.4| Zebrafish DNA sequence from clone DKEY-46P12 in linkage group 7,
             complete sequence
          Length = 105480

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 225   gaaatgctgcagaagggaatatcaa 249
             |||||| ||||||||||||||||||
Sbjct: 38939 gaaatgttgcagaagggaatatcaa 38963



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>gb|AC018489.7| Drosophila melanogaster clone BACR19G19, complete sequence
          Length = 179077

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 119   gcagcggaggatcccgtcgg 138
             ||||||||||||||||||||
Sbjct: 87696 gcagcggaggatcccgtcgg 87715



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>gb|AC022349.3| Drosophila melanogaster clone BACR33D04, complete sequence
          Length = 177576

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 119   gcagcggaggatcccgtcgg 138
             ||||||||||||||||||||
Sbjct: 14060 gcagcggaggatcccgtcgg 14079



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>ref|XM_958009.1| Neurospora crassa OR74A hypothetical protein (NCU06251.1) partial
           mRNA
          Length = 1116

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 85  cgatcgccgccgagaggttg 104
           ||||||||||||||||||||
Sbjct: 695 cgatcgccgccgagaggttg 676



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>ref|XM_326105.1| Neurospora crassa OR74A hypothetical protein (NCU06251.1) partial
           mRNA
          Length = 1116

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 85  cgatcgccgccgagaggttg 104
           ||||||||||||||||||||
Sbjct: 695 cgatcgccgccgagaggttg 676



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>emb|BX927369.10| Zebrafish DNA sequence from clone CH211-134A4 in linkage group 21,
              complete sequence
          Length = 184052

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 247    caagcaatttgaggagcaga 266
              ||||||||||||||||||||
Sbjct: 143666 caagcaatttgaggagcaga 143647



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>emb|BX065028.1|CNS09MC8 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC48DA03 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 930

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 117 gagcagcggaggatcccgtc 136
           ||||||||||||||||||||
Sbjct: 258 gagcagcggaggatcccgtc 277



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>emb|BX060788.1|CNS09J2G Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC41BC10 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 981

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 117 gagcagcggaggatcccgtc 136
           ||||||||||||||||||||
Sbjct: 263 gagcagcggaggatcccgtc 282



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>emb|BX040853.1|CNS093OP Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC11DF08 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 276

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 117 gagcagcggaggatcccgtc 136
           ||||||||||||||||||||
Sbjct: 226 gagcagcggaggatcccgtc 245



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>emb|BX027200.1|CNS08T5G Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA40DA12 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 989

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 117 gagcagcggaggatcccgtc 136
           ||||||||||||||||||||
Sbjct: 179 gagcagcggaggatcccgtc 198



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>emb|BX025559.1|CNS08RVV Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA39AG08 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 320

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 117 gagcagcggaggatcccgtc 136
           ||||||||||||||||||||
Sbjct: 172 gagcagcggaggatcccgtc 191



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>ref|NM_132945.2| Drosophila melanogaster CG4872-RA (CG4872), mRNA
          Length = 1268

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 119 gcagcggaggatcccgtcgg 138
           ||||||||||||||||||||
Sbjct: 419 gcagcggaggatcccgtcgg 400



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>gb|AC096576.3| Homo sapiens BAC clone RP11-556G22 from 4, complete sequence
          Length = 213044

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   agatccgaaatgctgcagaa 238
             ||||||||||||||||||||
Sbjct: 26878 agatccgaaatgctgcagaa 26859



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>gb|AY075313.1| Drosophila melanogaster GH02315 full length cDNA
          Length = 1279

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 119 gcagcggaggatcccgtcgg 138
           ||||||||||||||||||||
Sbjct: 419 gcagcggaggatcccgtcgg 400



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>ref|XM_313558.2| Anopheles gambiae str. PEST ENSANGP00000013381
           (ENSANGG00000010892), partial mRNA
          Length = 1869

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 117 gagcagcggaggatcccgtc 136
           ||||||||||||||||||||
Sbjct: 176 gagcagcggaggatcccgtc 195



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>gb|AF080235.1|AF080235 Streptomyces cyanogenus landomycin biosynthetic gene cluster, complete
             sequence
          Length = 34644

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 64    cccgggttcggaaccggctc 83
             ||||||||||||||||||||
Sbjct: 34113 cccgggttcggaaccggctc 34132



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>gb|AE003503.4| Drosophila melanogaster chromosome X, section 55 of 74 of the complete
              sequence
          Length = 300468

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 119    gcagcggaggatcccgtcgg 138
              ||||||||||||||||||||
Sbjct: 244329 gcagcggaggatcccgtcgg 244310


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,053,028
Number of Sequences: 3902068
Number of extensions: 2053028
Number of successful extensions: 40639
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40585
Number of HSP's gapped (non-prelim): 54
length of query: 334
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 312
effective length of database: 17,147,199,772
effective search space: 5349926328864
effective search space used: 5349926328864
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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