ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl09h09 |
|---|---|
| Clone Library Name | barley_pub |
>E2AK3_RAT (Q9Z1Z1) Eukaryotic translation initiation factor 2-alpha kinase 3| precursor (EC 2.7.11.1) (PRKR-like endoplasmic reticulum kinase) (Pancreatic eIF2-alpha kinase) Length = 1108 Score = 32.0 bits (71), Expect = 0.39 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%) Frame = +2 Query: 23 PSSQKIYSSLPLYICPAHFLLSWLPKHPPSEDQRSRFFLDVALL---ATSLLHDRG 181 PSS K+Y + + +C L W+ + ED+ R L + L A LH +G Sbjct: 869 PSSPKVYLYIQMQLCRKENLKDWMNRRCSMEDREHRVCLHIFLQIAEAVQFLHSKG 924
>MRGRE_MACFA (Q5U9D7) Mas-related G-protein coupled receptor member E| Length = 311 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Frame = +3 Query: 39 SIVVCLSIYALRISCFPGYQNTRHPK-ISAAVSFLTWHCSLLV 164 S++V +S+ + FP + + R P+ ++ V LTW C LL+ Sbjct: 111 SLLVAVSVEQCLAALFPAWYSCRRPRHLTTCVCALTWACCLLL 153
>YQOC_CAEEL (Q09301) Putative RNA-binding protein EEED8.12| Length = 197 Score = 30.0 bits (66), Expect = 1.5 Identities = 17/48 (35%), Positives = 19/48 (39%) Frame = +3 Query: 186 GHGEAGRERQCHCRATAGREQGPGRQEREPAKHAVQGGERVRGGHAGR 329 GHG G R R PGRQ+ K+ G RGG GR Sbjct: 144 GHGVRGSSRGTFGRGRGAARGAPGRQQTVVVKYVYVNGPN-RGGRGGR 190
>YQO4_CAEEL (Q09295) Putative RNA-binding protein EEED8.4| Length = 237 Score = 30.0 bits (66), Expect = 1.5 Identities = 17/48 (35%), Positives = 19/48 (39%) Frame = +3 Query: 186 GHGEAGRERQCHCRATAGREQGPGRQEREPAKHAVQGGERVRGGHAGR 329 GHG G R R PGRQ+ K+ G RGG GR Sbjct: 184 GHGVRGSSRGTFGRGRGAARGAPGRQQTVVVKYVYVNGPN-RGGRGGR 230
>VIF_SIVTA (P89905) Virion infectivity factor (Vif) (SOR protein) (Q protein)| Length = 238 Score = 29.6 bits (65), Expect = 2.0 Identities = 17/43 (39%), Positives = 23/43 (53%) Frame = +3 Query: 54 LSIYALRISCFPGYQNTRHPKISAAVSFLTWHCSLLVCFTTAA 182 LS YA+ IS F +QNT +++ V+ HC CFT A Sbjct: 81 LSTYAVAIS-FENWQNTYKTEVTPDVADHMIHCHYFPCFTDRA 122
>RL15_HALMA (P12737) 50S ribosomal protein L15P (Hmal15) (Hl9)| Length = 164 Score = 28.9 bits (63), Expect = 3.3 Identities = 18/59 (30%), Positives = 26/59 (44%) Frame = +1 Query: 142 RGIARY*FASRPRLTGMGRQAGNGNAIAGPPPEENKGPDGKSASRRSTRFKEENAYVEV 318 RG + S G G + G G+A N P GKS +R + +EE A ++V Sbjct: 8 RGSRTHGGGSHKNRRGAGHRGGRGDAGRDKHEFHNHEPLGKSGFKRPQKVQEEAATIDV 66
>MAP1A_RAT (P34926) Microtubule-associated protein 1A (MAP 1A) [Contains: MAP1| light chain LC2] Length = 2774 Score = 28.9 bits (63), Expect = 3.3 Identities = 16/45 (35%), Positives = 20/45 (44%) Frame = +3 Query: 150 CSLLVCFTTAADGHGEAGRERQCHCRATAGREQGPGRQEREPAKH 284 C V F DG G R R C R + ++GP QE P +H Sbjct: 1669 CDRKVWFPHELDGQG--ARPRYCEERESTFLDEGPDEQEITPLQH 1711
>E2AK3_MOUSE (Q9Z2B5) Eukaryotic translation initiation factor 2-alpha kinase 3| precursor (EC 2.7.11.1) (PRKR-like endoplasmic reticulum kinase) (Pancreatic eIF2-alpha kinase) Length = 1114 Score = 28.9 bits (63), Expect = 3.3 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%) Frame = +2 Query: 23 PSSQKIYSSLPLYICPAHFLLSWLPKHPPSEDQRS----RFFLDVALLATSLLHDRG 181 PSS K+Y + + +C L W+ + ED+ FL +A A LH +G Sbjct: 875 PSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFLQIA-EAVEFLHSKG 930
>SYA_VIBVY (Q7MHR6) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 860 Score = 28.5 bits (62), Expect = 4.3 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = +2 Query: 158 TSLLHDRG*RAWGGRPGT 211 T + +D G WGGRPGT Sbjct: 182 TEIFYDHGEHIWGGRPGT 199
>SYA_VIBVU (Q8DC49) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 860 Score = 28.5 bits (62), Expect = 4.3 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = +2 Query: 158 TSLLHDRG*RAWGGRPGT 211 T + +D G WGGRPGT Sbjct: 182 TEIFYDHGEHIWGGRPGT 199
>SYA_VIBPA (Q87LR3) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 860 Score = 28.5 bits (62), Expect = 4.3 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = +2 Query: 158 TSLLHDRG*RAWGGRPGT 211 T + +D G WGGRPGT Sbjct: 182 TEIFYDHGEHIWGGRPGT 199
>SYA_VIBF1 (Q5E7G5) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 859 Score = 28.5 bits (62), Expect = 4.3 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = +2 Query: 158 TSLLHDRG*RAWGGRPGT 211 T + +D G WGGRPGT Sbjct: 181 TEIFYDHGEHIWGGRPGT 198
>DNL3_HUMAN (P49916) DNA ligase 3 (EC 6.5.1.1) (DNA ligase III)| (Polydeoxyribonucleotide synthase [ATP] 3) Length = 922 Score = 28.5 bits (62), Expect = 4.3 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +1 Query: 211 GNAIAGPPPEENKGPDGKSASRRS 282 G++ G EENKGP G + SR++ Sbjct: 759 GSSTTGGSSEENKGPSGSAVSRKA 782
>KHSE_AGRT5 (Q8UHA8) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)| Length = 322 Score = 28.1 bits (61), Expect = 5.7 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 6/69 (8%) Frame = -3 Query: 217 HCRSRPASPCPSAAVVKQTSSEQCHVKKETAALIFGWRVFW*PGKQEMRRAYIER----- 53 HCR A +SE +K+ A + GW+V W K E R +E+ Sbjct: 117 HCRE-----VGKALAAMHLASEGFEIKRPNALSVDGWKVLW--DKSEERADEVEKGLREE 169 Query: 52 -QTTIDFLA 29 + ID+LA Sbjct: 170 IRPEIDYLA 178
>AT5G1_SHEEP (P17605) ATP synthase lipid-binding protein, mitochondrial| precursor (EC 3.6.3.14) (ATP synthase proteolipid P1) (ATPase protein 9) (ATPase subunit C) Length = 136 Score = 28.1 bits (61), Expect = 5.7 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = +2 Query: 8 SKPEIPSSQKIYSSLPLYICPAHFLLS 88 S+PEIPS Q YSS PL + F S Sbjct: 31 SRPEIPSVQPSYSSGPLQVARREFQTS 57
>FILA_HUMAN (P20930) Filaggrin| Length = 4061 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = +3 Query: 171 TTAADGHGEAGRERQCHCRATAGREQG 251 T + HG+AG +Q H +T GR G Sbjct: 3676 TQSVSAHGQAGPHQQSHQESTRGRSAG 3702 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = +3 Query: 171 TTAADGHGEAGRERQCHCRATAGREQG 251 T + HG+AG +Q H +T GR G Sbjct: 2380 TQSVSAHGQAGPHQQSHQESTRGRSAG 2406 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +3 Query: 171 TTAADGHGEAGRERQCHCRATAGR 242 T + GHG+AG +Q H +T GR Sbjct: 434 TQSVSGHGKAGLRQQSHQESTRGR 457
>MACF1_MOUSE (Q9QXZ0) Microtubule-actin crosslinking factor 1 (Actin cross-linking| family 7) Length = 5327 Score = 27.7 bits (60), Expect = 7.4 Identities = 17/50 (34%), Positives = 22/50 (44%) Frame = -3 Query: 271 SRSCRPGPCSLPAVARQWHCRSRPASPCPSAAVVKQTSSEQCHVKKETAA 122 SR+ P S A C S P+SP A+ K SS +K+ T A Sbjct: 5165 SRAASPTRSSSSASQSNHSCTSMPSSPATPASGTKVISSSGSKLKRPTPA 5214
>WDR50_MOUSE (Q5SSI6) WD-repeat protein 50| Length = 552 Score = 27.3 bits (59), Expect = 9.7 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Frame = -3 Query: 268 RSCRPGPCSLPAVARQWHCRSRPASP--CPSAAVVKQTSSEQ 149 R RPG S PA A + R++PA P PSA + E+ Sbjct: 21 RKARPGSGSTPAKAARSSQRTQPAEPRAAPSAGSAAAAAEEE 62
>SLIT1_RAT (O88279) Slit homolog 1 protein precursor (Slit-1) (Multiple| epidermal growth factor-like domains 4) Length = 1531 Score = 27.3 bits (59), Expect = 9.7 Identities = 26/93 (27%), Positives = 35/93 (37%), Gaps = 2/93 (2%) Frame = +3 Query: 51 CLSIYALRISCF--PGYQNTRHPKISAAVSFLTWHCSLLVCFTTAADGHGEAGRERQCHC 224 C+ + AL SC GY ++ A C L C GH +A R HC Sbjct: 1388 CVPLDALAYSCQCQDGYSGALCNQVGAVAE----PCGGLQCL----HGHCQASATRGAHC 1439 Query: 225 RATAGREQGPGRQEREPAKHAVQGGERVRGGHA 323 + G QE E V+ RV+ G+A Sbjct: 1440 VCSPGFSGELCEQESECRGDPVRDFHRVQRGYA 1472
>TGBR3_PIG (P35054) TGF-beta receptor type III precursor (TGFR-3)| (Transforming growth factor beta receptor III) (Betaglycan) Length = 848 Score = 27.3 bits (59), Expect = 9.7 Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 12/89 (13%) Frame = +3 Query: 54 LSIYALRISCF------PGYQ------NTRHPKISAAVSFLTWHCSLLVCFTTAADGHGE 197 ++++AL SC PG Q N HP + SF + G Sbjct: 7 VALFALISSCLATAGPEPGVQCALSPVNASHPVQALMESFTV---------LSGCASRGT 57 Query: 198 AGRERQCHCRATAGREQGPGRQEREPAKH 284 GR ++ H +QGPG+++ E H Sbjct: 58 MGRPQEVHVLNLRAADQGPGQRQSEVTLH 86
>ISK5_HUMAN (Q9NQ38) Serine protease inhibitor Kazal-type 5 precursor| (Lympho-epithelial Kazal-type-related inhibitor) (LEKTI) [Contains: Hemofiltrate peptide HF6478; Hemofiltrate peptide HF7665] Length = 1064 Score = 27.3 bits (59), Expect = 9.7 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 12/56 (21%) Frame = +1 Query: 169 SRPRLTGMGRQAG------------NGNAIAGPPPEENKGPDGKSASRRSTRFKEE 300 SR R G G ++G NG I + +GPDGK+ + T KE+ Sbjct: 758 SRSRSNGTGSESGKDTCDEFRSQMKNGKLICTRESDPVRGPDGKTHGNKCTMCKEK 813
>TGBR3_RAT (P26342) TGF-beta receptor type III precursor (TGFR-3)| (Transforming growth factor beta receptor III) (Betaglycan) Length = 853 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%) Frame = +3 Query: 153 SLLVCFTTAAD--GHGEAGRERQCHCRATAGREQGPGRQEREPAKH 284 +L+ FT + G G R+ H +QGPG+++RE H Sbjct: 44 ALMESFTVLSGCASRGTTGLPREVHVLNLRSTDQGPGQRQREVTLH 89 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,258,650 Number of Sequences: 219361 Number of extensions: 996652 Number of successful extensions: 4052 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3847 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4046 length of database: 80,573,946 effective HSP length: 87 effective length of database: 61,489,539 effective search space used: 1475748936 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
