Clone Name | bastl09h09 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 87.7 bits (44), Expect = 2e-14 Identities = 62/68 (91%) Strand = Plus / Plus Query: 264 gagcgcgagccggcgaagcacgcggttcaaggaggagaacgcgtacgtggaggtcacgct 323 |||| |||||||||| |||||||||||||||||||| |||| |||||||||| ||||||| Sbjct: 21682466 gagctcgagccggcggagcacgcggttcaaggaggacaacgagtacgtggagatcacgct 21682525 Query: 324 ggacgtca 331 ||||||| Sbjct: 21682526 cgacgtca 21682533
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 87.7 bits (44), Expect = 2e-14 Identities = 62/68 (91%) Strand = Plus / Plus Query: 264 gagcgcgagccggcgaagcacgcggttcaaggaggagaacgcgtacgtggaggtcacgct 323 |||| |||||||||| |||||||||||||||||||| |||| |||||||||| ||||||| Sbjct: 21610811 gagctcgagccggcggagcacgcggttcaaggaggacaacgagtacgtggagatcacgct 21610870 Query: 324 ggacgtca 331 ||||||| Sbjct: 21610871 cgacgtca 21610878
>emb|AL731747.2|CNS08C7W Oryza sativa chromosome 12, . BAC OSJNBa0024C08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 186030 Score = 87.7 bits (44), Expect = 2e-14 Identities = 62/68 (91%) Strand = Plus / Minus Query: 264 gagcgcgagccggcgaagcacgcggttcaaggaggagaacgcgtacgtggaggtcacgct 323 |||| |||||||||| |||||||||||||||||||| |||| |||||||||| ||||||| Sbjct: 130085 gagctcgagccggcggagcacgcggttcaaggaggacaacgagtacgtggagatcacgct 130026 Query: 324 ggacgtca 331 ||||||| Sbjct: 130025 cgacgtca 130018
>emb|AL591173.6| Human DNA sequence from clone RP11-316O2 on chromosome 1, complete sequence Length = 78296 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 32 caaaaaatctatagtagtttgc 53 |||||||||||||||||||||| Sbjct: 33989 caaaaaatctatagtagtttgc 33968
>gb|AC122460.4| Mus musculus BAC clone RP24-283I1 from chromosome 19, complete sequence Length = 173119 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 cctgagatcccctccagcca 33 |||||||||||||||||||| Sbjct: 97012 cctgagatcccctccagcca 96993
>emb|CR382121.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome A of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1062590 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 gtttgcctctctatatatgc 67 |||||||||||||||||||| Sbjct: 857420 gtttgcctctctatatatgc 857439
>gb|AC104698.2| Homo sapiens BAC clone RP11-517F1 from 2, complete sequence Length = 115170 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 179 ggctgacgggcatggggaggcagg 202 |||||| ||||||||||||||||| Sbjct: 3595 ggctgatgggcatggggaggcagg 3572
>emb|AL669970.10| Human DNA sequence from clone RP11-473E2 on chromosome 9, complete sequence Length = 169247 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 309 cgtggaggtcacgctggacgtcagggcc 336 |||||||||||| ||||| ||||||||| Sbjct: 148114 cgtggaggtcactctggaggtcagggcc 148087
>gb|AC151413.2| Mus musculus BAC clone RP23-103N6 from 19, complete sequence Length = 230420 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 cctgagatcccctccagcca 33 |||||||||||||||||||| Sbjct: 7359 cctgagatcccctccagcca 7340 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,433,402 Number of Sequences: 3902068 Number of extensions: 2433402 Number of successful extensions: 39391 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39325 Number of HSP's gapped (non-prelim): 66 length of query: 336 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 314 effective length of database: 17,147,199,772 effective search space: 5384220728408 effective search space used: 5384220728408 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)