ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl09h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
2gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 88 2e-14
3emb|AL731747.2|CNS08C7W Oryza sativa chromosome 12, . BAC OSJNBa... 88 2e-14
4emb|AL591173.6| Human DNA sequence from clone RP11-316O2 on chro... 44 0.28
5gb|AC122460.4| Mus musculus BAC clone RP24-283I1 from chromosome... 40 4.4
6emb|CR382121.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 4.4
7gb|AC104698.2| Homo sapiens BAC clone RP11-517F1 from 2, complet... 40 4.4
8emb|AL669970.10| Human DNA sequence from clone RP11-473E2 on chr... 40 4.4
9gb|AC151413.2| Mus musculus BAC clone RP23-103N6 from 19, comple... 40 4.4

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 62/68 (91%)
 Strand = Plus / Plus

                                                                            
Query: 264      gagcgcgagccggcgaagcacgcggttcaaggaggagaacgcgtacgtggaggtcacgct 323
                |||| |||||||||| |||||||||||||||||||| |||| |||||||||| |||||||
Sbjct: 21682466 gagctcgagccggcggagcacgcggttcaaggaggacaacgagtacgtggagatcacgct 21682525

                        
Query: 324      ggacgtca 331
                 |||||||
Sbjct: 21682526 cgacgtca 21682533



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 62/68 (91%)
 Strand = Plus / Plus

                                                                            
Query: 264      gagcgcgagccggcgaagcacgcggttcaaggaggagaacgcgtacgtggaggtcacgct 323
                |||| |||||||||| |||||||||||||||||||| |||| |||||||||| |||||||
Sbjct: 21610811 gagctcgagccggcggagcacgcggttcaaggaggacaacgagtacgtggagatcacgct 21610870

                        
Query: 324      ggacgtca 331
                 |||||||
Sbjct: 21610871 cgacgtca 21610878



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>emb|AL731747.2|CNS08C7W Oryza sativa chromosome 12, . BAC OSJNBa0024C08 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 186030

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                          
Query: 264    gagcgcgagccggcgaagcacgcggttcaaggaggagaacgcgtacgtggaggtcacgct 323
              |||| |||||||||| |||||||||||||||||||| |||| |||||||||| |||||||
Sbjct: 130085 gagctcgagccggcggagcacgcggttcaaggaggacaacgagtacgtggagatcacgct 130026

                      
Query: 324    ggacgtca 331
               |||||||
Sbjct: 130025 cgacgtca 130018



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>emb|AL591173.6| Human DNA sequence from clone RP11-316O2 on chromosome 1, complete
             sequence
          Length = 78296

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 32    caaaaaatctatagtagtttgc 53
             ||||||||||||||||||||||
Sbjct: 33989 caaaaaatctatagtagtttgc 33968



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>gb|AC122460.4| Mus musculus BAC clone RP24-283I1 from chromosome 19, complete sequence
          Length = 173119

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    cctgagatcccctccagcca 33
             ||||||||||||||||||||
Sbjct: 97012 cctgagatcccctccagcca 96993



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>emb|CR382121.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome A of strain NRRL
              Y-1140 of Kluyveromyces lactis
          Length = 1062590

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 48     gtttgcctctctatatatgc 67
              ||||||||||||||||||||
Sbjct: 857420 gtttgcctctctatatatgc 857439



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>gb|AC104698.2| Homo sapiens BAC clone RP11-517F1 from 2, complete sequence
          Length = 115170

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 179  ggctgacgggcatggggaggcagg 202
            |||||| |||||||||||||||||
Sbjct: 3595 ggctgatgggcatggggaggcagg 3572



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>emb|AL669970.10| Human DNA sequence from clone RP11-473E2 on chromosome 9, complete
              sequence
          Length = 169247

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 309    cgtggaggtcacgctggacgtcagggcc 336
              |||||||||||| ||||| |||||||||
Sbjct: 148114 cgtggaggtcactctggaggtcagggcc 148087



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>gb|AC151413.2| Mus musculus BAC clone RP23-103N6 from 19, complete sequence
          Length = 230420

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 14   cctgagatcccctccagcca 33
            ||||||||||||||||||||
Sbjct: 7359 cctgagatcccctccagcca 7340


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,433,402
Number of Sequences: 3902068
Number of extensions: 2433402
Number of successful extensions: 39391
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39325
Number of HSP's gapped (non-prelim): 66
length of query: 336
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 314
effective length of database: 17,147,199,772
effective search space: 5384220728408
effective search space used: 5384220728408
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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