ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl09h06 |
|---|---|
| Clone Library Name | barley_pub |
>RPA1_TRYBB (P16355) DNA-directed RNA polymerase I largest subunit (EC 2.7.7.6)| Length = 1744 Score = 30.8 bits (68), Expect = 0.84 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = -2 Query: 282 IHEEDPEKDGIGGGDTRNPQRLAGSRRTGAREQC*RISADPEVAD 148 +H + + GI G DT PQR GS +G + ++D E AD Sbjct: 1411 LHSDGTDTRGIAGSDTGGPQRRRGSVESGRGDD----ASDSEAAD 1451
>ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 30.0 bits (66), Expect = 1.4 Identities = 31/89 (34%), Positives = 38/89 (42%), Gaps = 7/89 (7%) Frame = +1 Query: 10 PLSPAPHPRLSLSA---LA*GSCRGENPRDRSMRAGTAGGELLRRADPVV--GHLRIC-* 171 P SPAP P L+A + S N R + + GG+ ADPV C Sbjct: 102 PASPAPSPAPGLAAMLKMVHSSVAPGNGRRATGSSSPGGGD---AADPVALDSDTETCPG 158 Query: 172 NPSALLPCSCSPTPGQPL-RIASISPSDS 255 +P P S SP G P R+ SIS S S Sbjct: 159 SPQPEFPSSASPGGGSPAPRVRSISISSS 187
>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 30.0 bits (66), Expect = 1.4 Identities = 31/89 (34%), Positives = 38/89 (42%), Gaps = 7/89 (7%) Frame = +1 Query: 10 PLSPAPHPRLSLSA---LA*GSCRGENPRDRSMRAGTAGGELLRRADPVV--GHLRIC-* 171 P SPAP P L+A + S N R + + GG+ ADPV C Sbjct: 102 PASPAPSPAPGLAAMLKMVHSSVAPGNGRRATGSSSPGGGD---AADPVALDSDTETCPG 158 Query: 172 NPSALLPCSCSPTPGQPL-RIASISPSDS 255 +P P S SP G P R+ SIS S S Sbjct: 159 SPQPEFPSSASPGGGSPAPRVRSISISSS 187
>ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 30.0 bits (66), Expect = 1.4 Identities = 31/89 (34%), Positives = 38/89 (42%), Gaps = 7/89 (7%) Frame = +1 Query: 10 PLSPAPHPRLSLSA---LA*GSCRGENPRDRSMRAGTAGGELLRRADPVV--GHLRIC-* 171 P SPAP P L+A + S N R + + GG+ ADPV C Sbjct: 102 PASPAPSPAPGLAAMLKMVHSSVAPGNGRRATGSSSPGGGD---AADPVALDSDTETCPG 158 Query: 172 NPSALLPCSCSPTPGQPL-RIASISPSDS 255 +P P S SP G P R+ SIS S S Sbjct: 159 SPQPEFPSSASPGGGSPAPRVRSISISSS 187
>NEB1_HUMAN (Q9ULJ8) Neurabin-1 (Neurabin-I) (Neural tissue-specific F-actin| binding protein I) (Protein phosphatase 1 regulatory subunit 9A) Length = 1098 Score = 29.6 bits (65), Expect = 1.9 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +3 Query: 72 RRKPERSIHEGGDRRRGAAPACRSGGRPPQD 164 R+ ERS+HE G R + ++GG PQD Sbjct: 143 RKMFERSVHESGQNNRYSPKKEKAGGSEPQD 173
>PEX6_PENCH (Q9HG03) Peroxisomal biogenesis factor 6 (Peroxin-6)| Length = 1459 Score = 29.6 bits (65), Expect = 1.9 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = +3 Query: 66 LPRRKPERSIHEGGDRRRGAAPACRSGGRPPQDLLKSFSIAPLLLFSDSRP 218 LP KP +I+ G+RR + RPP L S + PLLL + P Sbjct: 504 LPSSKPRYAINHSGERRPSISQ------RPPTRLTPSVFVPPLLLGNIENP 548
>DNPEP_HUMAN (Q9ULA0) Aspartyl aminopeptidase (EC 3.4.11.21)| Length = 475 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = -3 Query: 368 GLQSTIQARSLSTEHFVRKFSTRFQHAT*FTRRIPK 261 G +S A+SL TE +R+ S QH T F IPK Sbjct: 304 GSESAQGAQSLLTELVLRRISASCQHPTAFEEAIPK 339
>M3K1_MOUSE (P53349) Mitogen-activated protein kinase kinase kinase 1 (EC| 2.7.11.25) (MAPK/ERK kinase kinase 1) (MEK kinase 1) (MEKK 1) Length = 1493 Score = 29.3 bits (64), Expect = 2.4 Identities = 21/61 (34%), Positives = 25/61 (40%) Frame = -2 Query: 195 AREQC*RISADPEVADHRICTPEQLPAGGPRPHGSISRVFSSARTLGES*EG*ARVGGG* 16 A C S PE AD PA GP P G+ SR S + L + + AR G Sbjct: 87 ASPPCPSTSPSPEPADAAAGASRFQPAAGPPPPGAASRCGSHSAELAAARDSGARSPAGA 146 Query: 15 E 13 E Sbjct: 147 E 147
>OTRA_STRRM (Q55002) Oxytetracycline resistance protein| Length = 663 Score = 28.5 bits (62), Expect = 4.2 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Frame = -3 Query: 281 FTRRIPKRTESEGEILAIRRGW-PGVGEQEQGSNAEG 174 F +R+P T+ EG LA RG+ P VG+ EG Sbjct: 610 FNQRVPGLTQGEGVFLAEHRGYRPAVGQPPVRPRPEG 646
>M3K1_RAT (Q62925) Mitogen-activated protein kinase kinase kinase 1 (EC| 2.7.11.25) (MAPK/ERK kinase kinase 1) (MEK kinase 1) (MEKK 1) Length = 1493 Score = 28.5 bits (62), Expect = 4.2 Identities = 21/61 (34%), Positives = 25/61 (40%) Frame = -2 Query: 195 AREQC*RISADPEVADHRICTPEQLPAGGPRPHGSISRVFSSARTLGES*EG*ARVGGG* 16 A C S PE AD PA GP P G+ SR S + L + + AR G Sbjct: 82 ASPPCPSTSPSPEPADAAAGASGFQPAAGPPPPGAASRCGSHSAELAAARDSGARSPAGA 141 Query: 15 E 13 E Sbjct: 142 E 142
>AGUA_ERWCT (Q6CZ80) Putative agmatine deiminase (EC 3.5.3.12) (Agmatine| iminohydrolase) Length = 368 Score = 28.5 bits (62), Expect = 4.2 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = -2 Query: 321 REKILHQIPACDLIHEEDPEKDGIGGGDTRNPQRLAGSRRTGA 193 RE + ++PA +H E G+ GD +RLAGSR G+ Sbjct: 265 RELKIWKLPAPGPLHATKEEAQGVDSGDA--VERLAGSRLAGS 305
>ATBF1_HUMAN (Q15911) Alpha-fetoprotein enhancer-binding protein (AT motif-binding| factor) (AT-binding transcription factor 1) Length = 3703 Score = 28.1 bits (61), Expect = 5.5 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Frame = +2 Query: 2 HSSHSHPPPTLAYPSQLSPRVLAEEKTREIDP*GRG-----PPAGSCSGVQIRWSATSG 163 HS+ S PPP+ A PS SP + + + PP S S V +TSG Sbjct: 3592 HSNDSPPPPSAAAPSSASPHASRKSWPQVVSRASAAKPPSFPPLSSSSTVTSSSCSTSG 3650
>KCNH2_HUMAN (Q12809) Potassium voltage-gated channel subfamily H member 2| (Voltage-gated potassium channel subunit Kv11.1) (Ether-a-go-go related gene potassium channel 1) (H-ERG) (Erg1) (Ether-a-go-go related protein 1) (Eag-related protein 1) (eag homo Length = 1159 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = -3 Query: 311 FSTRFQHAT*FTRRIPKRTESEGEILAIRRGWPGVGEQEQG 189 FS + + F RR K TE GE+ A+ G G G +G Sbjct: 881 FSRQRKRKLSFRRRTDKDTEQPGEVSALGPGRAGAGPSSRG 921
>PRPP_HUMAN (P81489) Salivary proline-rich protein II-1 (Fragment)| Length = 174 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = +3 Query: 69 PRRKPERSIHEGGDRRRGAAP-ACRSGGRPPQDLLKS 176 P KPER +GGD+ +G P + G PPQ+ KS Sbjct: 134 PPGKPERPPPQGGDQSQGPPPHPGKPEGPPPQEGNKS 170
>PTN23_MOUSE (Q6PB44) Tyrosine-protein phosphatase non-receptor type 23 (EC| 3.1.3.48) Length = 1692 Score = 28.1 bits (61), Expect = 5.5 Identities = 17/36 (47%), Positives = 18/36 (50%) Frame = +2 Query: 17 HPPPTLAYPSQLSPRVLAEEKTREIDP*GRGPPAGS 124 HP PTLAY SPR L + T RGPP S Sbjct: 1100 HPHPTLAYGPAPSPRPLGPQATPVSI---RGPPPAS 1132
>IF4G3_MOUSE (Q80XI3) Eukaryotic translation initiation factor 4 gamma 3| (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II) (eIF4GII) Length = 1579 Score = 28.1 bits (61), Expect = 5.5 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 1/81 (1%) Frame = +1 Query: 10 PLSPAPHP-RLSLSALA*GSCRGENPRDRSMRAGTAGGELLRRADPVVGHLRIC*NPSAL 186 P S APH +L S + G + S + T G L + P+ L I +P Sbjct: 336 PCSVAPHDSQLISSTILINEMNGVGEK-LSAKENTVG-MLRQEVLPLTLELEILEHPQEE 393 Query: 187 LPCSCSPTPGQPLRIASISPS 249 L C+PTP P + + SP+ Sbjct: 394 LKVECTPTPIAPSMLPAFSPA 414
>FOXGB_CHICK (Q90964) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) (CBF-1) (Proto-oncogene C-QIN) (N-62-5) (CEQ 3-1) Length = 451 Score = 27.7 bits (60), Expect = 7.1 Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Frame = +2 Query: 2 HSSHSHPPPTLAYPSQLSPRVLAEEKTREIDP*GRGPP-AGSCSGVQIRWSATSGSA 169 H H HPPP P Q AEE+ E P PP AG+ + A G A Sbjct: 49 HHHHHHPPP----PQQPQRAAAAEEEDEEKAPLLLPPPAAGALEAAKAEALAGKGEA 101
>OPRM_MOUSE (P42866) Mu-type opioid receptor (MOR-1)| Length = 398 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = +1 Query: 151 GHLRIC*NPSALLPCSCSPTPGQPLRIASISPSDS 255 G++ C +P L P SCSP PG L ++ + + S Sbjct: 8 GNISDCSDP--LAPASCSPAPGSWLNLSHVDGNQS 40
>QIN_AVIS3 (P56260) Transforming protein Qin (Oncogene Qin)| Length = 387 Score = 27.7 bits (60), Expect = 7.1 Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Frame = +2 Query: 2 HSSHSHPPPTLAYPSQLSPRVLAEEKTREIDP*GRGPP-AGSCSGVQIRWSATSGSA 169 H H HPPP P Q AEE+ E P PP AG+ + A G A Sbjct: 49 HHHHHHPPP----PQQPQRAAAAEEEDEEKAPLLLPPPAAGALEAAKAEALAGKGEA 101
>YCY9_YEAST (P25657) Hypothetical 18.0 kDa protein in GIT1-PAU3 intergenic| region Length = 155 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = -2 Query: 330 RTFREKILHQIPACDLIHEEDPE 262 RTF++ ILH+IP CD E D E Sbjct: 50 RTFKDMILHEIP-CDSCTESDYE 71
>RAE1L_ARATH (Q38942) Rae1-like protein At1g80670| Length = 349 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/34 (32%), Positives = 16/34 (47%) Frame = +1 Query: 202 SPTPGQPLRIASISPSDSVLFGILLVNQVACWNL 303 +P+P + S SP +L NQV CW + Sbjct: 21 TPSPADSISSLSFSPRADILVATSWDNQVRCWEI 54
>GBX1_MOUSE (P82976) Homeobox protein GBX-1 (Gastrulation and brain-specific| homeobox protein 1) Length = 418 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/51 (31%), Positives = 23/51 (45%) Frame = +2 Query: 20 PPPTLAYPSQLSPRVLAEEKTREIDP*GRGPPAGSCSGVQIRWSATSGSAE 172 PPP + S+ P + AE K D PPAG +G + + G +E Sbjct: 220 PPPPPPHFSETFPSLPAEGKVYSSDEEKLEPPAGDPAGSEQEEEGSGGDSE 270
>PRP1_HUMAN (P04280) Basic salivary proline-rich protein 1 precursor (Salivary| proline-rich protein) [Contains: Basic peptide IB-6; Peptide P-H] Length = 392 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = +3 Query: 69 PRRKPERSIHEGGDRRRGAAPACRSGGRPPQ 161 P KP+ +GG+R +G P + G PPQ Sbjct: 236 PPGKPQGPPQQGGNRPQGPPPPGKPQGPPPQ 266
>KCNH2_RABIT (Q8WNY2) Potassium voltage-gated channel subfamily H member 2| (Voltage-gated potassium channel subunit Kv11.1) (Ether-a-go-go-related gene potassium channel 1) (ERG1) (RERG) (ra-erg) (Ether-a-go-go-related protein 1) (Eag-related protein 1) Length = 1161 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -3 Query: 281 FTRRIPKRTESEGEILAIRRGWPGVGEQEQG 189 F RR K TE GE+ A+ G G G +G Sbjct: 893 FRRRTDKDTEQPGEVSALGPGRAGAGPSSRG 923
>CUT2_CAEEL (P34682) Cuticlin-2 precursor| Length = 231 Score = 27.3 bits (59), Expect = 9.3 Identities = 18/42 (42%), Positives = 21/42 (50%) Frame = +1 Query: 31 PRLSLSALA*GSCRGENPRDRSMRAGTAGGELLRRADPVVGH 156 PRLSL +L G C G P + A AGG A PV G+ Sbjct: 56 PRLSLPSLG-GGCGGPAPCAAAPIAAPAGGYATAPAAPVGGY 96
>SYTL2_HUMAN (Q9HCH5) Synaptotagmin-like protein 2 (Exophilin-4)| Length = 895 Score = 27.3 bits (59), Expect = 9.3 Identities = 15/47 (31%), Positives = 24/47 (51%) Frame = -2 Query: 360 INNSGKVAFNRTFREKILHQIPACDLIHEEDPEKDGIGGGDTRNPQR 220 IN + T E +L + PA +L H +PE + GG +R+ Q+ Sbjct: 425 INEPKDKSSELTRLESVLPRSPADELSHCVEPEPSQVPGGSSRDRQQ 471
>FOXGB_RAT (Q00939) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) Length = 480 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/39 (33%), Positives = 15/39 (38%) Frame = +2 Query: 2 HSSHSHPPPTLAYPSQLSPRVLAEEKTREIDP*GRGPPA 118 H H HPPP P P+ + P RG PA Sbjct: 51 HHHHHHPPPPAPQPPPPPPQQQQQPPPAPQPPQARGAPA 89
>SYL_AERPE (Q9YD97) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 959 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +3 Query: 138 RSGGRPPQDLLKSFSIAPLLLFSDSRPTSAD 230 RSGG P +DLL+ F LL + P +A+ Sbjct: 757 RSGGEPREDLLRRFIEVQTLLIAPFAPHTAE 787
>TF3C1_MOUSE (Q8K284) General transcription factor 3C polypeptide 1 (Transcription| factor IIIC-alpha subunit) (TF3C-alpha) (TFIIIC 220 kDa subunit) (TFIIIC220) (TFIIIC box B-binding subunit) Length = 2101 Score = 27.3 bits (59), Expect = 9.3 Identities = 19/56 (33%), Positives = 23/56 (41%) Frame = -2 Query: 222 RLAGSRRTGAREQC*RISADPEVADHRICTPEQLPAGGPRPHGSISRVFSSARTLG 55 R+A S R GA EQ A ++ PE AGGPR + S LG Sbjct: 1886 RVAASPRPGAEEQA------EAQAPAQLAAPEDADAGGPRQENQENVGVSGLEQLG 1935
>SCAR3_ARATH (Q9LP46) Protein SCAR3 (AtSCAR3) (Protein WAVE2)| Length = 1020 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = +2 Query: 23 PPTLAYPSQLSPRVLAEEKT 82 PP LA PS LSP EE+T Sbjct: 586 PPVLAMPSSLSPDCKTEERT 605
>PAIP1_HUMAN (Q9H074) Polyadenylate-binding protein-interacting protein 1| (Poly(A)-binding protein-interacting protein 1) (PABP-interacting protein 1) (PAIP-1) Length = 479 Score = 27.3 bits (59), Expect = 9.3 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Frame = +3 Query: 99 EGGDRRRGAAPACRSGGRPPQDLLKSF-SIAPLLLFSDSRPTSADCE 236 EGG GA PA R+ +PPQ F PL + P A CE Sbjct: 27 EGGGFPNGAGPAERARHQPPQPKAPGFLQPPPLRQPRTTPPPGAQCE 73 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,222,605 Number of Sequences: 219361 Number of extensions: 1197792 Number of successful extensions: 3898 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 3690 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3894 length of database: 80,573,946 effective HSP length: 98 effective length of database: 59,076,568 effective search space used: 1417837632 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
