ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl09h04 |
|---|---|
| Clone Library Name | barley_pub |
>RB6I2_HUMAN (Q8IUD2) RAB6-interacting protein 2 (ERC protein 1)| Length = 1116 Score = 30.0 bits (66), Expect = 1.5 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = +1 Query: 121 RPPRLPRSPLVARSRRSKAGWRGRVCVGGG 210 R PRLPRSP + R + G VGGG Sbjct: 20 RSPRLPRSPRLGHRRTNSTGGSSGSSVGGG 49
>GRISA_PODAN (Q92258) GRISEA protein (MAC1 homolog)| Length = 597 Score = 30.0 bits (66), Expect = 1.5 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = +1 Query: 124 PPRLPRSPLVARSRRSK--AGWRGRVCVGGGDKSPRCDLP 237 PP P +P++ S SK G G C GGG K+P+ P Sbjct: 250 PPPPPSNPVLEPSAMSKPKGGSGGGGCCGGGKKAPQIQAP 289
>RB6I2_RAT (Q811U3) RAB6-interacting protein 2 (ERC protein 1) (ERC1)| (CAZ-associated structural protein 2) (CAST2) Length = 948 Score = 29.6 bits (65), Expect = 1.9 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = +1 Query: 121 RPPRLPRSPLVARSRRSKAGWRGRVCVGGG 210 R PRLPRSP + R + G VGGG Sbjct: 20 RSPRLPRSPRLGHRRTNSTGGSSGNSVGGG 49
>RB6I2_MOUSE (Q99MI1) RAB6-interacting protein 2 (ERC protein 1) (ERC1)| (CAZ-associated structural protein 2) (CAST2) Length = 1120 Score = 29.6 bits (65), Expect = 1.9 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = +1 Query: 121 RPPRLPRSPLVARSRRSKAGWRGRVCVGGG 210 R PRLPRSP + R + G VGGG Sbjct: 20 RSPRLPRSPRLGHRRTNSTGGSSGNSVGGG 49
>ICP0_BHV1K (P29836) Trans-acting transcriptional protein ICP0 (P135 protein)| (IER 2.9/ER2.6) Length = 676 Score = 28.9 bits (63), Expect = 3.3 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 3/33 (9%) Frame = -2 Query: 309 RGAHGSARAPNHRKKK---TDGRTTPARQIAPR 220 RGA G+ARA +++ T GR TPA Q APR Sbjct: 335 RGASGAARARRPAERQYVSTRGRQTPAVQPAPR 367
>ICP0_BHV1J (P29128) Trans-acting transcriptional protein ICP0 (P135 protein)| (IER 2.9/ER2.6) Length = 676 Score = 28.9 bits (63), Expect = 3.3 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 3/33 (9%) Frame = -2 Query: 309 RGAHGSARAPNHRKKK---TDGRTTPARQIAPR 220 RGA G+ARA +++ T GR TPA Q APR Sbjct: 335 RGASGAARARRPAERQYVSTRGRQTPAVQPAPR 367
>ZO3_MOUSE (Q9QXY1) Tight junction protein ZO-3 (Zonula occludens 3 protein)| (Zona occludens 3 protein) (Tight junction protein 3) Length = 905 Score = 28.9 bits (63), Expect = 3.3 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 8/51 (15%) Frame = +1 Query: 157 RSRRSKAGWRGRV------CVGGGDKSPRCDLPGGSR--PSVRLLLAVIRS 285 RSRRS+AG RGRV GGG ++ DL G + P +L+ ++S Sbjct: 137 RSRRSRAGRRGRVGSHGRRSSGGGSEANGLDLVSGYKRLPKQDVLMRPLKS 187
>CBX4_HUMAN (O00257) Chromobox protein homolog 4 (Polycomb 2 homolog) (Pc2)| (hPc2) Length = 558 Score = 28.1 bits (61), Expect = 5.6 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -2 Query: 303 AHGSARAPNHRKKKTDGRTTPA 238 A G AR+P+H+K+ D R PA Sbjct: 283 AEGEARSPSHKKRAADERHPPA 304
>GAGD3_HUMAN (Q96GT9) G antigen family D 3 protein (XAGE-2 protein)| Length = 111 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/48 (29%), Positives = 22/48 (45%) Frame = +1 Query: 37 RPNPNPNLFPSLVFV*LVAALSERAKEKRPPRLPRSPLVARSRRSKAG 180 RP P +L P + ++ E KE++PP R+P + R G Sbjct: 10 RPRPRRSLQPPELIGAMLEPTDEEPKEEKPPTKSRNPTPDQKREDDQG 57
>Y4219_PSEAE (P42514) Hypothetical protein PA4219| Length = 394 Score = 27.7 bits (60), Expect = 7.3 Identities = 14/36 (38%), Positives = 17/36 (47%) Frame = -2 Query: 321 ASMRRGAHGSARAPNHRKKKTDGRTTPARQIAPRGF 214 A +RRG +A HR + DG R A RGF Sbjct: 166 AGIRRGLPSTANFERHRYRLADGTLLGERSSAQRGF 201
>TGM1_MOUSE (Q9JLF6) Protein-glutamine gamma-glutamyltransferase K (EC| 2.3.2.13) (Transglutaminase K) (TGase K) (TGK) (TG(K)) (Transglutaminase-1) (Epidermal TGase) Length = 815 Score = 27.7 bits (60), Expect = 7.3 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -1 Query: 307 RRPWQRPRSESPQEEDGRTDDSRPANRTAG 218 R PWQ P + SP+ E D R +R G Sbjct: 13 RSPWQPPTTPSPEPEPEPEPDRRSRSRRGG 42
>SYD_THETH (P36419) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 580 Score = 27.7 bits (60), Expect = 7.3 Identities = 23/55 (41%), Positives = 26/55 (47%) Frame = +1 Query: 25 LQSLRPNPNPNLFPSLVFV*LVAALSERAKEKRPPRLPRSPLVARSRRSKAGWRG 189 L LRP PNP L V V L +AL A+ K PP P+ AGWRG Sbjct: 74 LVRLRPEPNPRLATGRVEVEL-SALEVLAEAKTPP----FPV-------DAGWRG 116
>SYD_THET8 (Q5SKD2) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 580 Score = 27.7 bits (60), Expect = 7.3 Identities = 23/55 (41%), Positives = 26/55 (47%) Frame = +1 Query: 25 LQSLRPNPNPNLFPSLVFV*LVAALSERAKEKRPPRLPRSPLVARSRRSKAGWRG 189 L LRP PNP L V V L +AL A+ K PP P+ AGWRG Sbjct: 74 LVRLRPEPNPRLATGRVEVEL-SALEVLAEAKTPP----FPV-------DAGWRG 116
>SYD_THET2 (Q72KH6) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 580 Score = 27.7 bits (60), Expect = 7.3 Identities = 23/55 (41%), Positives = 26/55 (47%) Frame = +1 Query: 25 LQSLRPNPNPNLFPSLVFV*LVAALSERAKEKRPPRLPRSPLVARSRRSKAGWRG 189 L LRP PNP L V V L +AL A+ K PP P+ AGWRG Sbjct: 74 LVRLRPEPNPRLATGRVEVEL-SALEVLAEAKTPP----FPV-------DAGWRG 116
>KLF4_MOUSE (Q60793) Krueppel-like factor 4 (Gut-enriched krueppel-like factor)| (Epithelial zinc-finger protein EZF) Length = 474 Score = 27.7 bits (60), Expect = 7.3 Identities = 20/57 (35%), Positives = 22/57 (38%), Gaps = 2/57 (3%) Frame = +1 Query: 7 HSGTPALQSLRPNPNPNLFPSLVFV*LVAALSERAKEKRPPR--LPRSPLVARSRRS 171 H G P P+P PN P L S +E PP LP P R RRS Sbjct: 326 HPGLPLPPGFHPHPGPNYPPFLPDQMQSQVPSLHYQELMPPGSCLPEEPKPKRGRRS 382
>RL15_THETH (P74910) 50S ribosomal protein L15| Length = 150 Score = 27.3 bits (59), Expect = 9.5 Identities = 23/80 (28%), Positives = 29/80 (36%) Frame = +1 Query: 25 LQSLRPNPNPNLFPSLVFV*LVAALSERAKEKRPPRLPRSPLVARSRRSKAGWRGRVCVG 204 L LRPNP N KR R+ R P + + G +G+ Sbjct: 3 LSDLRPNPGAN--------------------KRRKRVGRGPGSGHGKTATRGHKGQKSRS 42 Query: 205 GGDKSPRCDLPGGSRPSVRL 264 GG K PR G S +RL Sbjct: 43 GGLKDPRRFEGGRSTTLMRL 62
>RL15_THET8 (Q5SHQ7) 50S ribosomal protein L15| Length = 150 Score = 27.3 bits (59), Expect = 9.5 Identities = 23/80 (28%), Positives = 29/80 (36%) Frame = +1 Query: 25 LQSLRPNPNPNLFPSLVFV*LVAALSERAKEKRPPRLPRSPLVARSRRSKAGWRGRVCVG 204 L LRPNP N KR R+ R P + + G +G+ Sbjct: 3 LSDLRPNPGAN--------------------KRRKRVGRGPGSGHGKTATRGHKGQKSRS 42 Query: 205 GGDKSPRCDLPGGSRPSVRL 264 GG K PR G S +RL Sbjct: 43 GGLKDPRRFEGGRSTTLMRL 62
>RL15_THET2 (Q72I23) 50S ribosomal protein L15| Length = 150 Score = 27.3 bits (59), Expect = 9.5 Identities = 23/80 (28%), Positives = 29/80 (36%) Frame = +1 Query: 25 LQSLRPNPNPNLFPSLVFV*LVAALSERAKEKRPPRLPRSPLVARSRRSKAGWRGRVCVG 204 L LRPNP N KR R+ R P + + G +G+ Sbjct: 3 LSDLRPNPGAN--------------------KRRKRVGRGPGSGHGKTATRGHKGQKSRS 42 Query: 205 GGDKSPRCDLPGGSRPSVRL 264 GG K PR G S +RL Sbjct: 43 GGLKDPRRFEGGRSTTLMRL 62 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,043,024 Number of Sequences: 219361 Number of extensions: 745847 Number of successful extensions: 2597 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2485 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2597 length of database: 80,573,946 effective HSP length: 93 effective length of database: 60,173,373 effective search space used: 1444160952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
