Clone Information

BLAST Search Result

Clone Name	bastl09h03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AF064562.1\|AF064562 Hordeum vulgare cultivar Bomi starch bran...	575	e-161
2	emb\|Y11282.1\|TASBA2 T.aestivum mRNA for starch branching enzyme II	329	4e-87
3	gb\|AF286319.1\| Triticum aestivum starch branching enzyme 2 (Sbe2...	329	4e-87
4	gb\|BT008928.1\| Triticum aestivum clone wde1f.pk002.g8:fis, full ...	278	1e-71
5	gb\|U66376.1\|TAU66376 Triticum aestivum 1,4-alpha-D-glucan 6-alph...	238	1e-59
6	gb\|AF338431.1\|AF338431 Aegilops tauschii starch branching enzyme...	218	9e-54
7	gb\|AF338432.1\|AF338432 Triticum aestivum starch branching enzyme...	141	2e-30
8	gb\|AY357072.1\| Triticum aestivum cultivar Yumai-18 starch branch...	139	7e-30
9	dbj\|AB023498.1\| Oryza sativa mRNA for starch branching enzyme rb...	66	8e-08
10	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	60	5e-06
11	gb\|AY109521.1\| Zea mays CL1245_1 mRNA sequence	58	2e-05
12	gb\|U65948.1\|ZMU65948 Zea mays starch branching enzyme IIa (Sbe2a...	58	2e-05
13	gb\|AF228486.1\|AF228486 Zea mays starch branching enzyme 2a gene,...	54	3e-04
14	ref\|XM_477110.1\| Oryza sativa (japonica cultivar-group), mRNA	44	0.31
15	gb\|AF215629.2\| Crypteronia paniculata chloroplast rpl16 gene, in...	44	0.31
16	emb\|AL939129.1\|SCO939129 Streptomyces coelicolor A3(2) complete ...	44	0.31
17	emb\|AJ605109.1\| Dactylocladus stenostachys chloroplast rpl16 gen...	44	0.31
18	emb\|AJ605108.1\| Crypteronia griffithii chloroplast rpl16 gene fo...	44	0.31
19	emb\|AJ605107.1\| Axinandra zeylanica chloroplast rpl16 gene for r...	44	0.31
20	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.31
21	gb\|AY151597.1\| Crypteronia paniculata rpl16 gene, intron; chloro...	44	0.31
22	dbj\|AP005098.4\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.31
23	dbj\|AP003748.4\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.31
24	emb\|Y19466.1\|PAN19466 Phaseolus angustissimus DNA for internal t...	44	0.31
25	emb\|AM086752.1\| Senna holwayana var. holwayana chloroplast rpL16...	44	0.31
26	ref\|XM_849137.1\| PREDICTED: Canis familiaris similar to Adapter-...	42	1.2
27	gb\|CP000249.1\| Frankia sp. CcI3, complete genome	42	1.2
28	gb\|AF086815.2\|AF086815 Acidovorax avenae subsp. citrulli s-triaz...	42	1.2
29	gb\|AF342826.1\|AF342826 Enterobacter cloacae plasmid pPDL12 s-tri...	42	1.2
30	ref\|NM_111873.2\| Arabidopsis thaliana SEC8 AT3G10380 (SEC8) mRNA...	40	4.8
31	gb\|U49941.1\| Caenorhabditis elegans cosmid K10B3, complete sequence	40	4.8
32	gb\|BT011118.1\| Drosophila melanogaster LD13710 full insert cDNA	40	4.8
33	gb\|AC009400.4\|ATAC009400 Arabidopsis thaliana chromosome III BAC...	40	4.8
34	gb\|AY059763.1\| Arabidopsis thaliana unknown protein (At3g10380) ...	40	4.8
35	emb\|AJ010348.1\|FRU010348 Fugu rubripes UBE1-like gene, PRGFR2 ge...	40	4.8
36	ref\|NM_165320.1\| Drosophila melanogaster CG10722-RB, transcript ...	40	4.8
37	ref\|NM_136181.1\| Drosophila melanogaster CG10722-RA, transcript ...	40	4.8
38	emb\|AJ616913.1\| Sordaria macrospora pro40 gene for putative sign...	40	4.8
39	gb\|AC093044.1\| Drosophila melanogaster, chromosome 2L, region 38...	40	4.8
40	dbj\|AB062136.1\| Streptomyces halstedii PDK1 gene for phospholipa...	40	4.8
41	dbj\|AP006618.1\| Nocardia farcinica IFM 10152 DNA, complete genome	40	4.8
42	gb\|AC141209.11\| Mus musculus chromosome 3, clone RP23-199M5, com...	40	4.8
43	dbj\|AK118541.1\| Arabidopsis thaliana At3g10380 mRNA for unknown ...	40	4.8
44	gb\|AF130408.1\|AF130408 Streptomyces viridosporus strain T7A cell...	40	4.8
45	gb\|AE003665.4\| Drosophila melanogaster chromosome 2L, section 74...	40	4.8
46	gb\|AC078897.20\| Mus musculus strain C57BL/6J chromosome 3 clone ...	40	4.8
47	gb\|AY553215.2\| Nicotiana tabacum hexokinase 2 (Hxk2) mRNA, compl...	40	4.8
48	gb\|AC004364.1\|AC004364 Drosophila melanogaster DNA sequence (P1 ...	40	4.8

>gb|AF064562.1|AF064562 Hordeum vulgare cultivar Bomi starch branching enzyme IIa (sbeIIa)
           gene, nuclear gene encoding plastid protein, partial cds
          Length = 1852

 Score =  575 bits (290), Expect = e-161
 Identities = 309/315 (98%), Gaps = 1/315 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagtacccgccagcttccacccccgccgcacacgttgctcccccttctcatcgcttctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 acagtacccgccagcttccacccccgccgcacacgttgctcccccttctcatcgcttctc 236

                                                                       
Query: 61  aattaatatctcccatcactcccctcactcggtcggcctcgggttccgcgctgctgcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 aattaatatctcccatcactcccctcactcggtcggcctcgggttccgcgctgctgcatt 296

                                                                       
Query: 121 tcggccggcgtgttgagtgagatctgggcgaccgactcgctcgctcgctgcgcgggagat 180
           |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||  |
Sbjct: 297 tcggccggcgtgttgagtgagatctgggcgaccgactcgctcgc-ctctgcgcgggadnt 355

                                                                       
Query: 181 ggcgacgttcgcggtgtccggcgcgacccttggtgtggcgcgggccgccggcggagcgct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 356 ggcgacgttcgcggtgtccggcgcgacccttggtgtggcgcgggccgccggcggaaggct 415

                                                                       
Query: 241 gccgcgatccggctcggagcggaggggcgggctggacttgccgtcgctgctcctcaggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gccgcgatccggctcggagcggaggggcgggctggacttgccgtcgctgctcctcaggaa 475

                          
Query: 301 gaaggactcctctcg 315
           |||||||||||||||
Sbjct: 476 gaaggactcctctcg 490



 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 44/45 (97%), Gaps = 1/45 (2%)
 Strand = Plus / Plus

                                                        
Query: 315 gcgccgtcctgagctgcgcggccgctccagggaaggtcctggtgc 359
           |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 818 gcgccgtcctga-ctgcgcggccgctccagggaaggtcctggtgc 861

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>emb|Y11282.1|TASBA2 T.aestivum mRNA for starch branching enzyme II
          Length = 2970

 Score =  329 bits (166), Expect = 4e-87
 Identities = 250/277 (90%), Gaps = 17/277 (6%)
 Strand = Plus / Plus

                                                                       
Query: 98  ctcgggttccgcgctgctgcatttcggccggcgtgttgagtgagatctgggc----gacc 153
           |||||||||||||||||   ||||||||||||| ||||||||||||||||||    ||||
Sbjct: 70  ctcgggttccgcgctgc---atttcggccggcgggttgagtgagatctgggccactgacc 126

                                                                       
Query: 154 gactcgctcgctcgctgcgcgggagatggcgacgttcgcggtgtccggcgcgacccttgg 213
           ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 127 gactcactcgctcgctgcgcggg-gatggcgacgttcgcggtgtccggcgcgaccctcgg 185

                                                                       
Query: 214 tgtggcgcgggccgccgg---------cggagcgctgccgcgatccggctcggagcggag 264
           |||||||||| |||||||         ||||  |||||||||||||||||||||||||||
Sbjct: 186 tgtggcgcggcccgccggcgccggcggcggactgctgccgcgatccggctcggagcggag 245

                                                                       
Query: 265 gggcgggctggacttgccgtcgctgctcctcaggaagaaggactcctctcgcgccgtcct 324
           ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gggcggggtggacctgccgtcgctgctcctcaggaagaaggactcctctcgcgccgtcct 305

                                                
Query: 325 gagctgcgcggccgctccagggaaggtcctggtgcct 361
           |||| |||||||| |||||||||||||||||||||||
Sbjct: 306 gagccgcgcggcctctccagggaaggtcctggtgcct 342



 Score =  129 bits (65), Expect = 7e-27
 Identities = 65/65 (100%)
 Strand = Plus / Plus

                                                                      
Query: 9  cgccagcttccacccccgccgcacacgttgctcccccttctcatcgcttctcaattaata 68
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  cgccagcttccacccccgccgcacacgttgctcccccttctcatcgcttctcaattaata 60

               
Query: 69 tctcc 73
          |||||
Sbjct: 61 tctcc 65

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>gb|AF286319.1| Triticum aestivum starch branching enzyme 2 (Sbe2) mRNA, complete
           cds
          Length = 2970

 Score =  329 bits (166), Expect = 4e-87
 Identities = 250/277 (90%), Gaps = 17/277 (6%)
 Strand = Plus / Plus

                                                                       
Query: 98  ctcgggttccgcgctgctgcatttcggccggcgtgttgagtgagatctgggc----gacc 153
           |||||||||||||||||   ||||||||||||| ||||||||||||||||||    ||||
Sbjct: 68  ctcgggttccgcgctgc---atttcggccggcgggttgagtgagatctgggccactgacc 124

                                                                       
Query: 154 gactcgctcgctcgctgcgcgggagatggcgacgttcgcggtgtccggcgcgacccttgg 213
           ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 125 gactcactcgctcgctgcgcggg-gatggcgacgttcgcggtgtccggcgcgaccctcgg 183

                                                                       
Query: 214 tgtggcgcgggccgccgg---------cggagcgctgccgcgatccggctcggagcggag 264
           |||||||||| |||||||         ||||  |||||||||||||||||||||||||||
Sbjct: 184 tgtggcgcggcccgccggcgccggcggcggactgctgccgcgatccggctcggagcggag 243

                                                                       
Query: 265 gggcgggctggacttgccgtcgctgctcctcaggaagaaggactcctctcgcgccgtcct 324
           ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gggcggggtggacctgccgtcgctgctcctcaggaagaaggactcctctcgcgccgtcct 303

                                                
Query: 325 gagctgcgcggccgctccagggaaggtcctggtgcct 361
           |||| |||||||| |||||||||||||||||||||||
Sbjct: 304 gagccgcgcggcctctccagggaaggtcctggtgcct 340



 Score =  125 bits (63), Expect = 1e-25
 Identities = 63/63 (100%)
 Strand = Plus / Plus

                                                                      
Query: 11 ccagcttccacccccgccgcacacgttgctcccccttctcatcgcttctcaattaatatc 70
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ccagcttccacccccgccgcacacgttgctcccccttctcatcgcttctcaattaatatc 60

             
Query: 71 tcc 73
          |||
Sbjct: 61 tcc 63

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>gb|BT008928.1| Triticum aestivum clone wde1f.pk002.g8:fis, full insert mRNA
           sequence
          Length = 2549

 Score =  278 bits (140), Expect = 1e-71
 Identities = 209/231 (90%), Gaps = 7/231 (3%)
 Strand = Plus / Plus

                                                                       
Query: 137 gtgagatctgggcgaccgactcgctcgctcgctgcgcgggagatggcgacgttcgcggtg 196
           ||||||||||||| || |||   ||| ||||||||||||| |||||||||||||||||||
Sbjct: 1   gtgagatctgggccactgaccgactcactcgctgcgcggg-gatggcgacgttcgcggtg 59

                                                                       
Query: 197 tccggcgcgacccttggtgtggcgcgggccgcc------ggcggagcgctgccgcgatcc 250
           |||||||||||||| |||||||||||| |||||      ||||| |  |||| |||||||
Sbjct: 60  tccggcgcgaccctcggtgtggcgcggcccgccagcgccggcggcggactgctgcgatcc 119

                                                                       
Query: 251 ggctcggagcggaggggcgggctggacttgccgtcgctgctcctcaggaagaaggactcc 310
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 120 ggctcggagcggaggggcggggtggacttgccgtcgctgctcctcaggaagaaggactcc 179

                                                              
Query: 311 tctcgcgccgtcctgagctgcgcggccgctccagggaaggtcctggtgcct 361
           |||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 180 tctcgcgccgtcctgagccgcgcggcctctccagggaaggtcctggtgcct 230

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>gb|U66376.1|TAU66376 Triticum aestivum 1,4-alpha-D-glucan
           6-alpha-D-(1,4-alpha-D-glucanotransferase mRNA, complete
           cds
          Length = 2853

 Score =  238 bits (120), Expect = 1e-59
 Identities = 202/226 (89%), Gaps = 5/226 (2%)
 Strand = Plus / Plus

                                                                       
Query: 137 gtgagatctgggcgaccgactcgctcgctcgctgcgcgggagatggcgacgtt-cgcggt 195
           |||||||||||||||| | ||  |||  || || |||||| |||||||||||| ||||||
Sbjct: 1   gtgagatctgggcgactggctgactcaatcactacgcggg-gatggcgacgtttcgcggt 59

                                                                       
Query: 196 gtccggcgcgacccttggtgtggcgcgggccgccggcggagcgctgccgcgatccggctc 255
           |||||||||||| || |||||||||||||||| || |||||   || ||||  |||||||
Sbjct: 60  gtccggcgcgactctcggtgtggcgcgggccggcgtcggag---tggcgcgggccggctc 116

                                                                       
Query: 256 ggagcggaggggcgggctggacttgccgtcgctgctcctcaggaagaaggactcctctcg 315
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 ggagcggaggggcggggcggacttgccgtcgctgctcctcaggaagaaggactcctctcg 176

                                                         
Query: 316 cgccgtcctgagctgcgcggccgctccagggaaggtcctggtgcct 361
           ||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 177 cgccgtcctgagccgcgcggcctctccagggaaggtcctggtgcct 222

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>gb|AF338431.1|AF338431 Aegilops tauschii starch branching enzyme IIa gene, complete cds
          Length = 11475

 Score =  218 bits (110), Expect = 9e-54
 Identities = 193/218 (88%), Gaps = 7/218 (3%)
 Strand = Plus / Plus

                                                                        
Query: 98   ctcgggttccgcgctgctgcatttcggccggcgtgttgagtgagatctgggcgaccgact 157
            |||||||||||||||||   ||||||||||||| ||||||||||||||||||||| | ||
Sbjct: 1127 ctcgggttccgcgctgc---atttcggccggcgggttgagtgagatctgggcgactggct 1183

                                                                        
Query: 158  cgctcgctcgctgcgcgggagatggcgacgttcgcggtgtccggcgcgacccttggtgtg 217
              |||  || || |||||| |||||||||||||||||||||||||||||| || ||||||
Sbjct: 1184 gactcaatcactacgcggg-gatggcgacgttcgcggtgtccggcgcgactctcggtgtg 1242

                                                                        
Query: 218  gcgcgggccgccggcggagcgctgccgcgatccggctcggagcggaggggcgggctggac 277
            |||||||||| || |||||   || ||||  |||||||||||||||||||||||  ||||
Sbjct: 1243 gcgcgggccggcgtcggag---tggcgcgggccggctcggagcggaggggcggggcggac 1299

                                                  
Query: 278  ttgccgtcgctgctcctcaggaagaaggactcctctcg 315
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 1300 ttgccgtcgctgctcctcaggaagaaggactcctctcg 1337



 Score =  139 bits (70), Expect = 7e-30
 Identities = 70/70 (100%)
 Strand = Plus / Plus

                                                                        
Query: 4    gtacccgccagcttccacccccgccgcacacgttgctcccccttctcatcgcttctcaat 63
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1053 gtacccgccagcttccacccccgccgcacacgttgctcccccttctcatcgcttctcaat 1112

                      
Query: 64   taatatctcc 73
            ||||||||||
Sbjct: 1113 taatatctcc 1122



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                           
Query: 315  gcgccgtcctgagctgcgcggccgctccagggaaggtcctggtgcct 361
            |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 1664 gcgccgtcctgagccgcgcggcctctccagggaaggtcctggtgcct 1710

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>gb|AF338432.1|AF338432 Triticum aestivum starch branching enzyme IIa variant mRNA,
           complete cds
          Length = 2726

 Score =  141 bits (71), Expect = 2e-30
 Identities = 114/126 (90%), Gaps = 8/126 (6%)
 Strand = Plus / Plus

                                                                       
Query: 113 gctgcatttcggccggcgtgttgagtgagatctgggc----gaccgactcgctcgctcgc 168
           |||||||||||||||||| ||||||||||||||||||    ||||||||| |||||||||
Sbjct: 57  gctgcatttcggccggcgggttgagtgagatctgggccactgaccgactcactcgctcgc 116

                                                                       
Query: 169 tgcgcgggagatggcgacgttcgcggtgtccggcgcgacccttggtgtggcgcgggccgc 228
           |||| ||   |||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 117 tgcgggg---atggcgacgttcgcggtgtccggcgcgaccctcggtgtggcgc-ggccgc 172

                 
Query: 229 cggcgg 234
           ||||||
Sbjct: 173 cggcgg 178



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                   
Query: 33 acgttgctcccccttctcatcgcttctcaattaatatctcc 73
          |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  acgttgctcccccttctcatcgcttctcaattaatatctcc 41

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>gb|AY357072.1| Triticum aestivum cultivar Yumai-18 starch branching enzyme IIa
            (SbeIIa) gene, promoter region and partial cds
          Length = 3094

 Score =  139 bits (70), Expect = 7e-30
 Identities = 70/70 (100%)
 Strand = Plus / Plus

                                                                        
Query: 4    gtacccgccagcttccacccccgccgcacacgttgctcccccttctcatcgcttctcaat 63
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2941 gtacccgccagcttccacccccgccgcacacgttgctcccccttctcatcgcttctcaat 3000

                      
Query: 64   taatatctcc 73
            ||||||||||
Sbjct: 3001 taatatctcc 3010



 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 51/55 (92%), Gaps = 3/55 (5%)
 Strand = Plus / Plus

                                                                   
Query: 98   ctcgggttccgcgctgctgcatttcggccggcgtgttgagtgagatctgggcgac 152
            |||||||||||||||||   ||||||||||||| |||||||||||||||||||||
Sbjct: 3015 ctcgggttccgcgctgc---atttcggccggcgggttgagtgagatctgggcgac 3066

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>dbj|AB023498.1| Oryza sativa mRNA for starch branching enzyme rbe4, complete cds
          Length = 3015

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 83/99 (83%), Gaps = 3/99 (3%)
 Strand = Plus / Plus

                                                                       
Query: 266 ggcgggctggacttgccgtcgctgctcctcaggaagaaggactc---ctctcgcgccgtc 322
           |||||| |||||||||||||| ||||| |||||| |||||||||   ||| || | ||| 
Sbjct: 219 ggcggggtggacttgccgtcggtgctcttcaggaggaaggactccttctcacgtggcgtt 278

                                                  
Query: 323 ctgagctgcgcggccgctccagggaaggtcctggtgcct 361
            ||||||||||||  ||||| |||||||| |||||||||
Sbjct: 279 gtgagctgcgcgggtgctcctgggaaggtgctggtgcct 317



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 173 cgggagatggcgacgttcgcggtgtccggcgcga 206
           |||| ||||||| |||||||||||||||||||||
Sbjct: 123 cgggggatggcgtcgttcgcggtgtccggcgcga 156

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                              
Query: 266      ggcgggctggacttgccgtcgctgctcctcaggaagaaggactcct 311
                |||||| |||||||||||||| ||||| |||||| |||||||||||
Sbjct: 20252427 ggcggggtggacttgccgtcggtgctcttcaggaggaaggactcct 20252382



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 173      cgggagatggcgacgttcgcggtgtccggcgcga 206
                |||| ||||||| |||||||||||||||||||||
Sbjct: 20252523 cgggggatggcgtcgttcgcggtgtccggcgcga 20252490



 Score = 48.1 bits (24), Expect = 0.020
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                                
Query: 41       cccccttctcatcgcttctcaattaatatctc 72
                |||||||||| ||||||||| |||||||||||
Sbjct: 20252711 cccccttctcctcgcttctcgattaatatctc 20252680



 Score = 44.1 bits (22), Expect = 0.31
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                      
Query: 324      tgagctgcgcggccgctccagggaaggtcctggtgcct 361
                ||||||||||||  ||||| |||||||| |||||||||
Sbjct: 20251877 tgagctgcgcgggtgctcctgggaaggtgctggtgcct 20251840

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>gb|AY109521.1| Zea mays CL1245_1 mRNA sequence
          Length = 2766

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 76/91 (83%), Gaps = 3/91 (3%)
 Strand = Plus / Plus

                                                                       
Query: 274 ggacttgccgtcgctgctcctcaggaagaaggac---tcctctcgcgccgtcctgagctg 330
           ||||||||||||| ||||| |||||| |||||||   | ||||||| |||| ||||||||
Sbjct: 1   ggacttgccgtcggtgctcttcaggaggaaggacgctttctctcgcaccgttctgagctg 60

                                          
Query: 331 cgcggccgctccagggaaggtcctggtgcct 361
           ||| |  ||||| || ||||| |||||||||
Sbjct: 61  cgctggtgctcctggaaaggtactggtgcct 91

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>gb|U65948.1|ZMU65948 Zea mays starch branching enzyme IIa (Sbe2a) mRNA, partial cds
          Length = 2795

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 76/91 (83%), Gaps = 3/91 (3%)
 Strand = Plus / Plus

                                                                       
Query: 274 ggacttgccgtcgctgctcctcaggaagaaggac---tcctctcgcgccgtcctgagctg 330
           ||||||||||||| ||||| |||||| |||||||   | ||||||| |||| ||||||||
Sbjct: 1   ggacttgccgtcggtgctcttcaggaggaaggacgctttctctcgcaccgttctgagctg 60

                                          
Query: 331 cgcggccgctccagggaaggtcctggtgcct 361
           ||| |  ||||| || ||||| |||||||||
Sbjct: 61  cgctggtgctcctggaaaggtactggtgcct 91

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>gb|AF228486.1|AF228486 Zea mays starch branching enzyme 2a gene, partial cds
          Length = 4668

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                           
Query: 15   cttccacccccgccgcacacgttgctccccc 45
            |||||||| ||||||||||||||||||||||
Sbjct: 3622 cttccaccaccgccgcacacgttgctccccc 3652



 Score = 48.1 bits (24), Expect = 0.020
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                
Query: 256  ggagcggaggggcgggctggacttgccgtcgctgctcctcaggaagaaggac 307
            |||||||||| | | | |||||||||||||| ||||| |||||| |||||||
Sbjct: 3924 ggagcggaggagtgcggtggacttgccgtcggtgctcttcaggaggaaggac 3975



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 178  gatggcgacgttcgcggtgtccggcgcga 206
            ||||||| ||||||| |||||||||||||
Sbjct: 3852 gatggcgtcgttcgctgtgtccggcgcga 3880

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>ref|XM_477110.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 516

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 79  ctcccctcactcggtcggcctc 100
           ||||||||||||||||||||||
Sbjct: 373 ctcccctcactcggtcggcctc 352

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>gb|AF215629.2| Crypteronia paniculata chloroplast rpl16 gene, intron sequence
          Length = 735

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 46  ttctcatcgcttctcaattaat 67
           ||||||||||||||||||||||
Sbjct: 622 ttctcatcgcttctcaattaat 643

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>emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete genome; segment 26/29
          Length = 292200

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 224    gccgccggcggagcgctgccgc 245
              ||||||||||||||||||||||
Sbjct: 188495 gccgccggcggagcgctgccgc 188516

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>emb|AJ605109.1| Dactylocladus stenostachys chloroplast rpl16 gene for ribosomal
           protein L16, intron
          Length = 1159

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 46  ttctcatcgcttctcaattaat 67
           ||||||||||||||||||||||
Sbjct: 493 ttctcatcgcttctcaattaat 472

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>emb|AJ605108.1| Crypteronia griffithii chloroplast rpl16 gene for ribosomal protein
           L16, intron
          Length = 1141

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 46  ttctcatcgcttctcaattaat 67
           ||||||||||||||||||||||
Sbjct: 490 ttctcatcgcttctcaattaat 469

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>emb|AJ605107.1| Axinandra zeylanica chloroplast rpl16 gene for ribosomal protein
           L16, intron
          Length = 1078

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 46  ttctcatcgcttctcaattaat 67
           ||||||||||||||||||||||
Sbjct: 516 ttctcatcgcttctcaattaat 495

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 79      ctcccctcactcggtcggcctc 100
               ||||||||||||||||||||||
Sbjct: 5955527 ctcccctcactcggtcggcctc 5955548

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>gb|AY151597.1| Crypteronia paniculata rpl16 gene, intron; chloroplast gene for
           chloroplast product
          Length = 962

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 46  ttctcatcgcttctcaattaat 67
           ||||||||||||||||||||||
Sbjct: 467 ttctcatcgcttctcaattaat 446

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>dbj|AP005098.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0008C11
          Length = 157205

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 79    ctcccctcactcggtcggcctc 100
             ||||||||||||||||||||||
Sbjct: 10697 ctcccctcactcggtcggcctc 10718

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>dbj|AP003748.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1136_A05
          Length = 120823

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 79    ctcccctcactcggtcggcctc 100
             ||||||||||||||||||||||
Sbjct: 97975 ctcccctcactcggtcggcctc 97996

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>emb|Y19466.1|PAN19466 Phaseolus angustissimus DNA for internal transcribed spacer 2,
          clone P21II
          Length = 229

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 12 cagcttccacccccgccgcaca 33
          ||||||||||||||||||||||
Sbjct: 60 cagcttccacccccgccgcaca 39

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>emb|AM086752.1| Senna holwayana var. holwayana chloroplast rpL16 gene, partial
           intron
          Length = 797

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 46  ttctcatcgcttctcaattaat 67
           ||||||||||||||||||||||
Sbjct: 416 ttctcatcgcttctcaattaat 437

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>ref|XM_849137.1| PREDICTED: Canis familiaris similar to Adapter-related protein
           complex 1 sigma 1B subunit (Sigma-adaptin 1B) (Adaptor
           protein complex AP-1 sigma-1B subunit) (Golgi adaptor
           HA1/AP1 adaptin sigma-1B subunit) (Clathrin assembly
           protein complex 1 sigma-1B small chain) (Sigma 1B s...
           (LOC611468), mRNA
          Length = 1520

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 257 gagcggaggggcgggctggac 277
           |||||||||||||||||||||
Sbjct: 420 gagcggaggggcgggctggac 400

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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 6       acccgccagcttccacccccgccgc 30
               ||||||||||| |||||||||||||
Sbjct: 4304118 acccgccagctgccacccccgccgc 4304094

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>gb|AF086815.2|AF086815 Acidovorax avenae subsp. citrulli s-triazine ring-cleavage gene region
          Length = 24123

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 125   ccggcgtgttgagtgagatct 145
             |||||||||||||||||||||
Sbjct: 14980 ccggcgtgttgagtgagatct 15000

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>gb|AF342826.1|AF342826 Enterobacter cloacae plasmid pPDL12 s-triazine ring-cleavage gene
             region
          Length = 22210

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 125   ccggcgtgttgagtgagatct 145
             |||||||||||||||||||||
Sbjct: 16784 ccggcgtgttgagtgagatct 16804

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>ref|NM_111873.2| Arabidopsis thaliana SEC8 AT3G10380 (SEC8) mRNA, complete cds
          Length = 3739

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 108  gcgctgctgcatttcggccg 127
            ||||||||||||||||||||
Sbjct: 2193 gcgctgctgcatttcggccg 2212

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>gb|U49941.1| Caenorhabditis elegans cosmid K10B3, complete sequence
          Length = 32464

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 45   cttctcatcgcttctcaatt 64
            ||||||||||||||||||||
Sbjct: 8531 cttctcatcgcttctcaatt 8550

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>gb|BT011118.1| Drosophila melanogaster LD13710 full insert cDNA
          Length = 1934

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 284 tcgctgctcctcaggaagaa 303
           ||||||||||||||||||||
Sbjct: 870 tcgctgctcctcaggaagaa 889

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>gb|AC009400.4|ATAC009400 Arabidopsis thaliana chromosome III BAC F14P13 genomic sequence,
            complete sequence
          Length = 87937

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 108  gcgctgctgcatttcggccg 127
            ||||||||||||||||||||
Sbjct: 7814 gcgctgctgcatttcggccg 7833

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>gb|AY059763.1| Arabidopsis thaliana unknown protein (At3g10380) mRNA, complete cds
          Length = 3702

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 108  gcgctgctgcatttcggccg 127
            ||||||||||||||||||||
Sbjct: 2193 gcgctgctgcatttcggccg 2212

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>emb|AJ010348.1|FRU010348 Fugu rubripes UBE1-like gene, PRGFR2 gene and gene encoding
           calmodulin binding protein kinase, clone 168J21
          Length = 39850

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 34  cgttgctcccccttctcatc 53
           ||||||||||||||||||||
Sbjct: 419 cgttgctcccccttctcatc 400

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>ref|NM_165320.1| Drosophila melanogaster CG10722-RB, transcript variant B (CG10722),
            mRNA
          Length = 2073

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 284  tcgctgctcctcaggaagaa 303
            ||||||||||||||||||||
Sbjct: 1028 tcgctgctcctcaggaagaa 1047

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>ref|NM_136181.1| Drosophila melanogaster CG10722-RA, transcript variant A (CG10722),
            mRNA
          Length = 2142

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 284  tcgctgctcctcaggaagaa 303
            ||||||||||||||||||||
Sbjct: 1097 tcgctgctcctcaggaagaa 1116

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>emb|AJ616913.1| Sordaria macrospora pro40 gene for putative signalling cascade
            component, exons 1-2
          Length = 6002

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 278  ttgccgtcgctgctcctcag 297
            ||||||||||||||||||||
Sbjct: 1894 ttgccgtcgctgctcctcag 1913

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>gb|AC093044.1| Drosophila melanogaster, chromosome 2L, region 38A-38B, BAC clone
              BACR10H13, complete sequence
          Length = 165585

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 284    tcgctgctcctcaggaagaa 303
              ||||||||||||||||||||
Sbjct: 121558 tcgctgctcctcaggaagaa 121577

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>dbj|AB062136.1| Streptomyces halstedii PDK1 gene for phospholipase D, complete cds
          Length = 1726

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 320  gtcctgagctgcgcggccgc 339
            ||||||||||||||||||||
Sbjct: 1647 gtcctgagctgcgcggccgc 1628

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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 173     cgggagatggcgacgttcgcggtg 196
               |||| |||||||||||||||||||
Sbjct: 2727097 cgggcgatggcgacgttcgcggtg 2727120

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>gb|AC141209.11| Mus musculus chromosome 3, clone RP23-199M5, complete sequence
          Length = 192274

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 295    caggaagaaggactcctctc 314
              ||||||||||||||||||||
Sbjct: 179141 caggaagaaggactcctctc 179122

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>dbj|AK118541.1| Arabidopsis thaliana At3g10380 mRNA for unknown protein, complete
            cds, clone: RAFL19-76-O19
          Length = 3699

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 108  gcgctgctgcatttcggccg 127
            ||||||||||||||||||||
Sbjct: 2193 gcgctgctgcatttcggccg 2212

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>gb|AF130408.1|AF130408 Streptomyces viridosporus strain T7A cellulase (celS1) mRNA,
           complete cds
          Length = 1311

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 222 gggccgccggcggagcgctgccgc 245
           ||||||||||||||||||| ||||
Sbjct: 130 gggccgccggcggagcgcttccgc 107

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>gb|AE003665.4| Drosophila melanogaster chromosome 2L, section 74 of 83 of the complete
             sequence
          Length = 157875

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 284   tcgctgctcctcaggaagaa 303
             ||||||||||||||||||||
Sbjct: 96889 tcgctgctcctcaggaagaa 96908

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>gb|AC078897.20| Mus musculus strain C57BL/6J chromosome 3 clone rp23-105k2, complete
              sequence
          Length = 200088

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 295    caggaagaaggactcctctc 314
              ||||||||||||||||||||
Sbjct: 188231 caggaagaaggactcctctc 188250

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>gb|AY553215.2| Nicotiana tabacum hexokinase 2 (Hxk2) mRNA, complete cds
          Length = 2300

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 267 gcgggctggacttgccgtcg 286
           ||||||||||||||||||||
Sbjct: 526 gcgggctggacttgccgtcg 545

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>gb|AC004364.1|AC004364 Drosophila melanogaster DNA sequence (P1 DS00863 (D58)), complete
             sequence
          Length = 78857

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 284   tcgctgctcctcaggaagaa 303
             ||||||||||||||||||||
Sbjct: 52591 tcgctgctcctcaggaagaa 52610


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,150,876
Number of Sequences: 3902068
Number of extensions: 2150876
Number of successful extensions: 47245
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46853
Number of HSP's gapped (non-prelim): 374
length of query: 361
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 339
effective length of database: 17,147,199,772
effective search space: 5812900722708
effective search space used: 5812900722708
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result