>DHX8_ARATH (Q38953) Probable pre-mRNA-splicing factor ATP-dependent RNA|
           helicase (EC 3.6.1.-)
          Length = 1168

 Score = 82.0 bits (201), Expect = 3e-16
 Identities = 38/62 (61%), Positives = 49/62 (79%)
 Frame = +1

Query: 106 LRKLEYLSLVSKVCSELETHIGVGDKVLAEFITELGRDAPSVADFDAKLKANGADLPDYF 285
           L KL +LSLVS VC+ELETH+G  +KVLAEFI +LGR + +V +FD  LK  GA++PDYF
Sbjct: 6   LNKLNHLSLVSNVCNELETHLGSAEKVLAEFIIDLGRHSETVDEFDKNLKEAGAEMPDYF 65

Query: 286 IR 291
           +R
Sbjct: 66  VR 67

>DHX8_HUMAN (Q14562) ATP-dependent RNA helicase DHX8 (EC 3.6.1.-) (DEAH box|
           protein 8) (RNA helicase HRH1)
          Length = 1220

 Score = 66.6 bits (161), Expect = 2e-11
 Identities = 35/70 (50%), Positives = 44/70 (62%)
 Frame = +1

Query: 79  SAEGPGDDGLRKLEYLSLVSKVCSELETHIGVGDKVLAEFITELGRDAPSVADFDAKLKA 258
           S  GP ++ L KLEYLSLVSKVC+EL+ H+G+ DK LAEF+  L     +   F A L  
Sbjct: 14  SEPGPAEE-LAKLEYLSLVSKVCTELDNHLGINDKDLAEFVISLAEKNTTFDTFKASLVK 72

Query: 259 NGADLPDYFI 288
           NGA+  D  I
Sbjct: 73  NGAEFTDSLI 82

>DHX8_SCHPO (O42643) Putative pre-mRNA-splicing factor ATP-dependent RNA|
           helicase C10F6.02c (EC 3.6.1.-)
          Length = 1168

 Score = 55.1 bits (131), Expect = 5e-08
 Identities = 27/64 (42%), Positives = 39/64 (60%)
 Frame = +1

Query: 100 DGLRKLEYLSLVSKVCSELETHIGVGDKVLAEFITELGRDAPSVADFDAKLKANGADLPD 279
           D L++LEYLSLVSKV SE+  H G+ D  LAEFI  L   + +  +F   + + G +  D
Sbjct: 2   DDLKELEYLSLVSKVASEIRNHTGIDDNTLAEFIINLHDQSKNYDEFKNNVLSCGGEFTD 61

Query: 280 YFIR 291
            F++
Sbjct: 62  SFLQ 65

>MOG5_CAEEL (Q09530) Probable pre-mRNA-splicing factor ATP-dependent RNA|
           helicase mog-5 (EC 3.6.1.-) (Sex determination protein
           mog-5) (Masculinization of germ line protein 5)
          Length = 1200

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 23/51 (45%), Positives = 33/51 (64%)
 Frame = +1

Query: 112 KLEYLSLVSKVCSELETHIGVGDKVLAEFITELGRDAPSVADFDAKLKANG 264
           +LE+LSLVSKV SE+E H GV +K +AEF+  L ++ P+       L + G
Sbjct: 3   QLEHLSLVSKVLSEVENHFGVVEKDVAEFVIHLAQENPTFDKLKKALDSQG 53

>LGRC_BREPA (Q70LM5) Linear gramicidin synthetase subunit C [Includes:|
            ATP-dependent valine adenylase (ValA) (Valine activase);
            ATP-dependent D-valine adenylase (D-ValA) (D-valine
            activase); Valine racemase [ATP-hydrolyzing] (EC
            5.1.1.-); ATP-dependent tr
          Length = 7756

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 175  GDKVLAEFITELGRDAPSVADFDAKLKANGADLPDYFI 288
            G+K L  ++T    DAP VAD  A LK     LP+Y +
Sbjct: 904  GEKHLTAYVTVAKDDAPEVADLQAWLKTK---LPEYMV 938

>RHBF_RHIME (Q9Z3Q7) Rhizobactin siderophore biosynthesis protein rhbF|
          Length = 601

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 145 CSELETHIGVGDKVLAEFITELGRDAPSVADFDAKLKANGADLPD 279
           C+E+   +GV    +A FI ELG    S A   A+    GA+L +
Sbjct: 95  CAEVLPKLGVKPMTVAHFIKELGNTLVSDAHIAARASKTGAELAE 139

>RUVA_NITWN (Q3SP13) Holliday junction ATP-dependent DNA helicase ruvA (EC|
           3.6.1.-)
          Length = 205

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 169 GVGDKVLAEFITELGRDAPSVADFDAKLKANGADLPD 279
           G+G KV    +TEL   APS A+ D  +     DL D
Sbjct: 115 GIGPKVAERIVTELKDKAPSFANVDPTVVHLAGDLDD 151

>ENV_SIVVG (P27977) Envelope polyprotein GP160 precursor [Contains: Exterior|
           membrane glycoprotein (GP120); Transmembrane
           glycoprotein (GP41)]
          Length = 877

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 46  LHIHPLTMAPASAEGPGDDG 105
           +HIHP    P +AEGPG+ G
Sbjct: 746 IHIHPWKGQPDNAEGPGEGG 765

>Y4104_YERPE (Q8Z9U1) Putative reductase YPO4104/y4119/YP4011 (EC 1.3.1.-)|
          Length = 399

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 18/51 (35%), Positives = 30/51 (58%)
 Frame = +1

Query: 121 YLSLVSKVCSELETHIGVGDKVLAEFITELGRDAPSVADFDAKLKANGADL 273
           YLSL+ KV  E  TH G  ++V + +   L  D+P + D + +L+A+  +L
Sbjct: 288 YLSLLFKVMKEKGTHEGCIEQVYSLYKDSLCGDSPHM-DQEGRLRADYKEL 337

>Y3950_YERPS (Q663S5) Putative reductase YPTB3950 (EC 1.3.1.-)|
          Length = 399

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 18/51 (35%), Positives = 30/51 (58%)
 Frame = +1

Query: 121 YLSLVSKVCSELETHIGVGDKVLAEFITELGRDAPSVADFDAKLKANGADL 273
           YLSL+ KV  E  TH G  ++V + +   L  D+P + D + +L+A+  +L
Sbjct: 288 YLSLLFKVMKEKGTHEGCIEQVYSLYKDSLCGDSPHM-DQEGRLRADYKEL 337

>PRKDC_XENLA (Q9DEI1) DNA-dependent protein kinase catalytic subunit (EC 2.7.11.1)|
            (DNA-PK catalytic subunit) (DNA-PKcs)
          Length = 4146

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 67   MAPASAEGPGDDGLRKLEYLSLVSKVCSELETHIGVGDKVLAEF 198
            +AP  A    D  + KL + SL S + ++  + I V DK+L +F
Sbjct: 2816 IAPLQALAQRDPTMAKLLFSSLFSGILTDTASDISVTDKLLKQF 2859

>ZBT38_RAT (Q5EXX3) Zinc finger and BTB domain-containing protein 38 (Zinc|
           finger protein expressed in neurons) (Zenon)
          Length = 1203

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -2

Query: 209 SSVMNSAST-LSPTPMCVSSSEHT 141
           SS+ NS ST L   P+CVSS EH+
Sbjct: 672 SSIGNSVSTTLQAEPVCVSSGEHS 695

>ATPA_BUCAP (O51874) ATP synthase alpha chain (EC 3.6.3.14) (ATP synthase F1|
           sector alpha subunit)
          Length = 510

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 258 GLELGVEIGDRGGVAAELRNELSQYLVAYTDVRLQLRAHLGDE 130
           G  +G    DRG  A  + ++LS++ VAY  + L LR   G E
Sbjct: 242 GCAMGEYFRDRGKDALIVYDDLSKHAVAYRQISLLLRRPPGRE 284


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.139    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,363,735
Number of Sequences: 219361
Number of extensions: 628072
Number of successful extensions: 2434
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2429
length of database: 80,573,946
effective HSP length: 72
effective length of database: 64,779,954
effective search space used: 1554718896
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)