>ref|XM_465115.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3723

 Score =  234 bits (118), Expect = 1e-58
 Identities = 193/218 (88%)
 Strand = Plus / Plus

                                                                       
Query: 74  cggcgtcggcggagggtcccggcgacgacgggctccgaaagttggagtacctatcgctcg 133
           ||||| |||||| ||| ||| |||||||||||||||| ||| |||||||||| ||||| |
Sbjct: 11  cggcggcggcggcggggcccagcgacgacgggctccggaagctggagtacctctcgctgg 70

                                                                       
Query: 134 tctccaaggtgtgctcggagctggagacgcacatcggtgtaggcgacaaggtactggctg 193
           |||||||||||||||||||||||||||| ||||| || || ||||||||||| || || |
Sbjct: 71  tctccaaggtgtgctcggagctggagacccacattggcgtcggcgacaaggtgctcgccg 130

                                                                       
Query: 194 agttcattacggagctcggccgcgacgccccctcggtcgccgatttcgacgccaagctca 253
           ||||||| || ||||||||||||||| || |||| |||||||| |||||| |||||||||
Sbjct: 131 agttcatcaccgagctcggccgcgactccgcctccgtcgccgacttcgacaccaagctca 190

                                                 
Query: 254 aggccaacggcgctgacctccccgactacttcatccgc 291
           ||||||||||||| |||||||| ||||||||| |||||
Sbjct: 191 aggccaacggcgccgacctcccggactacttcgtccgc 228

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  234 bits (118), Expect = 1e-58
 Identities = 193/218 (88%)
 Strand = Plus / Plus

                                                                            
Query: 74       cggcgtcggcggagggtcccggcgacgacgggctccgaaagttggagtacctatcgctcg 133
                ||||| |||||| ||| ||| |||||||||||||||| ||| |||||||||| ||||| |
Sbjct: 11667465 cggcggcggcggcggggcccagcgacgacgggctccggaagctggagtacctctcgctgg 11667524

                                                                            
Query: 134      tctccaaggtgtgctcggagctggagacgcacatcggtgtaggcgacaaggtactggctg 193
                |||||||||||||||||||||||||||| ||||| || || ||||||||||| || || |
Sbjct: 11667525 tctccaaggtgtgctcggagctggagacccacattggcgtcggcgacaaggtgctcgccg 11667584

                                                                            
Query: 194      agttcattacggagctcggccgcgacgccccctcggtcgccgatttcgacgccaagctca 253
                ||||||| || ||||||||||||||| || |||| |||||||| |||||| |||||||||
Sbjct: 11667585 agttcatcaccgagctcggccgcgactccgcctccgtcgccgacttcgacaccaagctca 11667644

                                                      
Query: 254      aggccaacggcgctgacctccccgactacttcatccgc 291
                ||||||||||||| |||||||| ||||||||| |||||
Sbjct: 11667645 aggccaacggcgccgacctcccggactacttcgtccgc 11667682



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 69       ggcgccggcgtcggcggagg 88
                ||||||||||||||||||||
Sbjct: 23772527 ggcgccggcgtcggcggagg 23772546



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 65      ccatggcgccggcgtcggcggagg 88
               ||||||||||||||||| ||||||
Sbjct: 4288392 ccatggcgccggcgtcgccggagg 4288415

>dbj|AP005532.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0010K08
          Length = 184760

 Score =  234 bits (118), Expect = 1e-58
 Identities = 193/218 (88%)
 Strand = Plus / Plus

                                                                          
Query: 74     cggcgtcggcggagggtcccggcgacgacgggctccgaaagttggagtacctatcgctcg 133
              ||||| |||||| ||| ||| |||||||||||||||| ||| |||||||||| ||||| |
Sbjct: 113754 cggcggcggcggcggggcccagcgacgacgggctccggaagctggagtacctctcgctgg 113813

                                                                          
Query: 134    tctccaaggtgtgctcggagctggagacgcacatcggtgtaggcgacaaggtactggctg 193
              |||||||||||||||||||||||||||| ||||| || || ||||||||||| || || |
Sbjct: 113814 tctccaaggtgtgctcggagctggagacccacattggcgtcggcgacaaggtgctcgccg 113873

                                                                          
Query: 194    agttcattacggagctcggccgcgacgccccctcggtcgccgatttcgacgccaagctca 253
              ||||||| || ||||||||||||||| || |||| |||||||| |||||| |||||||||
Sbjct: 113874 agttcatcaccgagctcggccgcgactccgcctccgtcgccgacttcgacaccaagctca 113933

                                                    
Query: 254    aggccaacggcgctgacctccccgactacttcatccgc 291
              ||||||||||||| |||||||| ||||||||| |||||
Sbjct: 113934 aggccaacggcgccgacctcccggactacttcgtccgc 113971

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 95.6 bits (48), Expect = 7e-17
 Identities = 129/156 (82%)
 Strand = Plus / Minus

                                                                            
Query: 127      tcgctcgtctccaaggtgtgctcggagctggagacgcacatcggtgtaggcgacaaggta 186
                ||||||||||||||||| ||||||||||||||| ||||| |||| || ||||||   || 
Sbjct: 13569803 tcgctcgtctccaaggtctgctcggagctggaggcgcacctcggcgtcggcgaccgcgtc 13569744

                                                                            
Query: 187      ctggctgagttcattacggagctcggccgcgacgccccctcggtcgccgatttcgacgcc 246
                || || ||||||||    || || |||||||   |||| || ||||| || |||||||||
Sbjct: 13569743 ctcgcggagttcatcgtcgacctgggccgcgcatccccttccgtcgcagacttcgacgcc 13569684

                                                    
Query: 247      aagctcaaggccaacggcgctgacctccccgactac 282
                |||||||||||| ||||||||||||| || ||||||
Sbjct: 13569683 aagctcaaggcccacggcgctgacctgccggactac 13569648

>dbj|AP003572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0459H02
          Length = 168230

 Score = 95.6 bits (48), Expect = 7e-17
 Identities = 129/156 (82%)
 Strand = Plus / Minus

                                                                         
Query: 127   tcgctcgtctccaaggtgtgctcggagctggagacgcacatcggtgtaggcgacaaggta 186
             ||||||||||||||||| ||||||||||||||| ||||| |||| || ||||||   || 
Sbjct: 98293 tcgctcgtctccaaggtctgctcggagctggaggcgcacctcggcgtcggcgaccgcgtc 98234

                                                                         
Query: 187   ctggctgagttcattacggagctcggccgcgacgccccctcggtcgccgatttcgacgcc 246
             || || ||||||||    || || |||||||   |||| || ||||| || |||||||||
Sbjct: 98233 ctcgcggagttcatcgtcgacctgggccgcgcatccccttccgtcgcagacttcgacgcc 98174

                                                 
Query: 247   aagctcaaggccaacggcgctgacctccccgactac 282
             |||||||||||| ||||||||||||| || ||||||
Sbjct: 98173 aagctcaaggcccacggcgctgacctgccggactac 98138

>dbj|AK100422.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088B11, full
           insert sequence
          Length = 3516

 Score = 95.6 bits (48), Expect = 7e-17
 Identities = 129/156 (82%)
 Strand = Plus / Plus

                                                                       
Query: 127 tcgctcgtctccaaggtgtgctcggagctggagacgcacatcggtgtaggcgacaaggta 186
           ||||||||||||||||| ||||||||||||||| ||||| |||| || ||||||   || 
Sbjct: 105 tcgctcgtctccaaggtctgctcggagctggaggcgcacctcggcgtcggcgaccgcgtc 164

                                                                       
Query: 187 ctggctgagttcattacggagctcggccgcgacgccccctcggtcgccgatttcgacgcc 246
           || || ||||||||    || || |||||||   |||| || ||||| || |||||||||
Sbjct: 165 ctcgcggagttcatcgtcgacctgggccgcgcatccccttccgtcgcagacttcgacgcc 224

                                               
Query: 247 aagctcaaggccaacggcgctgacctccccgactac 282
           |||||||||||| ||||||||||||| || ||||||
Sbjct: 225 aagctcaaggcccacggcgctgacctgccggactac 260

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                                
Query: 238      ttcgacgccaagctcaaggccaacggcgctgacctccccgactacttc 285
                |||||| |||||||||||||||||||||| |||||||| |||||||||
Sbjct: 15926844 ttcgacaccaagctcaaggccaacggcgccgacctcccggactacttc 15926891

>dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1081_G10
          Length = 107955

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                             
Query: 238   ttcgacgccaagctcaaggccaacggcgctgacctccccgactacttc 285
             |||||| |||||||||||||||||||||| |||||||| |||||||||
Sbjct: 89970 ttcgacaccaagctcaaggccaacggcgccgacctcccggactacttc 90017

>ref|XM_469563.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 585

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                     
Query: 240 cgacgccaagctcaaggccaacggcgctgacctccccgacta 281
           |||| |||||||||||||||||||||| |||||||| |||||
Sbjct: 322 cgacaccaagctcaaggccaacggcgccgacctcccggacta 281

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                          
Query: 240      cgacgccaagctcaaggccaacggcgctgacctccccgacta 281
                |||| |||||||||||||||||||||| |||||||| |||||
Sbjct: 28736965 cgacaccaagctcaaggccaacggcgccgacctcccggacta 28736924

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                          
Query: 240      cgacgccaagctcaaggccaacggcgctgacctccccgacta 281
                |||| |||||||||||||||||||||| |||||||| |||||
Sbjct: 28828289 cgacaccaagctcaaggccaacggcgccgacctcccggacta 28828248

>gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete
             sequence
          Length = 147344

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                       
Query: 240   cgacgccaagctcaaggccaacggcgctgacctccccgacta 281
             |||| |||||||||||||||||||||| |||||||| |||||
Sbjct: 43946 cgacaccaagctcaaggccaacggcgccgacctcccggacta 43905

>gb|AY347826.1| Malus x domestica clone 9-2 ATP-dependent RNA helicase-like mRNA,
           partial sequence
          Length = 210

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                
Query: 112 aagttggagtacctatcgctcgtctccaaggtgtgctcggagctggagacgca 164
           |||||||||||||| ||||| |||||||| || || || ||||| ||||||||
Sbjct: 88  aagttggagtacctttcgctggtctccaaagtttgttcagagctcgagacgca 140

>gb|AE005928.1| Caulobacter crescentus CB15 section 254 of 359 of the complete genome
          Length = 10813

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 230  tcgccgatttcgacgccaagct 251
            ||||||||||||||||||||||
Sbjct: 8358 tcgccgatttcgacgccaagct 8337

>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 243     cgccaagctcaaggccaacggc 264
               ||||||||||||||||||||||
Sbjct: 1380402 cgccaagctcaaggccaacggc 1380381

>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 225    ctcggtcgccgatttcgacgcc 246
              ||||||||||||||||||||||
Sbjct: 918128 ctcggtcgccgatttcgacgcc 918149

>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete
              sequence
          Length = 2105742

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 239    tcgacgccaagctcaaggcca 259
              |||||||||||||||||||||
Sbjct: 270247 tcgacgccaagctcaaggcca 270227

>ref|XM_569406.1| Cryptococcus neoformans var. neoformans JEC21 glutamate dehydrogenase
            (NADP+) (CNC00920) partial mRNA
          Length = 1815

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 239  tcgacgccaagctcaaggcca 259
            |||||||||||||||||||||
Sbjct: 1432 tcgacgccaagctcaaggcca 1452

>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 227     cggtcgccgatttcgacgccaagct 251
               |||| ||||||||||||||||||||
Sbjct: 2908433 cggttgccgatttcgacgccaagct 2908409

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 244     gccaagctcaaggccaacggc 264
               |||||||||||||||||||||
Sbjct: 2403148 gccaagctcaaggccaacggc 2403168

>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 227     cggtcgccgatttcgacgccaagct 251
               |||| ||||||||||||||||||||
Sbjct: 2930167 cggttgccgatttcgacgccaagct 2930143

>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 245     ccaagctcaaggccaacggc 264
               ||||||||||||||||||||
Sbjct: 1488947 ccaagctcaaggccaacggc 1488928

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 246     caagctcaaggccaacggcg 265
               ||||||||||||||||||||
Sbjct: 4118361 caagctcaaggccaacggcg 4118380

>dbj|AP004838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0504A05
          Length = 148360

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 65     ccatggcgccggcgtcggcggagg 88
              ||||||||||||||||| ||||||
Sbjct: 105206 ccatggcgccggcgtcgccggagg 105229

>dbj|AP004111.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1058_F07
          Length = 95841

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    ggcgccggcgtcggcggagg 88
             ||||||||||||||||||||
Sbjct: 83111 ggcgccggcgtcggcggagg 83130

>dbj|AK119941.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-B07, full
           insert sequence
          Length = 867

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 65  ccatggcgccggcgtcggcggagg 88
           ||||||||||||||||| ||||||
Sbjct: 351 ccatggcgccggcgtcgccggagg 328


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,604,861
Number of Sequences: 3902068
Number of extensions: 1604861
Number of successful extensions: 34175
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33450
Number of HSP's gapped (non-prelim): 725
length of query: 291
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 269
effective length of database: 17,147,199,772
effective search space: 4612596738668
effective search space used: 4612596738668
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)