ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl09g07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 276 bits (139), Expect = 4e-71 Identities = 196/215 (91%) Strand = Plus / Plus Query: 74 cgatgcccgccgcggcagcctccggcggcggcgtggccgacgccgaggagcttttccgca 133 ||||||| |||||||||| |||||||||||||| |||||||||||||||||| ||||||| Sbjct: 32862549 cgatgcctgccgcggcagtctccggcggcggcgcggccgacgccgaggagctgttccgca 32862608 Query: 134 ccaagcgcgtcgcggagatccgcgaggtggaggccgccacccgccgcgagatctccgcca 193 | | ||| || |||||||||||| || ||||| |||||| ||||||||||||||||||| Sbjct: 32862609 cgagacgcatcccggagatccgcgcggcggagggcgccacgcgccgcgagatctccgcca 32862668 Query: 194 aggaggaggagctccggcagctcgtcggccgcagctaccgcgacctcctcgactccgccg 253 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct: 32862669 aggaggaggagctccgccagctcgtcggccgcagctaccgcgacctcctcgactccgcgg 32862728 Query: 254 actccatcctgctcatcaagcagtcctcggacgcc 288 |||| || || ||||||||||||||||| |||||| Sbjct: 32862729 actcgatactcctcatcaagcagtcctccgacgcc 32862763
>dbj|AP003344.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0413G02 Length = 155633 Score = 276 bits (139), Expect = 4e-71 Identities = 196/215 (91%) Strand = Plus / Plus Query: 74 cgatgcccgccgcggcagcctccggcggcggcgtggccgacgccgaggagcttttccgca 133 ||||||| |||||||||| |||||||||||||| |||||||||||||||||| ||||||| Sbjct: 83954 cgatgcctgccgcggcagtctccggcggcggcgcggccgacgccgaggagctgttccgca 84013 Query: 134 ccaagcgcgtcgcggagatccgcgaggtggaggccgccacccgccgcgagatctccgcca 193 | | ||| || |||||||||||| || ||||| |||||| ||||||||||||||||||| Sbjct: 84014 cgagacgcatcccggagatccgcgcggcggagggcgccacgcgccgcgagatctccgcca 84073 Query: 194 aggaggaggagctccggcagctcgtcggccgcagctaccgcgacctcctcgactccgccg 253 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct: 84074 aggaggaggagctccgccagctcgtcggccgcagctaccgcgacctcctcgactccgcgg 84133 Query: 254 actccatcctgctcatcaagcagtcctcggacgcc 288 |||| || || ||||||||||||||||| |||||| Sbjct: 84134 actcgatactcctcatcaagcagtcctccgacgcc 84168
>ref|NM_191472.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3087 Score = 272 bits (137), Expect = 6e-70 Identities = 194/213 (91%) Strand = Plus / Plus Query: 76 atgcccgccgcggcagcctccggcggcggcgtggccgacgccgaggagcttttccgcacc 135 ||||| |||||||||| |||||||||||||| |||||||||||||||||| |||||||| Sbjct: 1 atgcctgccgcggcagtctccggcggcggcgcggccgacgccgaggagctgttccgcacg 60 Query: 136 aagcgcgtcgcggagatccgcgaggtggaggccgccacccgccgcgagatctccgccaag 195 | ||| || |||||||||||| || ||||| |||||| ||||||||||||||||||||| Sbjct: 61 agacgcatcccggagatccgcgcggcggagggcgccacgcgccgcgagatctccgccaag 120 Query: 196 gaggaggagctccggcagctcgtcggccgcagctaccgcgacctcctcgactccgccgac 255 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 121 gaggaggagctccgccagctcgtcggccgcagctaccgcgacctcctcgactccgcggac 180 Query: 256 tccatcctgctcatcaagcagtcctcggacgcc 288 || || || ||||||||||||||||| |||||| Sbjct: 181 tcgatactcctcatcaagcagtcctccgacgcc 213
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 46.1 bits (23), Expect = 0.062 Identities = 26/27 (96%) Strand = Plus / Plus Query: 147 ggagatccgcgaggtggaggccgccac 173 ||||||||||| ||||||||||||||| Sbjct: 1332828 ggagatccgcgcggtggaggccgccac 1332854 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 tcgcggagatccgcgaggtg 162 |||||||||||||||||||| Sbjct: 3358722 tcgcggagatccgcgaggtg 3358703
>emb|X70703.1|PSMAP P.sativum mRNA for MAP kinase homologue Length = 1522 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 194 aggaggaggagctccggcagct 215 |||||||||||||||||||||| Sbjct: 33 aggaggaggagctccggcagct 54
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 159 ggtggaggccgccacccgccgc 180 |||||||||||||||||||||| Sbjct: 2803376 ggtggaggccgccacccgccgc 2803397
>ref|XM_512393.1| PREDICTED: Pan troglodytes similar to FLJ00153 protein (LOC455730), mRNA Length = 2676 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 190 gccaaggaggaggagctccggcagc 214 ||||||||||||||||| ||||||| Sbjct: 511 gccaaggaggaggagctgcggcagc 535
>gb|BC014252.2| Homo sapiens cDNA clone IMAGE:4635227, partial cds Length = 1736 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 190 gccaaggaggaggagctccggcagc 214 ||||||||||||||||| ||||||| Sbjct: 721 gccaaggaggaggagctgcggcagc 745
>gb|AY143389.1| Eimeria tenella lactate dehydrogenase (LDH) mRNA, complete cds Length = 1876 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 145 gcggagatccgcgaggtggag 165 ||||||||||||||||||||| Sbjct: 823 gcggagatccgcgaggtggag 843
>gb|BC036041.1| Homo sapiens hypothetical protein MGC20983, mRNA (cDNA clone IMAGE:5271547), with apparent retained intron Length = 2464 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 190 gccaaggaggaggagctccggcagc 214 ||||||||||||||||| ||||||| Sbjct: 1451 gccaaggaggaggagctgcggcagc 1475
>gb|BC050355.1| Homo sapiens hypothetical protein MGC20983, mRNA (cDNA clone IMAGE:4827996), partial cds Length = 2463 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 190 gccaaggaggaggagctccggcagc 214 ||||||||||||||||| ||||||| Sbjct: 1451 gccaaggaggaggagctgcggcagc 1475
>gb|AC008481.9| Homo sapiens chromosome 19 clone CTC-398G3, complete sequence Length = 142645 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Minus Query: 190 gccaaggaggaggagctccggcagc 214 ||||||||||||||||| ||||||| Sbjct: 7972 gccaaggaggaggagctgcggcagc 7948
>dbj|AK056363.1| Homo sapiens cDNA FLJ31801 fis, clone NT2RI2009066, weakly similar to PLECTIN Length = 2082 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 190 gccaaggaggaggagctccggcagc 214 ||||||||||||||||| ||||||| Sbjct: 1085 gccaaggaggaggagctgcggcagc 1109
>gb|AC024575.6| Homo sapiens chromosome 19 clone CTD-2342J14, complete sequence Length = 119638 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Minus Query: 190 gccaaggaggaggagctccggcagc 214 ||||||||||||||||| ||||||| Sbjct: 99246 gccaaggaggaggagctgcggcagc 99222
>dbj|AB046020.1| Macaca fascicularis brain cDNA, clone:QccE-16176, similar to human hypothetical protein MGC20983, mRNA, NM_145045.1 Length = 1543 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 190 gccaaggaggaggagctccggcagc 214 ||||||||||||||||| ||||||| Sbjct: 531 gccaaggaggaggagctgcggcagc 555
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 43 cctcctggatctcgccgcgcg 63 ||||||||||||||||||||| Sbjct: 3139213 cctcctggatctcgccgcgcg 3139193
>ref|NM_145045.3| Homo sapiens hypothetical protein MGC20983 (MGC20983), mRNA Length = 2136 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 190 gccaaggaggaggagctccggcagc 214 ||||||||||||||||| ||||||| Sbjct: 1123 gccaaggaggaggagctgcggcagc 1147
>dbj|AK110089.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-160-G08, full insert sequence Length = 3663 Score = 42.1 bits (21), Expect = 0.97 Identities = 27/29 (93%) Strand = Plus / Plus Query: 177 ccgcgagatctccgccaaggaggaggagc 205 |||||||||||||| ||||||| |||||| Sbjct: 2060 ccgcgagatctccgacaaggagaaggagc 2088
>dbj|AP007285.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01H08, TM0053, complete sequence Length = 109326 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 190 gccaaggaggaggagctccgg 210 ||||||||||||||||||||| Sbjct: 27604 gccaaggaggaggagctccgg 27624
>ref|XM_480606.1| Oryza sativa (japonica cultivar-group), mRNA Length = 708 Score = 40.1 bits (20), Expect = 3.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 80 ccgccgcggcagcctccggcggcggcgt 107 ||||||| |||||| ||||||||||||| Sbjct: 526 ccgccgccgcagccgccggcggcggcgt 553
>ref|XM_466619.1| Oryza sativa (japonica cultivar-group), mRNA Length = 714 Score = 40.1 bits (20), Expect = 3.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 79 cccgccgcggcagcctccggcggcggcg 106 |||||| |||||||| |||||||||||| Sbjct: 128 cccgccacggcagccgccggcggcggcg 101
>gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940117D9, complete sequence Length = 143368 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 cggcggcgtggccgacgccg 118 |||||||||||||||||||| Sbjct: 51617 cggcggcgtggccgacgccg 51598
>ref|XM_470783.1| Oryza sativa (japonica cultivar-group), mRNA Length = 954 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 98 gcggcggcgtggccgacgccgagg 121 |||||||||||||||||| ||||| Sbjct: 494 gcggcggcgtggccgacggcgagg 471
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 gcctccggcggcggcgtggc 110 |||||||||||||||||||| Sbjct: 263015 gcctccggcggcggcgtggc 263034
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 cgacctcctcgactccgccg 253 |||||||||||||||||||| Sbjct: 3261353 cgacctcctcgactccgccg 3261334
>gb|BC033207.1| Homo sapiens hypothetical protein BC018697, mRNA (cDNA clone MGC:45863 IMAGE:4903484), complete cds Length = 1898 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 cgccgcggcagcctccggcg 100 |||||||||||||||||||| Sbjct: 1528 cgccgcggcagcctccggcg 1509
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 cgacctcctcgactccgccg 253 |||||||||||||||||||| Sbjct: 719680 cgacctcctcgactccgccg 719661
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 98 gcggcggcgtggccgacgccgagg 121 |||||||||||||||||| ||||| Sbjct: 15351240 gcggcggcgtggccgacggcgagg 15351263
>emb|AJ245441.1|SPA245441 Saprolegnia parasitica mRNA for putative RNA binding protein (puf1 gene), strain Spt Length = 2467 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 cgtggccgacgccgaggagc 124 |||||||||||||||||||| Sbjct: 2225 cgtggccgacgccgaggagc 2244
>gb|AC092075.7| Oryza sativa chromosome 3 BAC OSJNBa0017N12 genomic sequence, complete sequence Length = 164705 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 98 gcggcggcgtggccgacgccgagg 121 |||||||||||||||||| ||||| Sbjct: 150286 gcggcggcgtggccgacggcgagg 150263
>gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome Length = 241087 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 cgtggccgacgccgaggagc 124 |||||||||||||||||||| Sbjct: 149043 cgtggccgacgccgaggagc 149062
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 cgacctcctcgactccgccg 253 |||||||||||||||||||| Sbjct: 528325 cgacctcctcgactccgccg 528306
>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29 Length = 296500 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 ccgcgacctcctcgactccg 250 |||||||||||||||||||| Sbjct: 168530 ccgcgacctcctcgactccg 168511
>gb|AC008888.7| Homo sapiens chromosome 19 clone CTD-2221F12, complete sequence Length = 119631 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 cgccgcggcagcctccggcg 100 |||||||||||||||||||| Sbjct: 41109 cgccgcggcagcctccggcg 41128
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 3.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 154 cgcgaggtggaggccgccacccgccgcg 181 |||||| |||| |||||||||||||||| Sbjct: 3367507 cgcgagctggaagccgccacccgccgcg 3367480
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 83 ccgcggcagcctccggcggcggcg 106 ||||||| |||||||||||||||| Sbjct: 20754253 ccgcggcggcctccggcggcggcg 20754230
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 3.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 80 ccgccgcggcagcctccggcggcggcgt 107 ||||||| |||||| ||||||||||||| Sbjct: 6155837 ccgccgccgcagccgccggcggcggcgt 6155810
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 98 gcggcggcgtggccgacgccgagg 121 |||||||||||||||||| ||||| Sbjct: 15345774 gcggcggcgtggccgacggcgagg 15345797
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 3.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 79 cccgccgcggcagcctccggcggcggcg 106 |||||| |||||||| |||||||||||| Sbjct: 23734596 cccgccacggcagccgccggcggcggcg 23734623
>ref|NM_145807.1| Homo sapiens hypothetical protein BC018697 (LOC126147), mRNA Length = 1898 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 cgccgcggcagcctccggcg 100 |||||||||||||||||||| Sbjct: 1528 cgccgcggcagcctccggcg 1509
>gb|AC097628.2| Takifugu rubripes clone 264E2, complete sequence Length = 88203 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 gcagcctccggcggcggcgt 107 |||||||||||||||||||| Sbjct: 648 gcagcctccggcggcggcgt 667
>dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0569E11 Length = 157319 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 83 ccgcggcagcctccggcggcggcg 106 ||||||| |||||||||||||||| Sbjct: 29282 ccgcggcggcctccggcggcggcg 29259
>dbj|AP004111.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1058_F07 Length = 95841 Score = 40.1 bits (20), Expect = 3.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 79 cccgccgcggcagcctccggcggcggcg 106 |||||| |||||||| |||||||||||| Sbjct: 45180 cccgccacggcagccgccggcggcggcg 45207
>dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1119_C05 Length = 126112 Score = 40.1 bits (20), Expect = 3.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 80 ccgccgcggcagcctccggcggcggcgt 107 ||||||| |||||| ||||||||||||| Sbjct: 19230 ccgccgccgcagccgccggcggcggcgt 19203
>dbj|AP004565.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0486F07 Length = 154926 Score = 40.1 bits (20), Expect = 3.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 80 ccgccgcggcagcctccggcggcggcgt 107 ||||||| |||||| ||||||||||||| Sbjct: 111854 ccgccgccgcagccgccggcggcggcgt 111827
>gb|BC018697.2| Homo sapiens hypothetical protein BC018697, mRNA (cDNA clone MGC:4067 IMAGE:2961115), complete cds Length = 1863 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 cgccgcggcagcctccggcg 100 |||||||||||||||||||| Sbjct: 1528 cgccgcggcagcctccggcg 1509
>gb|BC018654.2| Homo sapiens hypothetical protein BC018697, mRNA (cDNA clone MGC:2419 IMAGE:2961115), complete cds Length = 1863 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 cgccgcggcagcctccggcg 100 |||||||||||||||||||| Sbjct: 1528 cgccgcggcagcctccggcg 1509 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,918,482 Number of Sequences: 3902068 Number of extensions: 2918482 Number of successful extensions: 61693 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60173 Number of HSP's gapped (non-prelim): 1520 length of query: 293 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 271 effective length of database: 17,147,199,772 effective search space: 4646891138212 effective search space used: 4646891138212 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
