>COG1_MOUSE (Q9Z160) Conserved oligomeric Golgi complex component 1 (Low|
           density lipoprotein receptor defect B-complementing
           protein)
          Length = 980

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 20/37 (54%), Positives = 23/37 (62%)
 Frame = +2

Query: 128 LFRTKLVSEIREVEAATRREISAKEEELRQLVGRSYR 238
           LF T    EIR +E   R EI  K+EELRQ+VG  YR
Sbjct: 21  LFETHGAEEIRGLERQVRAEIEHKKEELRQMVGERYR 57

>COG1_HUMAN (Q8WTW3) Conserved oligomeric Golgi complex component 1|
          Length = 980

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 20/37 (54%), Positives = 23/37 (62%)
 Frame = +2

Query: 128 LFRTKLVSEIREVEAATRREISAKEEELRQLVGRSYR 238
           LF T    EIR +E   R EI  K+EELRQ+VG  YR
Sbjct: 21  LFETHGAEEIRGLERQVRAEIEHKKEELRQMVGERYR 57

>COG1_DROME (Q9VGC3) Putative conserved oligomeric Golgi complex component 1|
          Length = 886

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +2

Query: 122 EELFRTKLVSEIREVEAATRREISAKEEELRQLVGRSYR 238
           + LF    VSEI EV    +  +  K EELR  VG  YR
Sbjct: 11  DTLFEQHSVSEIDEVHKKIQSVVENKREELRTHVGERYR 49

>APOE_PIG (P18650) Apolipoprotein E precursor (Apo-E)|
          Length = 317

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 122 EELFRTKLVSEIREVEAATRREISAKEEELRQLVG 226
           EEL  TK+  E+ E+   + +E+ A  EEL   +G
Sbjct: 66  EELLSTKVTQELTELIEESMKEVKAYREELEAQLG 100

>APOE_BOVIN (Q03247) Apolipoprotein E precursor (Apo-E)|
          Length = 316

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 122 EELFRTKLVSEIREVEAATRREISAKEEELRQLVG 226
           EEL  T+++ E+  +   T +E+ A +EEL   +G
Sbjct: 66  EELLNTQVIQELTALMEETMKEVKAYKEELEGQLG 100

>SYFA_LACAC (Q5FIY6) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase alpha chain) (PheRS)
          Length = 349

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 137 TKLVSEIREVEAATRREISAKEEELRQL 220
           TK++  +R+V    RRE+  K  ELR L
Sbjct: 42  TKILHSMRDVAPENRREVGQKVNELRDL 69


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,721,650
Number of Sequences: 219361
Number of extensions: 64559
Number of successful extensions: 366
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)