>NKX31_MOUSE (P97436) Homeobox protein Nkx-3.1|
          Length = 237

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 62  NPAHSSAPQSISTPTRSIGGTFCSKSRGIAPESPTAETHT 181
           NP HS  P+  S P     G      RG+APE P +  H+
Sbjct: 52  NPQHSPDPRRDSAPEPDKAG-----GRGVAPEDPPSIRHS 86

>RLUD_PASMU (Q9CKA6) Ribosomal large subunit pseudouridine synthase D (EC|
           5.4.99.-) (rRNA-uridine isomerase D) (rRNA
           pseudouridylate synthase D)
          Length = 324

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
 Frame = -3

Query: 353 KIGVASKRDRVPSGC-------PRQSKGSRRDQRRKITREPSLVAC 237
           + G+  + D+  +G        P Q+K  R  Q+RKITRE   +AC
Sbjct: 130 RAGIVHRLDKDTTGLMVIAKTIPAQTKLVRDLQKRKITREYEAIAC 175

>Y7973_BRAJA (Q89C25) UPF0313 protein blr7973|
          Length = 673

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 25/86 (29%), Positives = 34/86 (39%)
 Frame = -2

Query: 345 SSQQKGSRPFRMPAPVQGQQTRSAEKDHTRTEPRSMRP*AXXXXXXXXXXXXGTRVWVSA 166
           +++QKG+   R+PA  Q +Q + A    +R   R   P                R  V  
Sbjct: 243 ATRQKGATVIRLPALEQVEQDKEAYARASRVLHRESNP-------------GNARPLVQR 289

Query: 165 VGDSGAMPRDLEQKVPPIDLVGVDMD 88
            GD     RDL    PPI L   +MD
Sbjct: 290 HGD-----RDLWLNPPPIPLTSDEMD 310

>TATB_SHEON (Q8E9R3) Sec-independent protein translocase protein tatB homolog|
          Length = 149

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 62  NPAHSSAPQSISTPTRSIGGTFCSKSRGIAPESPTAET 175
           N  H+ A Q++ST   S   +   KS  I  E P + T
Sbjct: 108 NQIHNPASQTVSTEASSTSASSAPKSESIQGEDPRSNT 145

>PAIP1_XENLA (Q7ZYB4) Polyadenylate-binding protein-interacting protein 1|
           (Poly(A)-binding protein-interacting protein 1)
           (PABP-interacting protein 1) (PAIP-1) (Paip1 protein)
           (XlPaip1)
          Length = 463

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 345 SSQQKGSRPFRMPAPVQGQQTRSAEKDHTRTEPRSMRP 232
           S QQ+  RP R   P  G    +A+  H RT P +  P
Sbjct: 50  SQQQEPLRPPRTGPPGGGGDAGAAQTSHKRTSPAAQLP 87


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,248,554
Number of Sequences: 219361
Number of extensions: 504164
Number of successful extensions: 1502
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1502
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)