>NU107_RAT (P52590) Nuclear pore complex protein Nup107 (Nucleoporin Nup107)|
           (107 kDa nucleoporin) (p105)
          Length = 926

 Score = 34.3 bits (77), Expect = 0.072
 Identities = 20/56 (35%), Positives = 26/56 (46%)
 Frame = +1

Query: 235 STTTMTMMIPHYPSRGRQPAGQPPRSRKAHRQISLMLGALKLRPRITRGMGLMALL 402
           +TT  + +IP  PS  RQP   P RS   H  IS + G     PR  +  G +  L
Sbjct: 44  TTTPRSQIIPRTPSSFRQPFTPPSRSLLRHPDISYIFGTEGRSPRHIQSSGYLGNL 99

>NU107_HUMAN (P57740) Nuclear pore complex protein Nup107 (Nucleoporin Nup107)|
           (107 kDa nucleoporin)
          Length = 925

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 20/56 (35%), Positives = 25/56 (44%)
 Frame = +1

Query: 235 STTTMTMMIPHYPSRGRQPAGQPPRSRKAHRQISLMLGALKLRPRITRGMGLMALL 402
           +TT    +IP  PS  RQP     RS      IS +LG     PR+T+  G    L
Sbjct: 44  NTTPRNQVIPRTPSSFRQPFTPTSRSLLRQPDISCILGTGGKSPRLTQSSGFFGNL 99

>CHSA_EMENI (P30584) Chitin synthase A (EC 2.4.1.16) (Chitin-UDP|
           acetyl-glucosaminyl transferase A) (Class-II chitin
           synthase A)
          Length = 1013

 Score = 31.2 bits (69), Expect = 0.61
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 279 RSSTSRPA-PSEQEGASANITYVRSPKAAASNHQRNGINGASR 404
           R + SRPA P+     +    +VR P AAAS ++R  ING+ R
Sbjct: 62  RYTASRPASPARPWSPTRAADWVRPPSAAASYYERADINGSPR 104

>YGY5_YEAST (P53071) Hypothetical 19.3 kDa protein in HAP2-ADE5,6 intergenic|
           region
          Length = 178

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
 Frame = +1

Query: 175 VYSIGHPATAGKQCLLSILHSTTTMTMMIPHYPSRG-----RQPAGQPP-RSRKAHRQIS 336
           ++++G P TAG   L SIL+ T   ++ +P  PSR      R P   PP      H  IS
Sbjct: 45  IWALG-PHTAGPLLLFSILNCTPARSVTLPISPSRASISFTRMPLPTPPIEGLHEHLPIS 103

Query: 337 LMLGALKL 360
           +  G +++
Sbjct: 104 VNDGVMRV 111

>OST2_HUMAN (Q9Y278) Heparan sulfate glucosamine 3-O-sulfotransferase 2 (EC|
           2.8.2.29) (Heparan sulfate D-glucosaminyl
           3-O-sulfotransferase 2) (Heparan sulfate
           3-O-sulfotransferase 2) (h3-OST-2)
          Length = 367

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 291 SRPAPSEQEGASANITYVRSPKAAASNHQRNGINGASRSP 410
           S P PSE    SA    V +P+ + SNH  +   G  R P
Sbjct: 76  SGPTPSEPSAPSAPAAAVPAPRLSGSNHSGSPKLGTKRLP 115

>ANGP1_RAT (O35460) Angiopoietin-1 precursor (ANG-1)|
          Length = 497

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -3

Query: 377 LVIRGRSFR---APNISDICRCAFLLRGGW 297
           L++ G  F    A N + +C+CA +L GGW
Sbjct: 417 LILHGADFSTKDADNDNCMCKCALMLTGGW 446

>ANGP1_CANFA (Q60FC1) Angiopoietin-1 precursor (ANG-1)|
          Length = 497

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -3

Query: 377 LVIRGRSFR---APNISDICRCAFLLRGGW 297
           L++ G  F    A N + +C+CA +L GGW
Sbjct: 417 LILHGADFSTKDADNDNCMCKCALMLTGGW 446

>ANGP1_BOVIN (O18920) Angiopoietin-1 precursor (ANG-1) (Fragment)|
          Length = 481

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -3

Query: 377 LVIRGRSFR---APNISDICRCAFLLRGGW 297
           L++ G  F    A N + +C+CA +L GGW
Sbjct: 417 LILHGADFSTKDADNDNCMCKCALMLTGGW 446

>ANGP1_MOUSE (O08538) Angiopoietin-1 precursor (ANG-1)|
          Length = 498

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -3

Query: 377 LVIRGRSFR---APNISDICRCAFLLRGGW 297
           L++ G  F    A N + +C+CA +L GGW
Sbjct: 418 LILHGADFSTKDADNDNCMCKCALMLTGGW 447

>ANGP1_HUMAN (Q15389) Angiopoietin-1 precursor (ANG-1)|
          Length = 498

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -3

Query: 377 LVIRGRSFR---APNISDICRCAFLLRGGW 297
           L++ G  F    A N + +C+CA +L GGW
Sbjct: 418 LILHGADFSTKDADNDNCMCKCALMLTGGW 447

>YMT6_YEAST (Q04215) Transposon Ty1 protein A|
          Length = 440

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 22/76 (28%), Positives = 33/76 (43%)
 Frame = +3

Query: 180 FHRASRHRGEAMSVVNPPFYXXXXXXXTPLSFKRSSTSRPAPSEQEGASANITYVRSPKA 359
           F R +RHR   M+V +              S +  ST R +PS+++  S   T    PK+
Sbjct: 323 FLRYARHRCIHMTVADLFSDIHSMYEEQQESKRNKSTHRRSPSDEKKDSRTYTNTTKPKS 382

Query: 360 AASNHQRNGINGASRS 407
              N Q+   N  SR+
Sbjct: 383 ITRNSQKPN-NSQSRT 397

>EXON_HHV2 (P06489) Alkaline exonuclease (EC 3.1.11.-)|
          Length = 620

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 175 PIQPHLVACPARRPAGAERG 116
           P+QPHLV    R  AGAE G
Sbjct: 508 PLQPHLVTFLGRHRAGAEEG 527

>DNBI_BFDV (P13893) DNA-binding protein (Agnoprotein)|
          Length = 61

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 8/37 (21%)
 Frame = +1

Query: 208 KQCLLSILHSTTTMTMMIPH--------YPSRGRQPA 294
           +Q LLS+LHS T + +++P          PS  RQPA
Sbjct: 7   RQALLSLLHSLTRLPLLLPPLRLLLLLLLPSPPRQPA 43

>RIN3_MOUSE (P59729) Ras and Rab interactor 3 (Ras interaction/interference|
           protein 3)
          Length = 980

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 259 IPHYPSRGRQPAGQPPRSRKAHRQISLML 345
           IP  P + +QP   PPR ++  RQ++  L
Sbjct: 447 IPVPPGKAKQPPVPPPRKKRVSRQLASTL 475

>BCSC4_ACEXY (Q9WX71) Cellulose synthase 2 operon protein C precursor|
          Length = 1307

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 280  GRQPAGQPPRSRKAHRQISLMLGALKLRPRITRGMGLMALLGRR 411
            G  P G P         I+ ++G L+  PR+TR +GL    GRR
Sbjct: 1052 GSSPLGFP---------ITNVVGGLEFAPRLTRNLGLRISGGRR 1086

>VTS1_NEUCR (Q7RZQ3) Protein VTS1|
          Length = 610

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 17/69 (24%), Positives = 24/69 (34%)
 Frame = +3

Query: 195 RHRGEAMSVVNPPFYXXXXXXXTPLSFKRSSTSRPAPSEQEGASANITYVRSPKAAASNH 374
           RH G   + +N  F        T  +     T  P PS +     N   + +P  +    
Sbjct: 202 RHSGLDQTTINTMFPDAVAAIATEKAKFTQQTGNPPPSNRNSLVDNRNSLAAPTVSGPKD 261

Query: 375 QRNGINGAS 401
             NG N AS
Sbjct: 262 DINGQNPAS 270

>LONH_METJA (Q58812) Putative protease La homolog (EC 3.4.21.-)|
          Length = 649

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
 Frame = +1

Query: 232 HSTTTMTMMIPHYPSRGRQPAGQPPRSR-------KAHRQISLMLGALKLRPRITRGMGL 390
           ++ T +   I H P  GR P G PP  R       +AHR I L +  +K  P   +   L
Sbjct: 198 YNVTRLLGDIKHCPLGGRPPLGTPPHKRIILGAIHEAHRGI-LYVDEIKTMPLEVQDYIL 256

Query: 391 MAL 399
            AL
Sbjct: 257 TAL 259


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,952,066
Number of Sequences: 219361
Number of extensions: 765109
Number of successful extensions: 1895
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1895
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)