ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl09g02 |
|---|---|
| Clone Library Name | barley_pub |
>PRGR_MOUSE (Q00175) Progesterone receptor (PR)| Length = 923 Score = 28.9 bits (63), Expect = 3.2 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = -2 Query: 299 AQASHASLDSDLEAFSHNPAHGSFAPLAFQPSAMTNCVNQR 177 A +S ++L+ L P GSFAPL +P A +C+ R Sbjct: 446 ASSSGSALECILYKAEAPPTQGSFAPLPCKPPAAASCLLPR 486
>SRBP1_RAT (P56720) Sterol regulatory element-binding protein 1 (SREBP-1)| (Sterol regulatory element-binding transcription factor 1) (Adipocyte determination- and differentiation-dependent factor 1) (ADD1) (Fragment) Length = 1024 Score = 28.9 bits (63), Expect = 3.2 Identities = 23/52 (44%), Positives = 28/52 (53%) Frame = -2 Query: 350 TGPGGASAPNVGRGERRAQASHASLDSDLEAFSHNPAHGSFAPLAFQPSAMT 195 TG G S+P G + +S ASL S LEAF P + APL+ PSA T Sbjct: 32 TGDTGPSSP--GASSPESFSSPASLGSSLEAFLGGP-KVTPAPLSPPPSAPT 80
>PTH_NANEQ (P61235) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)| Length = 115 Score = 28.9 bits (63), Expect = 3.2 Identities = 11/26 (42%), Positives = 20/26 (76%) Frame = -2 Query: 323 NVGRGERRAQASHASLDSDLEAFSHN 246 ++G+G+ AQ +HASLD+ L+ + +N Sbjct: 12 DIGKGKLCAQVAHASLDAALKVYRNN 37
>IL17C_HUMAN (Q9P0M4) Interleukin-17C precursor (IL-17C) (Cytokine CX2)| Length = 197 Score = 28.5 bits (62), Expect = 4.2 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = -2 Query: 344 PGGASAPNV-GRGERRAQASHASLDSDLEAFSHNPAHGSFAPLAFQPSAMTNC 189 P G + P++ RG + QA +L S LEA SH H +PSA T C Sbjct: 43 PLGQAPPHLLARGAKWGQALPVALVSSLEAASHRGRHE-------RPSATTQC 88
>BETA_RHILO (Q985M5) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)| Length = 550 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = -2 Query: 338 GASAPNVGRGERRAQASHASLDSDLEAFSHNPAHGSFAP 222 G SA + RG+ + SH D DL+ F + A ++ P Sbjct: 429 GQSAFDAFRGQEISPGSHVQSDDDLDVFIRDHAESAYHP 467
>GOG8A_HUMAN (Q9NZW0) Golgin subfamily A member 8A/B (Golgi autoantigen| golgin-67) (88 kDa Golgi protein) (Gm88 autoantigen) Length = 460 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/47 (31%), Positives = 21/47 (44%) Frame = -2 Query: 341 GGASAPNVGRGERRAQASHASLDSDLEAFSHNPAHGSFAPLAFQPSA 201 GG G+G +A+ A+ D S+N HG F A P+A Sbjct: 328 GGHHQAGPGQGGEEGEAAGAAGDGVAACGSYNEGHGKFLAAAQNPAA 374
>DHR15_WHEAT (Q00742) Dehydrin Rab15| Length = 149 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/29 (41%), Positives = 14/29 (48%) Frame = -2 Query: 362 LAHGTGPGGASAPNVGRGERRAQASHASL 276 +A GTG GGA P G G Q H + Sbjct: 96 MATGTGTGGAYGPGTGTGGAYGQQGHTGM 124
>INP5E_HUMAN (Q9NRR6) 72 kDa inositol polyphosphate 5-phosphatase (EC 3.1.3.36)| (Phosphatidylinositol-4,5-bisphosphate 5-phosphatase) (Phosphatidylinositol polyphosphate 5-phosphatase type IV) Length = 644 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +1 Query: 253 LNASKSESKLACDACARRSPRPTLGALAP 339 L + S LACD C+ RS + + LAP Sbjct: 234 LGPGRPRSPLACDDCSLRSAKSSFSLLAP 262
>PRGR_RAT (Q63449) Progesterone receptor (PR)| Length = 923 Score = 27.7 bits (60), Expect = 7.2 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Frame = -2 Query: 344 PGGASAPNVGRGERRAQASHASLDSDL-EAFSHNPAHGSFAPLAFQPSAMTNCVNQR 177 PG A+ +S ++L+ L +A P GSFAPL +P A ++C+ R Sbjct: 430 PGEAAVAAPSAAVSPVSSSGSALECILYKAEGAPPTQGSFAPLPCKPPAASSCLLPR 486
>UCRQ_YEAST (P08525) Ubiquinol-cytochrome c reductase complex| ubiquinone-binding protein QP-C (EC 1.10.2.2) (Ubiquinol-cytochrome c reductase complex 11 kDa protein) (Complex III subunit VIII) Length = 94 Score = 27.7 bits (60), Expect = 7.2 Identities = 9/23 (39%), Positives = 13/23 (56%) Frame = -2 Query: 80 YWWVNNPTLGEFCFTMIGRADIE 12 YWW N EF ++ GR ++E Sbjct: 68 YWWKNGNEYNEFLYSKAGREELE 90
>PLCB3_MOUSE (P51432) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| beta 3 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (Phospholipase C-beta-3) (PLC-beta-3) Length = 1234 Score = 27.7 bits (60), Expect = 7.2 Identities = 19/65 (29%), Positives = 28/65 (43%) Frame = +3 Query: 165 VREEPLIHTIGHRAWLKSQWREATVCRIMTERL*VRIQASMRRLRPPLAPTHVRGACAPR 344 V PL H+A +K + R+ R + ++ + A RRL LA G C P Sbjct: 950 VTPTPLEELRSHKAMVKLRSRQDRDLRELHKKHQRKAVALTRRLLDGLAQARAEGKCRPS 1009 Query: 345 ARAMG 359 A+G Sbjct: 1010 PSALG 1014
>RTP3_MOUSE (Q5QGU6) Receptor-transporting protein 3 (Transmembrane protein 7)| Length = 474 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 3/36 (8%) Frame = +1 Query: 256 NASKSESKLACDACARRSPRPT---LGALAPPGPVP 354 N +K++ K++C + +PR T L ++PP P P Sbjct: 287 NPTKNDPKISCTSKPSTTPRLTIQQLSVVSPPAPAP 322
>TRMD_RHIME (Q92L41) tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.31)| (M1G-methyltransferase) (tRNA [GM37] methyltransferase) Length = 240 Score = 27.3 bits (59), Expect = 9.4 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = +3 Query: 171 EEPLIHTIGHRAWLKSQWREATVCRIMTERL*VRIQASMRRLRPPLAP 314 E P + T G+ A + +QWREAT R+ ER ++ + R P P Sbjct: 191 EIPAVLTSGNHAAV-AQWREATARRLTAERRPDLLERARHPKRDPPQP 237
>XYLD_RHILO (Q98D10) Putative D-xylulose reductase (EC 1.1.1.9) (Xylitol| dehydrogenase) (XDH) Length = 348 Score = 27.3 bits (59), Expect = 9.4 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = -2 Query: 281 SLDSDLEAFSHNPAHGSFAPLAFQPSAMT 195 ++D D+ ++ P HG AP A P+A T Sbjct: 105 NVDPDVSFWATPPVHGVLAPYAVHPAAFT 133 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,332,656 Number of Sequences: 219361 Number of extensions: 838894 Number of successful extensions: 2796 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2695 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2796 length of database: 80,573,946 effective HSP length: 96 effective length of database: 59,515,290 effective search space used: 1428366960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
