ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl09g01 |
|---|---|
| Clone Library Name | barley_pub |
>K125_ARATH (P82266) Probable 125 kDa kinesin-related protein| Length = 1056 Score = 79.7 bits (195), Expect = 2e-15 Identities = 38/42 (90%), Positives = 39/42 (92%) Frame = +3 Query: 165 SRLDKEKSVNVQVLLRCRPFSDDELRSNAPQVVTCNDYQREV 290 SR DKEK VNVQVLLRCRPFSDDELRSNAPQV+TCND QREV Sbjct: 3 SRHDKEKGVNVQVLLRCRPFSDDELRSNAPQVLTCNDLQREV 44
>K125_TOBAC (O23826) 125 kDa kinesin-related protein| Length = 1006 Score = 76.6 bits (187), Expect = 1e-14 Identities = 35/39 (89%), Positives = 38/39 (97%) Frame = +3 Query: 174 DKEKSVNVQVLLRCRPFSDDELRSNAPQVVTCNDYQREV 290 +KEK VNVQVLLRCRPFS+DELR+NAPQVVTCNDYQREV Sbjct: 3 NKEKGVNVQVLLRCRPFSNDELRNNAPQVVTCNDYQREV 41
>KIF11_HUMAN (P52732) Kinesin-like protein KIF11 (Kinesin-related motor protein| Eg5) (Kinesin-like spindle protein HKSP) (Thyroid receptor-interacting protein 5) (TRIP5) (Kinesin-like protein 1) Length = 1057 Score = 39.7 bits (91), Expect = 0.002 Identities = 16/38 (42%), Positives = 28/38 (73%) Frame = +3 Query: 177 KEKSVNVQVLLRCRPFSDDELRSNAPQVVTCNDYQREV 290 +EK N+QV++RCRPF+ E +++A +V C+ ++EV Sbjct: 13 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEV 50
>EG51_XENLA (P28025) Kinesin-related motor protein Eg5 1| Length = 1060 Score = 38.5 bits (88), Expect = 0.004 Identities = 15/43 (34%), Positives = 30/43 (69%) Frame = +3 Query: 162 MSRLDKEKSVNVQVLLRCRPFSDDELRSNAPQVVTCNDYQREV 290 M+ ++K N+QV++RCRPF+ E ++++ V+ C+ ++EV Sbjct: 1 MASKKEDKGKNIQVVVRCRPFNQLERKASSHSVLECDSQRKEV 43
>EG52_XENLA (Q91783) Kinesin-related motor protein Eg5 2| Length = 1067 Score = 38.5 bits (88), Expect = 0.004 Identities = 16/43 (37%), Positives = 28/43 (65%) Frame = +3 Query: 162 MSRLDKEKSVNVQVLLRCRPFSDDELRSNAPQVVTCNDYQREV 290 MS +K N+QV++RCRPF+ E ++++ V+ C ++EV Sbjct: 8 MSSKKDDKGKNIQVVVRCRPFNQLERKASSHSVLECESQRKEV 50
>CMGA_PIG (P04404) Chromogranin A precursor (CgA) [Contains: Pancreastatin;| Parastatin; WE-14] (Fragment) Length = 446 Score = 31.2 bits (69), Expect = 0.71 Identities = 23/75 (30%), Positives = 25/75 (33%), Gaps = 4/75 (5%) Frame = +2 Query: 50 QTPSHRPA----PLRKFPNPPRRTEEREGFRNLPGXXXXXXHVAAGQGEVGERPGPSPLQ 217 QTP A PL P+ R PG H QG V GPS Q Sbjct: 164 QTPGEEEAASTHPLASLPSKKR-----------PGAQAEEDHEGPSQGPVDREKGPSAEQ 212 Query: 218 AVQRRRTPEQRAAGG 262 Q R E+ A G Sbjct: 213 GPQAEREEEEEAEAG 227
>HCN4_HUMAN (Q9Y3Q4) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 Length = 1203 Score = 30.4 bits (67), Expect = 1.2 Identities = 20/62 (32%), Positives = 21/62 (33%) Frame = +2 Query: 56 PSHRPAPLRKFPNPPRRTEEREGFRNLPGXXXXXXHVAAGQGEVGERPGPSPLQAVQRRR 235 P H P P R FP+ P R G LP P P Q QRR Sbjct: 1028 PGHSPGPPRTFPSAPPRASGSHGSLLLPPAS-----------------SPPPPQVPQRRG 1070 Query: 236 TP 241 TP Sbjct: 1071 TP 1072
>HCN4_RAT (Q9JKA7) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 Length = 1198 Score = 30.4 bits (67), Expect = 1.2 Identities = 20/62 (32%), Positives = 21/62 (33%) Frame = +2 Query: 56 PSHRPAPLRKFPNPPRRTEEREGFRNLPGXXXXXXHVAAGQGEVGERPGPSPLQAVQRRR 235 P H P P R FP+ P R G LP P P Q QRR Sbjct: 1026 PGHSPGPPRTFPSAPPRASGSHGSLLLPPAS-----------------SPPPPQVPQRRG 1068 Query: 236 TP 241 TP Sbjct: 1069 TP 1070
>HCN4_MOUSE (O70507) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Brain cyclic nucleotide gated channel 3) (BCNG-3) Length = 1186 Score = 30.4 bits (67), Expect = 1.2 Identities = 20/62 (32%), Positives = 21/62 (33%) Frame = +2 Query: 56 PSHRPAPLRKFPNPPRRTEEREGFRNLPGXXXXXXHVAAGQGEVGERPGPSPLQAVQRRR 235 P H P P R FP+ P R G LP P P Q QRR Sbjct: 1013 PGHSPGPPRTFPSAPPRASGSHGSLLLPPAS-----------------SPPPPQVPQRRG 1055 Query: 236 TP 241 TP Sbjct: 1056 TP 1057
>FGD1_HUMAN (P98174) FYVE, RhoGEF and PH domain-containing protein 1| (Faciogenital dysplasia 1 protein) (Zinc finger FYVE domain-containing protein 3) (Rho/Rac guanine nucleotide exchange factor FGD1) (Rho/Rac GEF) Length = 961 Score = 30.0 bits (66), Expect = 1.6 Identities = 10/31 (32%), Positives = 19/31 (61%) Frame = +2 Query: 47 SQTPSHRPAPLRKFPNPPRRTEEREGFRNLP 139 ++TPS RP+PL++ P P + + + +P Sbjct: 141 TETPSQRPSPLKRAPGPKPQVPPKPSYLQMP 171
>IF2_PROAC (Q6A7M5) Translation initiation factor IF-2| Length = 964 Score = 30.0 bits (66), Expect = 1.6 Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 1/78 (1%) Frame = +2 Query: 32 IPHILSQTPSHRPAPLRKFPNPPRRTEEREG-FRNLPGXXXXXXHVAAGQGEVGERPGPS 208 +P + P +P K P P R R G LP AG+ RPG + Sbjct: 156 VPKPHAPAPKPKPGAPSKSPKPGARPGPRPGGSAGLPSAARPGPRPGAGRRTGAPRPGNN 215 Query: 209 PLQAVQRRRTPEQRAAGG 262 P + Q R+ GG Sbjct: 216 PFASSQGMGQSRHRSEGG 233
>ATX7_HUMAN (O15265) Ataxin-7 (Spinocerebellar ataxia type 7 protein)| Length = 892 Score = 30.0 bits (66), Expect = 1.6 Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Frame = +2 Query: 50 QTPSHRPAPLRKFPNPPRRTEEREGFRNLPGXXXXXXHVAAGQGEVGE-RPGPSP 211 Q P +P + P PPRRT +G PG AA VGE RP PSP Sbjct: 39 QPPPPQPQRQQHPPPPPRRTRPEDGG---PGAASTS---AAAMATVGERRPLPSP 87
>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Hyperpolarization-activated cation channel 4) (HAC-4) Length = 1175 Score = 29.6 bits (65), Expect = 2.1 Identities = 20/62 (32%), Positives = 21/62 (33%) Frame = +2 Query: 56 PSHRPAPLRKFPNPPRRTEEREGFRNLPGXXXXXXHVAAGQGEVGERPGPSPLQAVQRRR 235 P H P R FP+ P R G LP P P P A QRR Sbjct: 1009 PGHSPGTPRTFPSAPPRASGSHGSLLLP--------------PASSPPPPPPPPAPQRRA 1054 Query: 236 TP 241 TP Sbjct: 1055 TP 1056
>ISPDF_CAUCR (Q9A7I5) IspD/ispF bifunctional enzyme [Includes:| 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60) (4-diphosphocytidyl-2C-methyl-D-erythritol synthase) (MEP cytidylyltransferase) (MCT); 2-C-methyl-D-erythritol 2,4-cyclod Length = 382 Score = 29.6 bits (65), Expect = 2.1 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = +2 Query: 98 PRRTEEREGFRNLPGXXXXXXHVAAGQGEVGERPGPSPL 214 PR E +G+R+ G V AG + ERPG P+ Sbjct: 61 PRMLEGLQGWRSTLGGATRALSVQAGLAALSERPGAEPV 99
>KLP68_DROME (P46867) Kinesin-like protein KLP68D| Length = 784 Score = 29.3 bits (64), Expect = 2.7 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = +3 Query: 195 VQVLLRCRPFSDDELRSNAPQVV 263 VQV++RCRP S+ E +P+VV Sbjct: 20 VQVVVRCRPMSNRERSERSPEVV 42
>SPT5_YEAST (P27692) Transcription elongation factor SPT5 (Chromatin elongation| factor SPT5) Length = 1063 Score = 29.3 bits (64), Expect = 2.7 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%) Frame = -3 Query: 106 AAWGIR---KLSQWSGAVAWGLGENVGNSKFWESG 11 +AWG + S W GA AWG + G + W SG Sbjct: 958 SAWGGQGTGATSTWGGASAWGNKSSWGGASTWASG 992
>RPC5_SCHPO (O94616) DNA-directed RNA polymerases I and III 40 kDa polypeptide| (EC 2.7.7.6) (AC40) Length = 348 Score = 28.5 bits (62), Expect = 4.6 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = -2 Query: 269 AGDHLRRVAPEFVVAE-RPAAEKDLDVHRLLLVQPRHXXXXXXXXGDFEIPP 117 A + +R V P+ VVA+ RP E DL+ H +L + H + + P Sbjct: 187 ADNPIRVVNPDIVVAKLRPGQEIDLEAHAILGIGQDHAKFSPVATASYRLLP 238
>AGO2_DROME (Q9VUQ5) Argonaute 2 protein| Length = 1214 Score = 28.5 bits (62), Expect = 4.6 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Frame = +3 Query: 48 PKPQA--TAPLHCESFRIPHAAPRNGRDFEISQXXXXXXXMSRLDKEKSVNVQVLLRCRP 221 PKP+A A L+C+ PR+GR +Q + K ++++ + RP Sbjct: 812 PKPKAHKCAVLYCD--------PRSGRKMNYTQLNDFGNLIISQGKAVNISLDSDVTYRP 863 Query: 222 FSDDE 236 F+DDE Sbjct: 864 FTDDE 868
>MAK5_EMENI (Q5BCI0) ATP-dependent RNA helicase mak5 (EC 3.6.1.-)| Length = 770 Score = 28.5 bits (62), Expect = 4.6 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -2 Query: 230 VAERPAAEKDLDVHRLLLVQPRH 162 + E PA EKDL ++ LLL P+H Sbjct: 478 IVECPAMEKDLYLYTLLLYHPKH 500
>DNAJ_RHITR (Q93S23) Chaperone protein dnaJ (Fragment)| Length = 331 Score = 28.5 bits (62), Expect = 4.6 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Frame = +2 Query: 68 PAPLRKFPNPPRRTEEREGFRNLPGXXXXXXHVAA-GQGEVGERPGPS 208 P P K R TEER N+P + G+GE G R GPS Sbjct: 180 PDPCTKCHGQGRVTEERSLSVNIPAGIEDGTRIRLQGEGEAGLRGGPS 227
>CHM4B_CHICK (Q5ZHP5) Charged multivesicular body protein 4b| (Chromatin-modifying protein 4b) (CHMP4b) Length = 227 Score = 28.5 bits (62), Expect = 4.6 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +2 Query: 170 AGQGEVGERPGPSPLQAVQRRRTPEQ 247 AG G G GPSP +A+QR R E+ Sbjct: 11 AGAGGKGAGKGPSPQEAIQRLRDTEE 36
>STE50_YEAST (P25344) Protein STE50| Length = 346 Score = 28.5 bits (62), Expect = 4.6 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 3/69 (4%) Frame = +2 Query: 50 QTPSHRPAPLRKFPNPP---RRTEEREGFRNLPGXXXXXXHVAAGQGEVGERPGPSPLQA 220 Q+PS R +P+ F P ++ ++ +P H +A PGPSP +A Sbjct: 195 QSPSRRESPVTVFRQPSLSHSKSLHKDSKNKVPQISTNQSHPSAVS--TANTPGPSPNEA 252 Query: 221 VQRRRTPEQ 247 +++ R ++ Sbjct: 253 LKQLRASKE 261
>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich| glycoprotein) Length = 620 Score = 28.1 bits (61), Expect = 6.0 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +2 Query: 56 PSHRPAPLRKFPNPPRR 106 P+H+P+PLR P PRR Sbjct: 242 PTHQPSPLRHLPPSPRR 258
>RASL1_MOUSE (Q9Z268) RasGAP-activating-like protein 1| Length = 799 Score = 28.1 bits (61), Expect = 6.0 Identities = 14/46 (30%), Positives = 20/46 (43%) Frame = -3 Query: 253 GALLRSSSSLNGLQRRRTWTFTDFSLSSRDMXXXXXXAWEISKSLP 116 G LL+ GL R + F LS RD+ W++ S+P Sbjct: 570 GFLLKRKEEPGGLATRFAFKKRYFRLSGRDLSYSKTPEWQVHTSIP 615
>NETR_SAGLB (Q5G265) Neurotrypsin precursor (EC 3.4.21.-)| Length = 875 Score = 28.1 bits (61), Expect = 6.0 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 4/38 (10%) Frame = +2 Query: 2 HSAATFPKF*IPHILSQTPSHR----PAPLRKFPNPPR 103 H + P PH L HR P PL +FP PPR Sbjct: 33 HRHSPPPGLLYPHYLPTEQRHRRTRPPPPLPRFPRPPR 70
>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2161 Score = 28.1 bits (61), Expect = 6.0 Identities = 20/75 (26%), Positives = 31/75 (41%) Frame = +2 Query: 56 PSHRPAPLRKFPNPPRRTEEREGFRNLPGXXXXXXHVAAGQGEVGERPGPSPLQAVQRRR 235 P R P++K P PP + +E PG E + P P L+ + + Sbjct: 949 PPRRAGPIKK-PPPPVKADELPPKSLEPGD------------ETPKAPKPDALKTAKGKV 995 Query: 236 TPEQRAAGGHLQRLP 280 P++ AGG+L P Sbjct: 996 GPKETPAGGNLSPAP 1010
>K0319_HUMAN (Q5VV43) Protein KIAA0319 precursor| Length = 1072 Score = 27.7 bits (60), Expect = 7.8 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = -3 Query: 136 EISKSLPFLGAAWGIRKLSQWS 71 +I K L FLG WG+ ++S++S Sbjct: 136 DIRKDLTFLGKDWGLEEMSEYS 157
>CIN8_ASHGO (Q8J1G7) Kinesin-like protein CIN8| Length = 945 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/34 (32%), Positives = 22/34 (64%) Frame = +3 Query: 174 DKEKSVNVQVLLRCRPFSDDELRSNAPQVVTCND 275 D ++ +N+ V +RCR ++ E+++ + VVT D Sbjct: 16 DAQEELNITVAVRCRGRNEREIKAKSSVVVTVPD 49
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 27.7 bits (60), Expect = 7.8 Identities = 16/53 (30%), Positives = 19/53 (35%) Frame = +2 Query: 53 TPSHRPAPLRKFPNPPRRTEEREGFRNLPGXXXXXXHVAAGQGEVGERPGPSP 211 TP+ PA P PP + G P AG G +PGP P Sbjct: 144 TPTPPPAVPSTAPGPPPPSTPSSGVSTTPPQTGGPPPPPAGGAGPGPKPGPGP 196
>PYGO_DROME (Q9V9W8) Protein pygopus (Protein gammy legs)| Length = 815 Score = 23.9 bits (50), Expect(2) = 9.4 Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 7/71 (9%) Frame = +2 Query: 56 PSHRPAPLRK--FPNPPRRTEEREGF-----RNLPGXXXXXXHVAAGQGEVGERPGPSPL 214 P+ P+PL+ PN P + +P G G G PGP P Sbjct: 501 PNSGPSPLQSPAGPNGPNNNNSNNNNGPMMGQMIPNAVPMQHQQHMGGGPPGHGPGPMPG 560 Query: 215 QAVQRRRTPEQ 247 + + P+Q Sbjct: 561 MGMNQMLPPQQ 571 Score = 21.9 bits (45), Expect(2) = 9.4 Identities = 10/25 (40%), Positives = 12/25 (48%) Frame = +3 Query: 3 TRRPLSQNFEFPTFSPKPQATAPLH 77 T S + PT SP P A +P H Sbjct: 465 TSTATSMSTSVPTSSPAPPAMSPHH 489 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.311 0.126 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,765,243 Number of Sequences: 219361 Number of extensions: 876244 Number of successful extensions: 2246 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 2161 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2242 length of database: 80,573,946 effective HSP length: 72 effective length of database: 64,779,954 effective search space used: 1554718896 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits)
