Clone Name | bastl09f09 |
---|---|
Clone Library Name | barley_pub |
>IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit p82-34| (eIF-(iso)4F p82-34) Length = 788 Score = 106 bits (264), Expect = 2e-23 Identities = 54/70 (77%), Positives = 56/70 (80%) Frame = +3 Query: 159 MTTDQPVISLXXXXXXXXXXXXXLFAPAFAVAASGSGDFLRPHGGGASGVSRIGDLHFET 338 MTTDQPVISL LFAPAFAVAASGSGDFLRPHGGGASGVSRIGDLH E+ Sbjct: 1 MTTDQPVISLRPGGGGGGPRGGRLFAPAFAVAASGSGDFLRPHGGGASGVSRIGDLHSES 60 Query: 339 RERIRYSRDQ 368 RER+RYSRDQ Sbjct: 61 RERVRYSRDQ 70
>CNTRB_HUMAN (Q8N137) Centrobin (LYST-interacting protein 8)| Length = 903 Score = 28.9 bits (63), Expect = 3.2 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 4/42 (9%) Frame = +2 Query: 8 ERGRRRNPTLPQE----KKVKKKLGFLRDFLPGAPPIPCRSS 121 E+ RR T+P K V ++ RD LPGAPP+ C SS Sbjct: 593 EKEERRVWTMPPMAVALKPVLQQSREARDELPGAPPVLCSSS 634
>FOXN1_HUMAN (O15353) Forkhead box protein N1 (Transcription factor winged-helix| nude) Length = 648 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/34 (38%), Positives = 16/34 (47%) Frame = +3 Query: 237 PAFAVAASGSGDFLRPHGGGASGVSRIGDLHFET 338 P SG+GD P GG+ +GDLH T Sbjct: 585 PCLTETGSGAGDLAAPGSGGSGA---LGDLHLTT 615
>PIN3A_ORYSA (Q5VP70) Probable auxin efflux carrier component 3a (OsPIN3a)| Length = 618 Score = 27.7 bits (60), Expect = 7.1 Identities = 11/18 (61%), Positives = 15/18 (83%) Frame = -3 Query: 177 LAGLSSWLRVPNPTKAPR 124 LAGL++W R+P+ T APR Sbjct: 83 LAGLAAWSRLPSRTGAPR 100
>HRG_RABIT (Q28640) Histidine-rich glycoprotein precursor| (Histidine-proline-rich glycoprotein) (HPRG) (Fragment) Length = 526 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Frame = -3 Query: 147 PNPTKAPRQLDRQGIGGAPGRKSRRNPSFFFTFFSWGRVG--FRLRPL 10 P+ + P+ L + +G P +R P F W R+G ++L PL Sbjct: 418 PSHKEGPQDLHQHAMGPPPKHPGKRGPGKGHFPFHWRRIGSVYQLPPL 465
>RLPA_PSEAE (Q9X6V6) RlpA-like lipoprotein precursor| Length = 342 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 4/33 (12%) Frame = +3 Query: 237 PAFAVAASGSGDFLRPHGGGAS----GVSRIGD 323 PA SG GD+ RPH GA VSRI D Sbjct: 35 PARQAGISGPGDYSRPHRDGAPWWDVDVSRIPD 67 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,340,810 Number of Sequences: 219361 Number of extensions: 551393 Number of successful extensions: 2442 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 2320 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2442 length of database: 80,573,946 effective HSP length: 98 effective length of database: 59,076,568 effective search space used: 1417837632 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)