ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl09f09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit ... 106 2e-23
2CNTRB_HUMAN (Q8N137) Centrobin (LYST-interacting protein 8) 29 3.2
3FOXN1_HUMAN (O15353) Forkhead box protein N1 (Transcription fact... 28 7.1
4PIN3A_ORYSA (Q5VP70) Probable auxin efflux carrier component 3a ... 28 7.1
5HRG_RABIT (Q28640) Histidine-rich glycoprotein precursor (Histid... 27 9.3
6RLPA_PSEAE (Q9X6V6) RlpA-like lipoprotein precursor 27 9.3

>IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit p82-34|
           (eIF-(iso)4F p82-34)
          Length = 788

 Score =  106 bits (264), Expect = 2e-23
 Identities = 54/70 (77%), Positives = 56/70 (80%)
 Frame = +3

Query: 159 MTTDQPVISLXXXXXXXXXXXXXLFAPAFAVAASGSGDFLRPHGGGASGVSRIGDLHFET 338
           MTTDQPVISL             LFAPAFAVAASGSGDFLRPHGGGASGVSRIGDLH E+
Sbjct: 1   MTTDQPVISLRPGGGGGGPRGGRLFAPAFAVAASGSGDFLRPHGGGASGVSRIGDLHSES 60

Query: 339 RERIRYSRDQ 368
           RER+RYSRDQ
Sbjct: 61  RERVRYSRDQ 70



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>CNTRB_HUMAN (Q8N137) Centrobin (LYST-interacting protein 8)|
          Length = 903

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = +2

Query: 8   ERGRRRNPTLPQE----KKVKKKLGFLRDFLPGAPPIPCRSS 121
           E+  RR  T+P      K V ++    RD LPGAPP+ C SS
Sbjct: 593 EKEERRVWTMPPMAVALKPVLQQSREARDELPGAPPVLCSSS 634



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>FOXN1_HUMAN (O15353) Forkhead box protein N1 (Transcription factor winged-helix|
           nude)
          Length = 648

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 237 PAFAVAASGSGDFLRPHGGGASGVSRIGDLHFET 338
           P      SG+GD   P  GG+     +GDLH  T
Sbjct: 585 PCLTETGSGAGDLAAPGSGGSGA---LGDLHLTT 615



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>PIN3A_ORYSA (Q5VP70) Probable auxin efflux carrier component 3a (OsPIN3a)|
          Length = 618

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -3

Query: 177 LAGLSSWLRVPNPTKAPR 124
           LAGL++W R+P+ T APR
Sbjct: 83  LAGLAAWSRLPSRTGAPR 100



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>HRG_RABIT (Q28640) Histidine-rich glycoprotein precursor|
           (Histidine-proline-rich glycoprotein) (HPRG) (Fragment)
          Length = 526

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -3

Query: 147 PNPTKAPRQLDRQGIGGAPGRKSRRNPSFFFTFFSWGRVG--FRLRPL 10
           P+  + P+ L +  +G  P    +R P      F W R+G  ++L PL
Sbjct: 418 PSHKEGPQDLHQHAMGPPPKHPGKRGPGKGHFPFHWRRIGSVYQLPPL 465



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>RLPA_PSEAE (Q9X6V6) RlpA-like lipoprotein precursor|
          Length = 342

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
 Frame = +3

Query: 237 PAFAVAASGSGDFLRPHGGGAS----GVSRIGD 323
           PA     SG GD+ RPH  GA      VSRI D
Sbjct: 35  PARQAGISGPGDYSRPHRDGAPWWDVDVSRIPD 67


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,340,810
Number of Sequences: 219361
Number of extensions: 551393
Number of successful extensions: 2442
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2442
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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