ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl09f07 |
|---|---|
| Clone Library Name | barley_pub |
>SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (Suppressor of| white-apricot homolog 2) Length = 659 Score = 34.3 bits (77), Expect = 0.076 Identities = 18/52 (34%), Positives = 25/52 (48%) Frame = +1 Query: 205 PNPARRRERGRNHSPRPPPAESLAARPHVFIPRLGRRCAERERSGGAELSLA 360 P+ +R R R R+ SP P PA RP P +G + + E + G E A Sbjct: 503 PSQSRSRSRSRSQSPSPSPAREKLTRP-AASPAVGEKLKKTEPAAGKETGAA 553
>CWC22_CRYNE (Q5KFX4) Pre-mRNA-splicing factor CWC22| Length = 831 Score = 30.8 bits (68), Expect = 0.84 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = +1 Query: 166 RGRISANQPQFLLPNPARRRERGRNHSPRPPPAESLAARPHVFIPRLGRRCAERERS 336 R R +++P+ P P RRR + SP PPP + P RR A+ RS Sbjct: 735 RRRQYSDEPRSPSPPPRRRRYSDDSRSPSPPPRRRYSGDSRSPSPPPRRRYADDSRS 791
>OLIG1_MOUSE (Q9JKN5) Oligodendrocyte transcription factor 1 (Oligo1)| (Oligodendrocyte-specific bHLH transcription factor 1) Length = 260 Score = 29.3 bits (64), Expect = 2.4 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Frame = +1 Query: 178 SANQPQFLLPNPARRRERGRNHSPRPPPAESLAARPHV----FIPRLGRRCAERERSGGA 345 S++ LLP PAR + PR P ES AR +L R+ RER Sbjct: 49 SSSSTASLLPKPAREKAEAPLAEPRGPAPESGGARADAKEEQQQQQLRRKINSRERKRMQ 108 Query: 346 ELSLAV 363 +L+LA+ Sbjct: 109 DLNLAM 114
>MPA5A_LOLPR (Q40240) Major pollen allergen Lol p 5a precursor (Lol p Va) (Lol p| Ib) Length = 308 Score = 29.3 bits (64), Expect = 2.4 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 4/51 (7%) Frame = +1 Query: 166 RGRISANQPQFLLPNPARR--RERGRNHSPRPPPAES--LAARPHVFIPRL 306 R R+++ QP LP P RR R SP PP A S AA+ IP+L Sbjct: 63 RQRLASRQPWPPLPTPLRRTSSRSSRPPSPSPPRASSPTSAAKAPGLIPKL 113
>OLIG1_RAT (Q9WUQ3) Oligodendrocyte transcription factor 1 (Oligo1) (Olg-1| bHLH protein) Length = 261 Score = 29.3 bits (64), Expect = 2.4 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Frame = +1 Query: 178 SANQPQFLLPNPARRRERGRNHSPRPPPAESLAARPHV----FIPRLGRRCAERERSGGA 345 S++ LLP PAR + PR P ES AR +L R+ RER Sbjct: 50 SSSSTASLLPKPAREKPEAPLAEPRGPAPESGGARADAKEEQQQQQLRRKINSRERKRMQ 109 Query: 346 ELSLAV 363 +L+LA+ Sbjct: 110 DLNLAM 115
>IER2_RAT (Q6P7D3) Immediate early response gene 2 protein| Length = 221 Score = 28.9 bits (63), Expect = 3.2 Identities = 17/43 (39%), Positives = 22/43 (51%) Frame = +1 Query: 172 RISANQPQFLLPNPARRRERGRNHSPRPPPAESLAARPHVFIP 300 ++ +QP+F P+RR R H PR P A AA P V P Sbjct: 51 KVETHQPEF---PPSRRALDPRLHPPREPEAAMEAATPDVEQP 90
>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2424 Score = 28.9 bits (63), Expect = 3.2 Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 5/62 (8%) Frame = +1 Query: 169 GRISANQPQFLLPN-PAR---RRERGRNHSPRPPPAESLAARPH-VFIPRLGRRCAERER 333 G + P+ LP PAR R RG SP PPP LA R H PR G + R Sbjct: 2342 GPRTGQAPRARLPQKPARSVQRERRGLVLSPPPPPPGELAPRAHPARTPRPGPGDSRSRR 2401 Query: 334 SG 339 G Sbjct: 2402 GG 2403
>TAU_MOUSE (P10637) Microtubule-associated protein tau (Neurofibrillary tangle| protein) (Paired helical filament-tau) (PHF-tau) Length = 732 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +1 Query: 223 RERGRNHSPRPPPAESLAARPHVFIPRLGRRCAERERSGGAE 348 +E P PA L RP +P+L R A ++R+G E Sbjct: 321 KEASLQEPPGKQPAAGLPGRPVSRVPQLKARVASKDRTGNDE 362
>HOXL_AZOVI (P40592) Hydrogenase expression/formation protein hoxL| Length = 106 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/37 (32%), Positives = 19/37 (51%) Frame = -1 Query: 134 GEEWSGEDGGAAWVT*QLLGHVNTGRWMLSFLDPASQ 24 G G++ G W+ +L+ G W+L FLD A + Sbjct: 15 GRALCGDENGVRWIDTRLVEPPAPGDWLLVFLDAARE 51
>IF2_BURPS (Q63TP8) Translation initiation factor IF-2| Length = 975 Score = 28.1 bits (61), Expect = 5.5 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Frame = +1 Query: 163 RRGRISANQPQFLLPNPARR--RERGRNHSPRPPPAESLAARPHVFIPRLG 309 RR ++ A +P PA + +G H P P E+ AARP P G Sbjct: 270 RRAQVKAVEPPKPAEPPAAKAAEAKGTLHKPAKPAGEAAAARPAAKKPASG 320
>IF2_BURP1 (Q3JSY9) Translation initiation factor IF-2| Length = 975 Score = 28.1 bits (61), Expect = 5.5 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Frame = +1 Query: 163 RRGRISANQPQFLLPNPARR--RERGRNHSPRPPPAESLAARPHVFIPRLG 309 RR ++ A +P PA + +G H P P E+ AARP P G Sbjct: 270 RRAQVKAVEPPKPAEPPAAKAAEAKGTLHKPAKPAGEAAAARPAAKKPASG 320
>IF2_BURMA (Q62KK9) Translation initiation factor IF-2| Length = 975 Score = 28.1 bits (61), Expect = 5.5 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Frame = +1 Query: 163 RRGRISANQPQFLLPNPARR--RERGRNHSPRPPPAESLAARPHVFIPRLG 309 RR ++ A +P PA + +G H P P E+ AARP P G Sbjct: 270 RRAQVKAVEPPKPAEPPAAKAAEAKGTLHKPAKPAGEAAAARPAAKKPASG 320
>ATG13_ASPFU (Q4WHN5) Autophagy-related protein 13| Length = 958 Score = 28.1 bits (61), Expect = 5.5 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Frame = +1 Query: 160 TRRGRISANQPQFLLPNPARRRERGRNHS--PRPPPAESLAARPHVFIPRLGRRCAERER 333 ++R S++Q LP+PA+R R + + P S +A +++ PRLG+ + Sbjct: 779 SQRASSSSDQGPTALPSPAKRETRSQGDATVSGQTPELSSSANHNLYQPRLGQFRSRGSF 838 Query: 334 SGGAELS 354 G LS Sbjct: 839 GGAHSLS 845
>TFDB_COMAC (Q8KN28) 2,4-dichlorophenol 6-monooxygenase (EC 1.14.13.20)| (2,4-dichlorophenol hydroxylase) (2,4-DCP hydroxylase) Length = 586 Score = 27.7 bits (60), Expect = 7.1 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = +1 Query: 205 PNPARRRERGRNHSPRPPPAESLAARPHVFIPRLGRRCAERERSGGAELSL 357 P+P RR+ H+ P A PHV++ R GRR + + G SL Sbjct: 451 PDPGFRRDSELYHAHSGRPG---APVPHVWVTRHGRRVSTLDLCGKGRFSL 498
>PI5PA_HUMAN (Q15735) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC| 3.1.3.56) Length = 1006 Score = 27.7 bits (60), Expect = 7.1 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +1 Query: 202 LPNPARRRERGRNHSPRPPPAESLAARPHVFIPRLG 309 LP P R R +HSP P + P + +PRLG Sbjct: 341 LPKPPRSPSRSPSHSPNRSPC--VPPAPDMALPRLG 374
>UL61_HCMVA (P16818) Hypothetical protein UL61| Length = 431 Score = 27.7 bits (60), Expect = 7.1 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 5/54 (9%) Frame = +2 Query: 2 KARRDILVDWLDPKKKASICQCLHGREAATSP-----RLLHRPPRSTPLPALLS 148 KA R+ DP+ + + GR A P R +P RSTPLP LL+ Sbjct: 92 KADREPAARPRDPRSRLAAGPSRGGRGAQPEPPRGSRRETRKPSRSTPLPELLT 145
>LCP2_HUMAN (Q13094) Lymphocyte cytosolic protein 2 (SH2 domain-containing| leucocyte protein of 76 kDa) (SLP-76 tyrosine phosphoprotein) (SLP76) Length = 533 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = +1 Query: 175 ISANQPQFLLPNPARRRERGRNHSPRPPP 261 + +P LP P GRNHSP PPP Sbjct: 188 VPPQRPMAALPPPPA----GRNHSPLPPP 212
>INSM1_MOUSE (Q63ZV0) Insulinoma-associated protein 1 (Zinc finger protein IA-1)| Length = 521 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/44 (36%), Positives = 18/44 (40%) Frame = +1 Query: 211 PARRRERGRNHSPRPPPAESLAARPHVFIPRLGRRCAERERSGG 342 PA R H PRP PA + A P R RE +GG Sbjct: 312 PANLASHRRWHKPRPVPAAARAPEPEA-----ATRAEAREAAGG 350
>REM1_HUMAN (O75628) GTP-binding protein REM 1 (Rad and Gem-like GTP-binding| protein 1) (GTPase-regulating endothelial cell sprouting) Length = 298 Score = 27.3 bits (59), Expect = 9.3 Identities = 15/37 (40%), Positives = 17/37 (45%) Frame = +1 Query: 217 RRRERGRNHSPRPPPAESLAARPHVFIPRLGRRCAER 327 RRR+ P P SLA R F+ RL R A R Sbjct: 246 RRRDSAAKEPPAPRRPASLAQRARRFLARLTARSARR 282
>RAI1_MOUSE (Q61818) Retinoic acid-induced protein 1| Length = 1889 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +1 Query: 202 LPNPARRRERGRNHSPRPPPAESLAA 279 + +P R R RG P PPP E AA Sbjct: 1249 MASPQRARPRGSGEPPPPPPLEPPAA 1274
>UBP42_HUMAN (Q9H9J4) Ubiquitin carboxyl-terminal hydrolase 42 (EC 3.1.2.15)| (Ubiquitin thioesterase 42) (Ubiquitin-specific-processing protease 42) (Deubiquitinating enzyme 42) Length = 1325 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/28 (50%), Positives = 15/28 (53%) Frame = +1 Query: 211 PARRRERGRNHSPRPPPAESLAARPHVF 294 PAR RER R SPR +LA P F Sbjct: 1105 PARERERHRPSSPRAGAPHALAPHPDRF 1132
>RUSC2_MOUSE (Q80U22) RUN and SH3 domain-containing protein 2| Length = 1514 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/40 (35%), Positives = 16/40 (40%) Frame = +1 Query: 199 LLPNPARRRERGRNHSPRPPPAESLAARPHVFIPRLGRRC 318 L P+PA R +H P E PHV P L C Sbjct: 322 LQPSPAESRMSCESHHPENGDREEGCGCPHVSSPELDANC 361
>POMT1_DROME (Q9VTK2) Protein O-mannosyltransferase 1 (EC 2.4.1.109)| (Dolichyl-phosphate-mannose--protein mannosyltransferase 1) (dPOMT1) (Protein rotated abdomen) Length = 886 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/52 (26%), Positives = 23/52 (44%) Frame = +1 Query: 190 PQFLLPNPARRRERGRNHSPRPPPAESLAARPHVFIPRLGRRCAERERSGGA 345 P+ P+P R R + SP P + SL+ + + G AE ++ A Sbjct: 111 PKQASPSPTSDRSRSLSRSPSPSRSRSLSCQKQIDKNSAGAASAEERKTANA 162 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,409,186 Number of Sequences: 219361 Number of extensions: 921309 Number of successful extensions: 3108 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2944 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3090 length of database: 80,573,946 effective HSP length: 98 effective length of database: 59,076,568 effective search space used: 1417837632 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
