Clone Name | bastl09f07 |
---|---|
Clone Library Name | barley_pub |
>emb|Z83844.5|HS37E16 Human DNA sequence from clone RP1-37E16 on chromosome 22 Contains the 3' part of the gene for a novel VHS domain containing protein similar to predicted worm and human proteins, the SH3BP1 gene for SH3-domain binding protein 1, the gene for a novel protein similar to nitrophenylphosphatases from various organisms, the LGALS1 gene for soluble galactoside-binding lectin 1, a novel gene and the gene for a novel protein similar to mouse RIP3 (P116 Rho-interacting protein) and rat RB109, complete sequence Length = 166181 Score = 46.1 bits (23), Expect = 0.079 Identities = 26/27 (96%) Strand = Plus / Minus Query: 117 cccgctccactcctctccccgccctcc 143 ||||| ||||||||||||||||||||| Sbjct: 51344 cccgccccactcctctccccgccctcc 51318
>gb|M57678.1|HUMHLL4G Human 14 kDa beta-galactoside-binding lectin (ll4) gene, complete cds Length = 4428 Score = 46.1 bits (23), Expect = 0.079 Identities = 26/27 (96%) Strand = Plus / Minus Query: 117 cccgctccactcctctccccgccctcc 143 ||||| ||||||||||||||||||||| Sbjct: 1948 cccgccccactcctctccccgccctcc 1922
>gb|AC133890.16| Mus musculus chromosome 10, clone RP23-339N24, complete sequence Length = 211758 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 124 cactcctctccccgccctcct 144 ||||||||||||||||||||| Sbjct: 25330 cactcctctccccgccctcct 25350
>gb|AC118689.16| Mus musculus chromosome 10, clone RP23-293N21, complete sequence Length = 163917 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 124 cactcctctccccgccctcct 144 ||||||||||||||||||||| Sbjct: 111679 cactcctctccccgccctcct 111699
>gb|AC127699.4| Mus musculus BAC clone RP24-114P21 from chromosome 7, complete sequence Length = 152811 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 183 caaccaaccacagtttcttct 203 ||||||||||||||||||||| Sbjct: 109420 caaccaaccacagtttcttct 109440
>emb|AL358791.24| Human DNA sequence from clone RP11-42B19 on chromosome 10 Contains the 3' end of a novel gene, complete sequence Length = 197389 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 183 caaccaaccacagtttcttct 203 ||||||||||||||||||||| Sbjct: 28165 caaccaaccacagtttcttct 28185
>emb|CR846096.4| Zebrafish DNA sequence from clone DKEYP-8C10 in linkage group 14, complete sequence Length = 91350 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 tggatccaaaaaagaaagcat 53 ||||||||||||||||||||| Sbjct: 87743 tggatccaaaaaagaaagcat 87723
>gb|AC171009.3| Gallus gallus BAC clone CH261-146H18 from chromosome ul, complete sequence Length = 197416 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 228 gagggggaggaatcattcccc 248 ||||||||||||||||||||| Sbjct: 195678 gagggggaggaatcattcccc 195658
>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete sequence Length = 190055 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 ggagagagagggggaggaat 240 |||||||||||||||||||| Sbjct: 42427 ggagagagagggggaggaat 42446
>gb|AC120843.11| Mus musculus chromosome 12, clone RP23-71C5, complete sequence Length = 220627 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 gacggagagagagggggagg 237 |||||||||||||||||||| Sbjct: 117169 gacggagagagagggggagg 117150
>gb|AY277592.2| Homo sapiens beta galactosyltransferase (BGALT15) mRNA, complete cds Length = 1894 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 117 cccgctccactcctctccccgccc 140 ||||||||||||| |||||||||| Sbjct: 268 cccgctccactcccctccccgccc 291
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 ggagagagagggggaggaat 240 |||||||||||||||||||| Sbjct: 21349516 ggagagagagggggaggaat 21349535
>gb|AC160963.2| Mus musculus BAC clone RP24-311B3 from chromosome 12, complete sequence Length = 155386 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 aaccacagtttcttctccct 207 |||||||||||||||||||| Sbjct: 105059 aaccacagtttcttctccct 105040
>ref|XM_534751.2| PREDICTED: Canis familiaris similar to Glutathione S-transferase theta 1 (GST class-theta 1) (Glutathione transferase T1-1) (LOC477556), mRNA Length = 1169 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 tccccgcggccgccccccgc 263 |||||||||||||||||||| Sbjct: 143 tccccgcggccgccccccgc 162
>gb|AC127231.4| Mus musculus BAC clone RP24-554M18 from chromosome 18, complete sequence Length = 140817 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 41 aaaaagaaagcatccatctgccag 64 |||| ||||||||||||||||||| Sbjct: 77539 aaaatgaaagcatccatctgccag 77562
>gb|AC116596.3| Mus musculus BAC clone RP24-335P21 from chromosome 15, complete sequence Length = 165103 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 ggagagagagggggaggaat 240 |||||||||||||||||||| Sbjct: 42490 ggagagagagggggaggaat 42471
>emb|CR640471.2|CNS0ET5P Tetraodon nigroviridis full-length cDNA Length = 1384 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 119 cgctccactcctctccccgccctc 142 |||||||||||||||||| ||||| Sbjct: 339 cgctccactcctctccccaccctc 316
>gb|AC154556.2| Mus musculus BAC clone RP23-423F3 from chromosome 14, complete sequence Length = 189092 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 184 aaccaaccacagtttcttctccct 207 |||||||||||||||| ||||||| Sbjct: 35491 aaccaaccacagtttcctctccct 35468
>ref|NM_198540.2| Homo sapiens UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8 (B3GNT8), mRNA Length = 1894 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 117 cccgctccactcctctccccgccc 140 ||||||||||||| |||||||||| Sbjct: 268 cccgctccactcccctccccgccc 291
>emb|BX897699.1| Bartonella henselae strain Houston-1, complete genome Length = 1931047 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 atggcgacaagacgcggccg 173 |||||||||||||||||||| Sbjct: 1019554 atggcgacaagacgcggccg 1019573
>emb|AJ303451.1|XTR303451 Xenopus tropicalis partial mRNA for cyclin B1 Length = 516 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 tattttggttgactggctgg 35 |||||||||||||||||||| Sbjct: 9 tattttggttgactggctgg 28
>gb|AC011526.7| Homo sapiens chromosome 19 clone LLNLR-224F1, complete sequence Length = 40887 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 117 cccgctccactcctctccccgccc 140 ||||||||||||| |||||||||| Sbjct: 31454 cccgctccactcccctccccgccc 31477
>gb|AC011462.4| Homo sapiens chromosome 19 clone CTC-435M10, complete sequence Length = 148841 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 117 cccgctccactcctctccccgccc 140 ||||||||||||| |||||||||| Sbjct: 3524 cccgctccactcccctccccgccc 3547
>emb|X99486.1|OSRYR2 Oryctolagus sp. RYR2 gene Length = 3819 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 221 ggagagagagggggaggaatcattcccc 248 |||||||||||| ||| ||||||||||| Sbjct: 1104 ggagagagagggagagaaatcattcccc 1131
>gb|AC154612.2| Mus musculus BAC clone RP23-338A21 from chromosome 14, complete sequence Length = 197282 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 184 aaccaaccacagtttcttctccct 207 |||||||||||||||| ||||||| Sbjct: 64872 aaccaaccacagtttcctctccct 64895
>gb|AC159202.2| Mus musculus BAC clone RP23-297L21 from chromosome 12, complete sequence Length = 210589 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 gacggagagagagggggagg 237 |||||||||||||||||||| Sbjct: 188631 gacggagagagagggggagg 188650
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence Length = 1813164 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 gccaaccaaccacagtttct 200 |||||||||||||||||||| Sbjct: 94711 gccaaccaaccacagtttct 94692
>gb|AC034187.6| Homo sapiens chromosome 3 clone RP11-202A21 map 3p, complete sequence Length = 171716 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 177 aagcgccaaccaaccacagtttct 200 |||| ||||||||||||||||||| Sbjct: 84641 aagccccaaccaaccacagtttct 84618
>emb|AL110735.1|CNS018S8 Botrytis cinerea strain T4 cDNA library Length = 1020 Score = 40.1 bits (20), Expect = 4.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 112 tcctccccgctccactcctctccccgccctcc 143 |||||| | |||||||||||||||| |||||| Sbjct: 691 tcctcctccctccactcctctcccctccctcc 722
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 ggagagagagggggaggaat 240 |||||||||||||||||||| Sbjct: 21342545 ggagagagagggggaggaat 21342564
>gb|AC155299.2| Mus musculus BAC clone RP24-229D17 from chromosome 15, complete sequence Length = 198559 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 ggagagagagggggaggaat 240 |||||||||||||||||||| Sbjct: 12555 ggagagagagggggaggaat 12574
>ref|NM_210719.1| Eremothecium gossypii AFL185Wp (AFL185W), mRNA Length = 2877 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 gccaaccaaccacagtttct 200 |||||||||||||||||||| Sbjct: 1187 gccaaccaaccacagtttct 1168
>gb|AC169088.2| Gallus gallus BAC clone CH261-100B3 from chromosome ul, complete sequence Length = 214859 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 atctgccagtgtttacatgg 75 |||||||||||||||||||| Sbjct: 205810 atctgccagtgtttacatgg 205829
>gb|AC132615.5| Mus musculus BAC clone RP23-301J15 from 9, complete sequence Length = 201718 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 ccaaccacagtttcttctcc 205 |||||||||||||||||||| Sbjct: 12983 ccaaccacagtttcttctcc 13002
>gb|AC149059.3| Mus musculus BAC clone RP23-325A2 from 18, complete sequence Length = 206973 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 41 aaaaagaaagcatccatctgccag 64 |||| ||||||||||||||||||| Sbjct: 121673 aaaatgaaagcatccatctgccag 121696 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,718,333 Number of Sequences: 3902068 Number of extensions: 3718333 Number of successful extensions: 94847 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94655 Number of HSP's gapped (non-prelim): 192 length of query: 368 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 346 effective length of database: 17,147,199,772 effective search space: 5932931121112 effective search space used: 5932931121112 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)