ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl09f03 |
|---|---|
| Clone Library Name | barley_pub |
>COPB2_MOUSE (O55029) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| (p102) Length = 905 Score = 97.1 bits (240), Expect = 9e-21 Identities = 42/57 (73%), Positives = 52/57 (91%) Frame = +3 Query: 210 MPLRLDIKRKLAQRSERVKSADLHPTGPWILSSLYSGSVCIWNYQTQTMVKSFEVTE 380 MPLRLDIKRKL RS+RVKS DLHPT PW+L+SLY+GSVC+WN++TQT+VK+FEV + Sbjct: 1 MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCD 57
>COPB2_HUMAN (P35606) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| (p102) Length = 905 Score = 95.1 bits (235), Expect = 4e-20 Identities = 41/56 (73%), Positives = 51/56 (91%) Frame = +3 Query: 213 PLRLDIKRKLAQRSERVKSADLHPTGPWILSSLYSGSVCIWNYQTQTMVKSFEVTE 380 PLRLDIKRKL RS+RVKS DLHPT PW+L+SLY+GSVC+WN++TQT+VK+FEV + Sbjct: 1 PLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCD 56
>COPB2_BOVIN (P35605) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| (p102) Length = 905 Score = 95.1 bits (235), Expect = 4e-20 Identities = 41/56 (73%), Positives = 51/56 (91%) Frame = +3 Query: 213 PLRLDIKRKLAQRSERVKSADLHPTGPWILSSLYSGSVCIWNYQTQTMVKSFEVTE 380 PLRLDIKRKL RS+RVKS DLHPT PW+L+SLY+GSVC+WN++TQT+VK+FEV + Sbjct: 1 PLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCD 56
>COPB2_RAT (O35142) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| (p102) Length = 904 Score = 92.8 bits (229), Expect = 2e-19 Identities = 40/56 (71%), Positives = 50/56 (89%) Frame = +3 Query: 213 PLRLDIKRKLAQRSERVKSADLHPTGPWILSSLYSGSVCIWNYQTQTMVKSFEVTE 380 PLRLDIKRKL S+RVKS DLHPT PW+L+SLY+GSVC+WN++TQT+VK+FEV + Sbjct: 1 PLRLDIKRKLTAMSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCD 56
>COPB2_CAEEL (Q20168) Probable coatomer subunit beta' (Beta'-coat protein)| (Beta'-COP) Length = 1000 Score = 86.3 bits (212), Expect = 2e-17 Identities = 38/57 (66%), Positives = 48/57 (84%) Frame = +3 Query: 210 MPLRLDIKRKLAQRSERVKSADLHPTGPWILSSLYSGSVCIWNYQTQTMVKSFEVTE 380 MPLRLD+KRKL RS+RVK DLHP W+L++LY+G+V IWNY+TQT+VKSFEV + Sbjct: 1 MPLRLDVKRKLLARSDRVKCVDLHPVETWLLAALYNGNVHIWNYETQTLVKSFEVCD 57 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%) Frame = +3 Query: 252 SERVKSADLHPTGPWILSSLYSGSVCIWNYQTQ-TMVKSFE 371 S+ ++S +HPT P+++SS V +W++ + M +SFE Sbjct: 99 SDYLRSLVVHPTLPYVISSSDDMLVKMWDWDNKWAMKQSFE 139
>COPB2_DROME (O62621) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| Length = 914 Score = 77.0 bits (188), Expect = 1e-14 Identities = 35/57 (61%), Positives = 43/57 (75%) Frame = +3 Query: 210 MPLRLDIKRKLAQRSERVKSADLHPTGPWILSSLYSGSVCIWNYQTQTMVKSFEVTE 380 MPL+LDIKR+L RS+RVK DLHP PW+L +LY+G V I NY+ Q MVK FEV + Sbjct: 1 MPLKLDIKRRLTSRSDRVKCVDLHPAEPWMLCALYNGHVHIMNYENQQMVKDFEVCD 57
>COPB2_SCHPO (O42937) Probable coatomer subunit beta' (Beta'-coat protein)| (Beta'-COP) Length = 796 Score = 75.5 bits (184), Expect = 3e-14 Identities = 30/55 (54%), Positives = 43/55 (78%) Frame = +3 Query: 216 LRLDIKRKLAQRSERVKSADLHPTGPWILSSLYSGSVCIWNYQTQTMVKSFEVTE 380 +RLD +RKL +ERVK+ D HPT PW+++S Y+G V IWNY TQT+V+SF++ + Sbjct: 2 MRLDFQRKLLSHTERVKAVDFHPTEPWVIASHYNGQVGIWNYNTQTLVRSFDIND 56
>COPB2_YEAST (P41811) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)| Length = 889 Score = 74.7 bits (182), Expect = 5e-14 Identities = 31/55 (56%), Positives = 43/55 (78%) Frame = +3 Query: 216 LRLDIKRKLAQRSERVKSADLHPTGPWILSSLYSGSVCIWNYQTQTMVKSFEVTE 380 ++LDIK+ + RS+RVK D HPT PW+L++LYSG V +WNY+TQ V+S +VTE Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTE 55 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = +3 Query: 261 VKSADLHPTGPWILSSLYSGSVCIWNYQTQTMVKSFEV 374 V A HPT P I+S G++ IWN T + K+ V Sbjct: 231 VSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%) Frame = +3 Query: 261 VKSADLHPTGPWILSSLYSGSVCIWNYQTQ-TMVKSFE 371 ++S +HPT P++LS +V +WN++ + ++FE Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE 137
>COPA_HUMAN (P53621) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)| (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related peptide); Proxenin] Length = 1224 Score = 47.0 bits (110), Expect = 1e-05 Identities = 18/45 (40%), Positives = 29/45 (64%) Frame = +3 Query: 237 KLAQRSERVKSADLHPTGPWILSSLYSGSVCIWNYQTQTMVKSFE 371 K +S RVK HP PWIL+SL++G + +W+Y+ T++ F+ Sbjct: 4 KFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFD 48 Score = 30.4 bits (67), Expect = 1.1 Identities = 11/33 (33%), Positives = 21/33 (63%) Frame = +3 Query: 261 VKSADLHPTGPWILSSLYSGSVCIWNYQTQTMV 359 +++ H PWILS+ ++ +WN+Q++T V Sbjct: 96 IRTTFFHHEYPWILSASDDQTIRVWNWQSRTCV 128
>COPA_BOVIN (Q27954) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)| (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related peptide); Proxenin] Length = 1224 Score = 47.0 bits (110), Expect = 1e-05 Identities = 18/45 (40%), Positives = 29/45 (64%) Frame = +3 Query: 237 KLAQRSERVKSADLHPTGPWILSSLYSGSVCIWNYQTQTMVKSFE 371 K +S RVK HP PWIL+SL++G + +W+Y+ T++ F+ Sbjct: 4 KFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFD 48 Score = 30.4 bits (67), Expect = 1.1 Identities = 11/33 (33%), Positives = 21/33 (63%) Frame = +3 Query: 261 VKSADLHPTGPWILSSLYSGSVCIWNYQTQTMV 359 +++ H PWILS+ ++ +WN+Q++T V Sbjct: 96 IRTTFFHHEYPWILSASDDQTIRVWNWQSRTCV 128
>COPA_YEAST (P53622) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)| Length = 1201 Score = 43.9 bits (102), Expect = 9e-05 Identities = 16/45 (35%), Positives = 28/45 (62%) Frame = +3 Query: 237 KLAQRSERVKSADLHPTGPWILSSLYSGSVCIWNYQTQTMVKSFE 371 K +S R K HP+ PW+L +L+S ++ +W+Y+ T++ FE Sbjct: 6 KFESKSTRAKGIAFHPSRPWVLVALFSSTIQLWDYRMGTLLHRFE 50
>COPA_CANFA (P40765) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)| (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related peptide); Proxenin] (Fragment) Length = 35 Score = 34.7 bits (78), Expect = 0.057 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = +3 Query: 237 KLAQRSERVKSADLHPTGPWILSSLYSGSV 326 K +S RVK HP PWIL+SL++G + Sbjct: 4 KFETKSARVKGLSFHPKRPWILTSLHNGVI 33
>Y143_SYNY3 (P74442) Hypothetical WD-repeat protein slr0143| Length = 1191 Score = 33.1 bits (74), Expect = 0.17 Identities = 14/40 (35%), Positives = 25/40 (62%) Frame = +3 Query: 246 QRSERVKSADLHPTGPWILSSLYSGSVCIWNYQTQTMVKS 365 QR E ++S LHPT P + + G++ +WN+ T+++S Sbjct: 995 QRKEPIRSVSLHPTLPQLAAGDEQGNLTLWNFD-GTLIRS 1033
>POL_HV2G1 (P18042) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1463 Score = 32.0 bits (71), Expect = 0.37 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Frame = +2 Query: 98 REAGHPRGSASHAPAPTNPLGTSSSRGSRFGALPSRHNAAPVG--YQEEARAEVGEGQ 265 R+AG R + AP P G SSS G+ + PSR ++ +G Y RAE EG+ Sbjct: 428 RQAGFLRDGSMGKEAPQLPRGPSSS-GADTNSTPSRSSSGSIGKIYAAGERAEGAEGE 484
>POL_HV2D1 (P17757) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1461 Score = 31.6 bits (70), Expect = 0.49 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%) Frame = +2 Query: 98 REAGHPRGSASHAPAPTNPLGTSSSRGSRFGALPSRHNAAPVG--YQEEARAEVGEGQ 265 R+AG G A AP P G SSS G+ + P+R ++ PVG Y +AE EG+ Sbjct: 427 RQAGFLDGPTGKA-APQLPRGPSSS-GADTNSTPNRSSSGPVGEIYAAREKAERAEGE 482
>MN1_HUMAN (Q10571) Probable tumor suppressor protein MN1| Length = 1319 Score = 31.6 bits (70), Expect = 0.49 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Frame = +2 Query: 110 HPRGSASHA-PAPTNPLGTSSSRGSRFGALPSRHNAAPVGYQEEARAEVGEGQV 268 H G++SHA PAP PL S +R + F LPS ++ + E R +G V Sbjct: 177 HSSGASSHAVPAPCLPLDQSPNRAASFHGLPS--SSGSDSHSLEPRRVTNQGAV 228 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/30 (50%), Positives = 18/30 (60%) Frame = +2 Query: 113 PRGSASHAPAPTNPLGTSSSRGSRFGALPS 202 P G+A AP P P GTSSS GS+ P+ Sbjct: 879 PGGTAPGAPGPGGPSGTSSS-GSKASGPPN 907
>ATN1_PANTR (Q5IS70) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1186 Score = 31.6 bits (70), Expect = 0.49 Identities = 18/40 (45%), Positives = 21/40 (52%) Frame = +2 Query: 107 GHPRGSASHAPAPTNPLGTSSSRGSRFGALPSRHNAAPVG 226 G P G H P PT P+ SSS S GA P++ PVG Sbjct: 244 GGPNGGKQHPP-PTTPISVSSSGAS--GAPPTKPPTTPVG 280
>ATN1_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1185 Score = 31.6 bits (70), Expect = 0.49 Identities = 18/40 (45%), Positives = 21/40 (52%) Frame = +2 Query: 107 GHPRGSASHAPAPTNPLGTSSSRGSRFGALPSRHNAAPVG 226 G P G H P PT P+ SSS S GA P++ PVG Sbjct: 245 GGPNGGKQHPP-PTTPISVSSSGAS--GAPPTKPPTTPVG 281
>TBL1R_MOUSE (Q8BHJ5) F-box-like/WD-repeat protein TBL1XR1 (Transducin beta-like| 1X-related protein 1) (Nuclear receptor corepressor/HDAC3 complex subunit TBLR1) (TBL1-related protein 1) Length = 514 Score = 30.8 bits (68), Expect = 0.83 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = +3 Query: 240 LAQRSERVKSADLHPTGPWILSSLYSGSVCIWNYQTQTMVKSFEVT 377 L + E V S P G ++ S + V IWN QT +V S+ T Sbjct: 438 LTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGT 483
>TBL1R_HUMAN (Q9BZK7) F-box-like/WD-repeat protein TBL1XR1 (Transducin beta-like| 1X-related protein 1) (Nuclear receptor corepressor/HDAC3 complex subunit TBLR1) (TBL1-related protein 1) Length = 514 Score = 30.8 bits (68), Expect = 0.83 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = +3 Query: 240 LAQRSERVKSADLHPTGPWILSSLYSGSVCIWNYQTQTMVKSFEVT 377 L + E V S P G ++ S + V IWN QT +V S+ T Sbjct: 438 LTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGT 483
>MYO2A_SACCA (Q875X3) Myosin-2A (Class V unconventional myosin MYO2A) (Type V| myosin heavy chain MYO2A) (Myosin V MYO2A) Length = 1567 Score = 30.8 bits (68), Expect = 0.83 Identities = 16/50 (32%), Positives = 23/50 (46%) Frame = +2 Query: 155 LGTSSSRGSRFGALPSRHNAAPVGYQEEARAEVGEGQVRGSASDRAMDFV 304 LGT ++ + PSR N P G+ A + Q++ SD A D V Sbjct: 1091 LGTVTTNTNIVPHTPSRENRMPSGHMRAAEENISPNQLKSIPSDTAADHV 1140
>TB1RB_XENLA (Q6GPC6) F-box-like/WD-repeat-containing protein TBL1XR1-B| (Transducin beta-like 1X-related homolog 1-B) (Nuclear receptor corepressor/HDAC3 complex subunit TBLR1-B) (TBL1-related protein 1-B) Length = 522 Score = 30.8 bits (68), Expect = 0.83 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = +3 Query: 240 LAQRSERVKSADLHPTGPWILSSLYSGSVCIWNYQTQTMVKSFEVT 377 L + E V S P G ++ S + V IWN QT +V S+ T Sbjct: 446 LTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGT 491
>TB1RA_XENLA (Q7SZM9) F-box-like/WD-repeat-containing protein TBL1XR1-A| (Transducin beta-like 1X-related protein 1-A) (Nuclear receptor corepressor/HDAC3 complex subunit TBLR1-A) (TBL1-related protein 1-A) (xTBLR1) Length = 519 Score = 30.8 bits (68), Expect = 0.83 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = +3 Query: 240 LAQRSERVKSADLHPTGPWILSSLYSGSVCIWNYQTQTMVKSFEVT 377 L + E V S P G ++ S + V IWN QT +V S+ T Sbjct: 443 LTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGT 488
>TBLX_MOUSE (Q9QXE7) F-box-like/WD-repeat protein TBL1X (Transducin beta-like| 1X protein) Length = 527 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = +3 Query: 240 LAQRSERVKSADLHPTGPWILSSLYSGSVCIWNYQTQTMVKSFEVT 377 L + E V S P G ++ S + V IWN Q+ ++V S+ T Sbjct: 451 LTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGSLVHSYRGT 496
>TBL1Y_HUMAN (Q9BQ87) F-box-like/WD-repeat protein TBL1Y (Transducin beta-like| 1Y protein) (Transducin-beta-like 1, Y-linked) Length = 522 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/46 (32%), Positives = 24/46 (52%) Frame = +3 Query: 240 LAQRSERVKSADLHPTGPWILSSLYSGSVCIWNYQTQTMVKSFEVT 377 L + E V S P G ++ S + V IWN Q+ ++V S++ T Sbjct: 448 LMKHQEPVYSVAFSPDGKYLASGSFDKYVHIWNTQSGSLVHSYQGT 493
>STRN_RAT (P70483) Striatin| Length = 780 Score = 29.6 bits (65), Expect = 1.8 Identities = 11/38 (28%), Positives = 23/38 (60%) Frame = +3 Query: 255 ERVKSADLHPTGPWILSSLYSGSVCIWNYQTQTMVKSF 368 E V S + P G +++S + S+ +WN +++T ++ F Sbjct: 707 EAVTSLAVDPNGLYLMSGSHDCSIRLWNLESKTCIQEF 744
>STRN_MOUSE (O55106) Striatin| Length = 780 Score = 29.6 bits (65), Expect = 1.8 Identities = 11/38 (28%), Positives = 23/38 (60%) Frame = +3 Query: 255 ERVKSADLHPTGPWILSSLYSGSVCIWNYQTQTMVKSF 368 E V S + P G +++S + S+ +WN +++T ++ F Sbjct: 707 EAVTSLAVDPNGLYLMSGSHDCSIRLWNLESKTCIQEF 744
>STRN_HUMAN (O43815) Striatin| Length = 780 Score = 29.6 bits (65), Expect = 1.8 Identities = 11/38 (28%), Positives = 23/38 (60%) Frame = +3 Query: 255 ERVKSADLHPTGPWILSSLYSGSVCIWNYQTQTMVKSF 368 E V S + P G +++S + S+ +WN +++T ++ F Sbjct: 707 EAVTSLAVDPNGLYLMSGSHDCSIRLWNLESKTCIQEF 744
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 29.6 bits (65), Expect = 1.8 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Frame = +2 Query: 194 LPSRHNAAPVGYQEEARAEV-GEGQVRGSASDRAMDFVESLLGECLHLELPNADHGE 361 +PS AA VGY+EE + G+G+ DR D+ ++ +L N DHGE Sbjct: 180 VPSETPAALVGYREEELKNLRGDGKGERKEHDRIYDY-------DVYNDLGNPDHGE 229
>TBL1X_HUMAN (O60907) F-box-like/WD-repeat protein TBL1X (Transducin beta-like| 1X protein) (Transducin-beta-like 1, X-linked) (SMAP55) Length = 526 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = +3 Query: 240 LAQRSERVKSADLHPTGPWILSSLYSGSVCIWNYQTQTMVKSFEVT 377 L + E V S P G ++ S + V IWN Q+ +V S+ T Sbjct: 450 LTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGNLVHSYRGT 495
>Y163_SYNY3 (Q55563) Hypothetical WD-repeat protein sll0163| Length = 1693 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +3 Query: 261 VKSADLHPTGPWILSSLYSGSVCIWNYQT 347 V+SA+ P G W+L+S G+ +W +T Sbjct: 1632 VRSAEFSPDGRWVLTSSADGTAKLWPVKT 1660
>TLE2_HUMAN (Q04725) Transducin-like enhancer protein 2 (ESG2)| Length = 743 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/48 (27%), Positives = 23/48 (47%) Frame = +3 Query: 228 IKRKLAQRSERVKSADLHPTGPWILSSLYSGSVCIWNYQTQTMVKSFE 371 IK +L + + + P S G++ +W+ Q QTMV+ F+ Sbjct: 539 IKAELTSSAPACYALAVSPDAKVCFSCCSDGNIVVWDLQNQTMVRQFQ 586
>ATN1_RAT (P54258) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1183 Score = 29.3 bits (64), Expect = 2.4 Identities = 18/40 (45%), Positives = 21/40 (52%) Frame = +2 Query: 107 GHPRGSASHAPAPTNPLGTSSSRGSRFGALPSRHNAAPVG 226 G P G H P PT P+ SSS S GA P++ PVG Sbjct: 246 GPPSGGKQHPP-PTTPIPISSSGAS--GAPPAKPPNTPVG 282
>YRIQ_CAEEL (P90794) Hypothetical WD-repeat protein D2030.9| Length = 571 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/38 (31%), Positives = 20/38 (52%) Frame = +3 Query: 228 IKRKLAQRSERVKSADLHPTGPWILSSLYSGSVCIWNY 341 + R+L + V+ D HPT I+SS + G +W + Sbjct: 476 VSRRLKGHTAVVRECDWHPTENEIVSSAWDGVTTVWTW 513
>YL409_YEAST (Q06078) Hypothetical 104.8 kDa Trp-Asp repeats-containing protein| in RPL31B-VIP1 intergenic region Length = 939 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/40 (30%), Positives = 21/40 (52%) Frame = +3 Query: 228 IKRKLAQRSERVKSADLHPTGPWILSSLYSGSVCIWNYQT 347 + R+L S R+ + D P G WI+S+ ++ W+ T Sbjct: 577 VVRQLWGHSNRITAFDFSPEGRWIVSASLDSTIRTWDLPT 616
>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2161 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/47 (29%), Positives = 20/47 (42%) Frame = +2 Query: 113 PRGSASHAPAPTNPLGTSSSRGSRFGALPSRHNAAPVGYQEEARAEV 253 P G + P LG+ R + A+P R A YQ +A E+ Sbjct: 527 PAGGTGGSGGPGGSLGSRGRRRKLYSAVPGRSFMAVKSYQAQAEGEI 573
>GBB_ORYSA (Q40687) Guanine nucleotide-binding protein beta subunit| Length = 380 Score = 28.9 bits (63), Expect = 3.2 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = +3 Query: 213 PLRLDIKRKLAQRSERVKSADLHPTGPWILSSLYSGSVCIWNYQT 347 P L R L S +V S D P WI+S+ G + +WN T Sbjct: 53 PTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALT 97
>GBB_MAIZE (P49178) Guanine nucleotide-binding protein beta subunit| Length = 380 Score = 28.9 bits (63), Expect = 3.2 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = +3 Query: 213 PLRLDIKRKLAQRSERVKSADLHPTGPWILSSLYSGSVCIWNYQT 347 P L R L S +V S D P WI+S+ G + +WN T Sbjct: 53 PTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALT 97
>HXD13_HETFR (Q9IA17) Homeobox protein Hox-D13| Length = 284 Score = 28.9 bits (63), Expect = 3.2 Identities = 18/57 (31%), Positives = 26/57 (45%) Frame = +2 Query: 128 SHAPAPTNPLGTSSSRGSRFGALPSRHNAAPVGYQEEARAEVGEGQVRGSASDRAMD 298 S PAPT+P + S G FG+ S ++ VG Q+ + G D+ MD Sbjct: 53 SPCPAPTSPPNPAISYGYHFGS--SYYSCRNVGIQQTGLKSGAHASLAGYPVDKYMD 107
>IRAK1_HUMAN (P51617) Interleukin-1 receptor-associated kinase 1 (EC 2.7.11.1)| (IRAK-1) Length = 712 Score = 28.9 bits (63), Expect = 3.2 Identities = 18/70 (25%), Positives = 32/70 (45%) Frame = +2 Query: 107 GHPRGSASHAPAPTNPLGTSSSRGSRFGALPSRHNAAPVGYQEEARAEVGEGQVRGSASD 286 GH ++ P+P SS+ + GA P + AAP G +A ++ G + SD Sbjct: 530 GHSEAASCIPPSPQENSYVSSTGRAHSGAAPWQPLAAPSGASAQAAEQLQRGPNQPVESD 589 Query: 287 RAMDFVESLL 316 ++ + + L Sbjct: 590 ESLGGLSAAL 599
>PDE8B_HUMAN (O95263) High-affinity cAMP-specific and IBMX-insensitive| 3',5'-cyclic phosphodiesterase 8B (EC 3.1.4.17) (HSPDE8B) Length = 885 Score = 28.9 bits (63), Expect = 3.2 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Frame = +2 Query: 101 EAGHPRGSASHAPAPTNPLGTSSSRGSRFGALPSRHNAAP--VGYQEEARAEVGEGQVRG 274 E+ PR + S + P PL + A+P + P V AR E+G G G Sbjct: 22 ESSSPRQTTSVSQGPAAPLPGLFVQTDAADAIPPSRASGPPSVARVRRARTELGSGSSAG 81 Query: 275 SASDRA 292 SA+ A Sbjct: 82 SAAPAA 87
>IL32_HUMAN (P24001) Interleukin-32 precursor (IL-32) (Natural killer cells| protein 4) Length = 234 Score = 28.5 bits (62), Expect = 4.1 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = +2 Query: 194 LPSRHNAAPVGYQEEARAEVGEGQVRGSASDRAMDFVESLL 316 L S+H A Y + AE G GQV S ++ DF E L Sbjct: 61 LSSQHQAIERFYDKMQNAESGRGQVMSSLAELEDDFKEGYL 101
>4ET_HUMAN (Q9NRA8) Eukaryotic translation initiation factor 4E transporter| (eIF4E transporter) (4E-T) (Eukaryotic translation initiation factor 4E nuclear import factor 1) Length = 985 Score = 28.5 bits (62), Expect = 4.1 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 8/53 (15%) Frame = +2 Query: 92 VRREAGHPRGSASHAPA---PTNPLGTSSSRG-----SRFGALPSRHNAAPVG 226 ++R HP GS SHA A T P S G S+ PS+ +++PVG Sbjct: 902 LQRSVLHPPGSGSHAAAVSVQTTPQNVPSRSGLPHMHSQLEHRPSQRSSSPVG 954
>CHEB1_PSEAE (O87125) Chemotaxis response regulator protein-glutamate| methylesterase of group 1 operon (EC 3.1.1.61) Length = 368 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/33 (39%), Positives = 21/33 (63%) Frame = +2 Query: 122 SASHAPAPTNPLGTSSSRGSRFGALPSRHNAAP 220 S+SHAPA ++ +G S+ G+ P+ +AAP Sbjct: 147 SSSHAPASSSSVGASARVGAGASPAPASTSAAP 179
>TLE1_XENLA (O42469) Enhancer of split groucho-like protein 1| Length = 767 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/48 (25%), Positives = 23/48 (47%) Frame = +3 Query: 228 IKRKLAQRSERVKSADLHPTGPWILSSLYSGSVCIWNYQTQTMVKSFE 371 IK +L + + + P S G++ +W+ Q QT+V+ F+ Sbjct: 563 IKAELTSSAPACYALAISPDAKVCFSCCSDGNIVVWDLQNQTLVRQFQ 610
>SWD3_SCHPO (O43017) Set1 complex component swd3 (Set1C component swd3)| (COMPASS component swd3) (Complex proteins associated with set1 protein swd3) Length = 380 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = +3 Query: 234 RKLAQRSERVKSADLHPTGPWILSSLYSGSVCIWNYQTQTMVK 362 R L + V S D +P G ++S + +V IWN Q T ++ Sbjct: 132 RCLKGHTNYVSSIDFNPLGTLLVSGSWDETVRIWNLQDGTCLR 174
>EBI_DROME (Q95RJ9) F-box-like/WD repeat protein ebi| Length = 700 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = +3 Query: 240 LAQRSERVKSADLHPTGPWILSSLYSGSVCIWNYQTQTMVKSFEVT 377 L + +E V S P G + S + V IW+ QT +V S++ T Sbjct: 623 LTKHTEPVYSVAFSPDGKHLASGSFDKCVHIWSTQTGQLVHSYKGT 668
>BOP1_HUMAN (Q14137) Ribosome biogenesis protein BOP1 (Block of proliferation 1| protein) Length = 746 Score = 28.1 bits (61), Expect = 5.4 Identities = 12/41 (29%), Positives = 21/41 (51%) Frame = +3 Query: 252 SERVKSADLHPTGPWILSSLYSGSVCIWNYQTQTMVKSFEV 374 S+ V+ + P G W++S GS+ +W T V++ V Sbjct: 413 SDLVRCLSVSPGGQWLVSGSDDGSLRLWEVATARCVRTVPV 453
>Y1409_SYNY3 (P73594) Hypothetical WD-repeat protein slr1409| Length = 326 Score = 28.1 bits (61), Expect = 5.4 Identities = 11/37 (29%), Positives = 22/37 (59%) Frame = +3 Query: 228 IKRKLAQRSERVKSADLHPTGPWILSSLYSGSVCIWN 338 I+R+++ R+ + + P G +L+S +GS +WN Sbjct: 204 IEREISTGQGRINNVNFSPNGEQLLTSGINGSAKLWN 240
>WSB2_MOUSE (O54929) WD repeat and SOCS box-containing protein 2 (WSB-2) (SOCS| box-containing WD protein SWiP-2) Length = 404 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/49 (28%), Positives = 23/49 (46%) Frame = +3 Query: 234 RKLAQRSERVKSADLHPTGPWILSSLYSGSVCIWNYQTQTMVKSFEVTE 380 RKL V S D P ++++ Y SV +W+ T ++S T+ Sbjct: 233 RKLEGHQSSVVSCDFSPDSALLVTASYDTSVIMWDPYTGARLRSLHHTQ 281
>MKL1_HUMAN (Q969V6) MKL/myocardin-like protein 1 (Myocardin-related| transcription factor A) (MRTF-A) (Megakaryoblastic leukemia 1 protein) (Megacaryocytic acute leukemia protein) Length = 931 Score = 28.1 bits (61), Expect = 5.4 Identities = 20/63 (31%), Positives = 29/63 (46%) Frame = +2 Query: 128 SHAPAPTNPLGTSSSRGSRFGALPSRHNAAPVGYQEEARAEVGEGQVRGSASDRAMDFVE 307 S APAP+ + FG S P GY EEA ++ + Q GS+S + D + Sbjct: 695 SPAPAPSAQMDLEHPLQPLFGTPTSLLKKEPPGY-EEAMSQQPKQQENGSSSQQMDDLFD 753 Query: 308 SLL 316 L+ Sbjct: 754 ILI 756
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/56 (28%), Positives = 26/56 (46%) Frame = +2 Query: 95 RREAGHPRGSASHAPAPTNPLGTSSSRGSRFGALPSRHNAAPVGYQEEARAEVGEG 262 R +G P +A PAP +P+ + S + A+P++ +P AR EG Sbjct: 792 RSVSGSPEPAAKKPPAPPSPVQSQSPSTNWSPAVPAKKAKSPTPSLSPARNSDQEG 847
>IF2_XANCP (Q8P7U7) Translation initiation factor IF-2| Length = 916 Score = 27.7 bits (60), Expect = 7.0 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 11/74 (14%) Frame = +2 Query: 104 AGHPRGSASHAPAPTNPLGTSSSRGSRFGALP-SRHNAAP----------VGYQEEARAE 250 A S S AP P P G S + A P R+NAA G +++ + Sbjct: 214 AARAPSSPSSAPRPARPAGASPASRPATPARPDDRNNAAKHKTRGSHVMVAGVEDDDATK 273 Query: 251 VGEGQVRGSASDRA 292 GQ+ SA+DRA Sbjct: 274 RFAGQLHLSAADRA 287
>PRDM8_HUMAN (Q9NQV8) PR domain zinc finger protein 8 (PR domain-containing| protein 8) Length = 689 Score = 27.7 bits (60), Expect = 7.0 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 7/58 (12%) Frame = +2 Query: 134 APAPTNPL-----GTSSSRGSRFGALPSRHNAAPV--GYQEEARAEVGEGQVRGSASD 286 AP P PL G S +RGS F ++P +A G A A G G +G+ASD Sbjct: 438 APRPGGPLPSRLEGGSPARGSAFTSVPQLGSAGSTSGGGGTGAGAAGGAGGGQGAASD 495
>IF2_XANC8 (Q4UWA2) Translation initiation factor IF-2| Length = 902 Score = 27.7 bits (60), Expect = 7.0 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 11/74 (14%) Frame = +2 Query: 104 AGHPRGSASHAPAPTNPLGTSSSRGSRFGALP-SRHNAAP----------VGYQEEARAE 250 A S S AP P P G S + A P R+NAA G +++ + Sbjct: 200 AARAPSSPSSAPRPARPAGASPASRPATPARPDDRNNAAKHKTRGSHVMVAGVEDDDATK 259 Query: 251 VGEGQVRGSASDRA 292 GQ+ SA+DRA Sbjct: 260 RFAGQLHLSAADRA 273
>HAT2_YARLI (Q6C7Q4) Histone acetyltransferase type B subunit 2 (EC 2.3.1.48)| Length = 452 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%) Frame = +3 Query: 252 SERVKSADLHPTGPWILSSLYSGSVC-IW 335 S R+ D HPT PW+++S +V +W Sbjct: 403 SSRISDFDWHPTLPWVIASAAEDNVIQVW 431
>PF20_CHLRE (P93107) Flagellar WD-repeat protein PF20| Length = 606 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = +3 Query: 261 VKSADLHPTGPWILSSLYSGSVCIWNYQTQTMVKSF 368 V D HP G + S +V IW+++ Q V +F Sbjct: 371 VAGVDFHPAGTCLASGGGDSAVKIWDFEKQRCVTTF 406
>YKY4_CAEEL (Q17963) Hypothetical WD-repeat protein C14B1.4| Length = 376 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +3 Query: 288 GPWILSSLYSGSVCIWNYQTQTMVKSFE 371 G WI+S + IWN QT+ +V+ E Sbjct: 313 GKWIISGSEDCKIYIWNLQTREIVQCLE 340
>DIP2_YEAST (Q12220) DOM34-interacting protein 2 (U3 small nucleolar| RNA-associated protein 12) (U3 snoRNA-associated protein 12) Length = 943 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/53 (30%), Positives = 30/53 (56%) Frame = +3 Query: 213 PLRLDIKRKLAQRSERVKSADLHPTGPWILSSLYSGSVCIWNYQTQTMVKSFE 371 PL+ QR++ V+S D+ +L++ +GS+ IWN +T +++FE Sbjct: 379 PLKTHTIELQGQRTD-VRSIDISDDNK-LLATASNGSLKIWNIKTHKCIRTFE 429
>YR731_MIMIV (Q5UNY1) Putative BTB/POZ domain and WD-repeat protein R731| Length = 518 Score = 27.3 bits (59), Expect = 9.2 Identities = 7/21 (33%), Positives = 16/21 (76%) Frame = +3 Query: 318 GSVCIWNYQTQTMVKSFEVTE 380 G +CIWN +T+ ++++ + +E Sbjct: 460 GKICIWNIETEQIIQNIDCSE 480
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/56 (28%), Positives = 25/56 (44%) Frame = +2 Query: 95 RREAGHPRGSASHAPAPTNPLGTSSSRGSRFGALPSRHNAAPVGYQEEARAEVGEG 262 R +G P +A PAPT+P+ + S + A+P + +P R EG Sbjct: 764 RSVSGSPEPAAKKPPAPTSPVQSQSPSTNWSPAVPVKKAKSPTPSPSPPRNSDQEG 819
>WDR23_MOUSE (Q91VU6) WD-repeat protein 23| Length = 549 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/39 (30%), Positives = 20/39 (51%) Frame = +3 Query: 228 IKRKLAQRSERVKSADLHPTGPWILSSLYSGSVCIWNYQ 344 I +KL V+ HP I+SS + G++ +W Y+ Sbjct: 475 IVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQYR 513
>SKB15_SCHPO (O74453) Shk1 kinase-binding protein 15| Length = 341 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/37 (32%), Positives = 22/37 (59%) Frame = +3 Query: 228 IKRKLAQRSERVKSADLHPTGPWILSSLYSGSVCIWN 338 I + +RVKS ++P +++++ GSVCIW+ Sbjct: 231 ILHEFTAHKKRVKS--VYPVDDYLITASSDGSVCIWD 265
>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon) (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2167 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/47 (27%), Positives = 19/47 (40%) Frame = +2 Query: 113 PRGSASHAPAPTNPLGTSSSRGSRFGALPSRHNAAPVGYQEEARAEV 253 P G + P LG+ R + A+P R A YQ + E+ Sbjct: 527 PAGGTGGSGGPGGSLGSRGRRRKLYSAVPGRSFMAVKSYQAQGEGEI 573
>WDR5_MOUSE (P61965) WD-repeat protein 5 (BMP2-induced 3-kb gene protein)| (WD-repeat protein BIG-3) Length = 334 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +3 Query: 288 GPWILSSLYSGSVCIWNYQTQTMVKSFE 371 G WI+S V IWN QT+ +V+ + Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQ 298
>WDR5_HUMAN (P61964) WD-repeat protein 5 (BMP2-induced 3-kb gene protein)| Length = 334 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +3 Query: 288 GPWILSSLYSGSVCIWNYQTQTMVKSFE 371 G WI+S V IWN QT+ +V+ + Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQ 298
>IRS2_MOUSE (P81122) Insulin receptor substrate 2 (IRS-2) (4PS)| Length = 1321 Score = 27.3 bits (59), Expect = 9.2 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 5/59 (8%) Frame = +2 Query: 125 ASHAPAPTNPLGTSSSRGSRFGALP-----SRHNAAPVGYQEEARAEVGEGQVRGSASD 286 A PA T+P SSS G G+ P H P+ + + R G GS SD Sbjct: 433 AHSPPAATSPGSLSSSSGHGSGSYPLPPGSHPHLPHPLHHPQGQRPSSGSASASGSPSD 491
>WDR23_HUMAN (Q8TEB1) WD-repeat protein 23| Length = 546 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/39 (30%), Positives = 20/39 (51%) Frame = +3 Query: 228 IKRKLAQRSERVKSADLHPTGPWILSSLYSGSVCIWNYQ 344 I +KL V+ HP I+SS + G++ +W Y+ Sbjct: 475 IVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQYR 513 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,751,787 Number of Sequences: 219361 Number of extensions: 668826 Number of successful extensions: 3040 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 2795 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3036 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
