>MUCDL_HUMAN (Q9HBB8) Mucin and cadherin-like protein precursor|
           (Mu-protocadherin)
          Length = 845

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = -2

Query: 263 TTTSQGSGPDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNPRGDEVSGRKP 99
           +TTS G G    P +G  LRP   +  P G  G  +    +   P GD     KP
Sbjct: 492 STTSSGGGTGPHPPSGTTLRPP-TSSTPGGSPGAENSTSHQPATPGGDTAQTPKP 545

>TRXB_ASHGO (Q75CM8) Thioredoxin reductase (EC 1.8.1.9)|
          Length = 319

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = -1

Query: 354 FGTKSR*IQSEVCSVDIAIEPLKCVTIFDLDDDVPXXXXXXXXXXXXXAQAGHGGRETLW 175
           FGT+   +   V  VD++  P K  T F+ D++                + G  G ET W
Sbjct: 78  FGTEV--VTETVAKVDLSARPFKLWTEFNEDEEPTTTDAIILATGASAKRLGLPGEETYW 135

Query: 174 ER 169
           +R
Sbjct: 136 QR 137

>CACB2_MOUSE (Q8CC27) Voltage-dependent L-type calcium channel beta-2 subunit|
           (CAB2) (Calcium channel, voltage-dependent, beta 2
           subunit)
          Length = 655

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -2

Query: 290 LSVSPYLTLTTTSQGSGPDARPSNGGALRPDMAAEKPC 177
           L +SP  TL + SQGS  D RP          A E+PC
Sbjct: 482 LPLSP--TLASNSQGSQGDQRPDRSAPRSASQAEEEPC 517

>RS5_SYNPX (Q7U4I4) 30S ribosomal protein S5|
          Length = 215

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -2

Query: 266 LTTTSQGSGPDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNPRGD 120
           +T +S  S P+A P            ++   RGGGR +R + R   RGD
Sbjct: 1   MTDSSPQSNPNAVPGAADVPAAAEGQQQEQRRGGGRGERGDRRGGRRGD 49

>CTDP1_HUMAN (Q9Y5B0) RNA polymerase II subunit A C-terminal domain phosphatase|
           (EC 3.1.3.16) (TFIIF-associating CTD phosphatase)
          Length = 961

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 239 PDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNPRGDEVSG 108
           PD  P  GG  + +   +  CG G G +DR E     +  E+SG
Sbjct: 524 PDKEPELGG--QEEGERDGLCGLGNGCADRKEAETESQNSELSG 565

>NRBP_PONPY (Q5RBH9) Nuclear receptor-binding protein|
          Length = 535

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = -2

Query: 293 LLSVSPYLTLTTTSQGSGPDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNP 129
           L SVSP +T +TTS  S  +   S   +   ++  E PCGR   R + V +R  P
Sbjct: 27  LTSVSPPVT-STTSAASPEEEEESEDES---EILEESPCGRWQKRREEVNQRNVP 77

>NRBP_MOUSE (Q99J45) Nuclear receptor-binding protein (MLF1 adapter molecule)|
           (HLS7-interacting protein kinase)
          Length = 535

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = -2

Query: 293 LLSVSPYLTLTTTSQGSGPDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNP 129
           L SVSP +T +TTS  S  +   S   +   ++  E PCGR   R + V +R  P
Sbjct: 27  LTSVSPPVT-STTSAASPEEEEESEDES---EILEESPCGRWQKRREEVNQRNVP 77

>NRBP_MACFA (Q4R8X0) Nuclear receptor-binding protein|
          Length = 535

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = -2

Query: 293 LLSVSPYLTLTTTSQGSGPDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNP 129
           L SVSP +T +TTS  S  +   S   +   ++  E PCGR   R + V +R  P
Sbjct: 27  LTSVSPPVT-STTSAASPEEEEESEDES---EILEESPCGRWQKRREEVNQRNVP 77

>NRBP_HUMAN (Q9UHY1) Nuclear receptor-binding protein|
          Length = 535

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = -2

Query: 293 LLSVSPYLTLTTTSQGSGPDARPSNGGALRPDMAAEKPCGRGGGRSDRVEERVNP 129
           L SVSP +T +TTS  S  +   S   +   ++  E PCGR   R + V +R  P
Sbjct: 27  LTSVSPPVT-STTSAASPEEEEESEDES---EILEESPCGRWQKRREEVNQRNVP 77

>SYT3_HUMAN (Q9BQG1) Synaptotagmin-3 (Synaptotagmin III) (SytIII)|
          Length = 590

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 251 QGSGPDARPSNGGALRPDMAAEKPCGR 171
           QG+GP  R S GG    +     PCGR
Sbjct: 276 QGTGPGGRRSGGGPGSGEAGTGAPCGR 302

>GCS1_YEAST (P35197) ADP-ribosylation factor GTPase-activating protein GCS1|
          Length = 352

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 148 WRSGSILEETKLAAGNLGQ 92
           W+SG + EETK AA   GQ
Sbjct: 276 WQSGELSEETKRAAAQFGQ 294

>DTD_STREQ (Q54088) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)|
          Length = 147

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 296 NLLSVSPYLTLTTTSQGSGPDARPSNGGALRPDMAAE 186
           ++LSVS +     T +G+    RP+  GA +PDMA++
Sbjct: 72  SILSVSQFTLYADTKKGN----RPAFTGAAKPDMASQ 104

>AVEN_MOUSE (Q9D9K3) Cell death regulator Aven|
          Length = 342

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 16/30 (53%), Positives = 17/30 (56%)
 Frame = -2

Query: 230 RPSNGGALRPDMAAEKPCGRGGGRSDRVEE 141
           R   GG LR      +P GRGGG S RVEE
Sbjct: 53  RGRGGGGLRG--GRWEPGGRGGGASTRVEE 80


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,853,968
Number of Sequences: 219361
Number of extensions: 630363
Number of successful extensions: 2265
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2265
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)