ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl09e08 |
|---|---|
| Clone Library Name | barley_pub |
>CAND1_RAT (P97536) Cullin-associated NEDD8-dissociated protein 1| (Cullin-associated and neddylation-dissociated protein 1) (p120 CAND1) (TBP-interacting protein TIP120A) (TBP-interacting protein of 120 kDa A) Length = 1230 Score = 96.3 bits (238), Expect = 2e-20 Identities = 48/133 (36%), Positives = 75/133 (56%), Gaps = 3/133 (2%) Frame = +2 Query: 2 RTNIQMIGALSRSVGYRFGPHLAEAVPLLINYCTSASENDEELRE*SLQALESFMLRCPR 181 RT IQ I A+SR G+R G +L + +PL++ +C + +D+ELRE +QA ESF+ RCP+ Sbjct: 232 RTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFC---NVDDDELREYCIQAFESFVRRCPK 288 Query: 182 DISPYCEGILNLALEYVSYDPNF---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASWK 352 ++ P+ I+N+ L+Y++YDPN+ SWK Sbjct: 289 EVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWK 348 Query: 353 VRRASAKCISAII 391 VRRA+AKC+ A++ Sbjct: 349 VRRAAAKCLDAVV 361
>CAND1_PONPY (Q5R6L5) Cullin-associated NEDD8-dissociated protein 1| (Cullin-associated and neddylation-dissociated protein 1) (p120 CAND1) Length = 1230 Score = 96.3 bits (238), Expect = 2e-20 Identities = 48/133 (36%), Positives = 75/133 (56%), Gaps = 3/133 (2%) Frame = +2 Query: 2 RTNIQMIGALSRSVGYRFGPHLAEAVPLLINYCTSASENDEELRE*SLQALESFMLRCPR 181 RT IQ I A+SR G+R G +L + +PL++ +C + +D+ELRE +QA ESF+ RCP+ Sbjct: 232 RTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFC---NVDDDELREYCIQAFESFVRRCPK 288 Query: 182 DISPYCEGILNLALEYVSYDPNF---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASWK 352 ++ P+ I+N+ L+Y++YDPN+ SWK Sbjct: 289 EVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDGDMSWK 348 Query: 353 VRRASAKCISAII 391 VRRA+AKC+ A++ Sbjct: 349 VRRAAAKCLDAVV 361
>CAND1_MOUSE (Q6ZQ38) Cullin-associated NEDD8-dissociated protein 1| (Cullin-associated and neddylation-dissociated protein 1) (p120 CAND1) Length = 1230 Score = 96.3 bits (238), Expect = 2e-20 Identities = 48/133 (36%), Positives = 75/133 (56%), Gaps = 3/133 (2%) Frame = +2 Query: 2 RTNIQMIGALSRSVGYRFGPHLAEAVPLLINYCTSASENDEELRE*SLQALESFMLRCPR 181 RT IQ I A+SR G+R G +L + +PL++ +C + +D+ELRE +QA ESF+ RCP+ Sbjct: 232 RTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFC---NVDDDELREYCIQAFESFVRRCPK 288 Query: 182 DISPYCEGILNLALEYVSYDPNF---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASWK 352 ++ P+ I+N+ L+Y++YDPN+ SWK Sbjct: 289 EVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWK 348 Query: 353 VRRASAKCISAII 391 VRRA+AKC+ A++ Sbjct: 349 VRRAAAKCLDAVV 361
>CAND1_HUMAN (Q86VP6) Cullin-associated NEDD8-dissociated protein 1| (Cullin-associated and neddylation-dissociated protein 1) (p120 CAND1) (TBP-interacting protein TIP120A) (TBP-interacting protein of 120 kDa A) Length = 1230 Score = 96.3 bits (238), Expect = 2e-20 Identities = 48/133 (36%), Positives = 75/133 (56%), Gaps = 3/133 (2%) Frame = +2 Query: 2 RTNIQMIGALSRSVGYRFGPHLAEAVPLLINYCTSASENDEELRE*SLQALESFMLRCPR 181 RT IQ I A+SR G+R G +L + +PL++ +C + +D+ELRE +QA ESF+ RCP+ Sbjct: 232 RTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFC---NVDDDELREYCIQAFESFVRRCPK 288 Query: 182 DISPYCEGILNLALEYVSYDPNF---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASWK 352 ++ P+ I+N+ L+Y++YDPN+ SWK Sbjct: 289 EVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWK 348 Query: 353 VRRASAKCISAII 391 VRRA+AKC+ A++ Sbjct: 349 VRRAAAKCLDAVV 361
>CAND2_HUMAN (O75155) Cullin-associated NEDD8-dissociated protein 2| (Cullin-associated and neddylation-dissociated protein 2) (p120 CAND2) Length = 1119 Score = 91.7 bits (226), Expect = 4e-19 Identities = 47/132 (35%), Positives = 72/132 (54%), Gaps = 2/132 (1%) Frame = +2 Query: 2 RTNIQMIGALSRSVGYRFGPHLAEAVPLLINYCTSASENDEELRE*SLQALESFMLRCPR 181 RT IQ +G++ R G+R G HL VPL+ ++C +D+ELRE LQA E+F+ +CP+ Sbjct: 142 RTLIQCLGSVGRQAGHRLGAHLDRLVPLVEDFCNL---DDDELRESCLQAFEAFLRKCPK 198 Query: 182 DISPYCEGILNLALEYVSYDP--NFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASWKV 355 ++ P+ + +L L+Y+ +DP N+ SWKV Sbjct: 199 EMGPHVPNVTSLCLQYIKHDPNYNYDSDEDEEQMETEDSEFSEQESEDEYSDDDDMSWKV 258 Query: 356 RRASAKCISAII 391 RRA+AKCI+A+I Sbjct: 259 RRAAAKCIAALI 270
>CAND2_MOUSE (Q6ZQ73) Cullin-associated NEDD8-dissociated protein 2| (Cullin-associated and neddylation-dissociated protein 2) (p120 CAND2) (TBP-interacting protein TIP120B) (TBP-interacting protein of 120 kDa B) Length = 1235 Score = 89.0 bits (219), Expect = 3e-18 Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 1/131 (0%) Frame = +2 Query: 2 RTNIQMIGALSRSVGYRFGPHLAEAVPLLINYCTSASENDEELRE*SLQALESFMLRCPR 181 RT IQ +G++ R G+R G HL VP++ +C +D+ELRE LQA E+F+ +CP+ Sbjct: 235 RTLIQCLGSVGRQAGHRLGAHLDRLVPMVEEFCNL---DDDELRESCLQAFEAFLRKCPK 291 Query: 182 DISPYCEGILNLALEYVSYDPNF-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASWKVR 358 ++ P+ + +L L+Y+ +DPN+ SWKVR Sbjct: 292 EMDPHVPNVTSLCLQYMKHDPNYDHDSDDEEQMETEDSEFSEQESEDEYSDDDDMSWKVR 351 Query: 359 RASAKCISAII 391 RA+AKC++A+I Sbjct: 352 RAAAKCMAALI 362
>CAND2_RAT (Q9R0L4) Cullin-associated NEDD8-dissociated protein 2| (Cullin-associated and neddylation-dissociated protein 2) (p120 CAND2) (TBP-interacting protein TIP120B) (TBP-interacting protein of 120 kDa B) (TBP-interacting protein b) Length = 1273 Score = 88.6 bits (218), Expect = 3e-18 Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 1/131 (0%) Frame = +2 Query: 2 RTNIQMIGALSRSVGYRFGPHLAEAVPLLINYCTSASENDEELRE*SLQALESFMLRCPR 181 RT IQ +G++ R G+R G HL +PL+ +C +D+ELRE LQA E+F+ +CP+ Sbjct: 273 RTLIQCLGSVGRQAGHRLGAHLDRLMPLVEEFCNL---DDDELRESCLQAFEAFLRKCPK 329 Query: 182 DISPYCEGILNLALEYVSYDPNF-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASWKVR 358 ++ P+ + +L L+Y+ +DPN+ SWKVR Sbjct: 330 EMDPHVPNVTSLCLQYMKHDPNYNHDSDEEEQMETEDSEFSEQESEDEYSDDDDMSWKVR 389 Query: 359 RASAKCISAII 391 RA+AKC++A+I Sbjct: 390 RAAAKCMAALI 400
>YAQ5_SCHPO (Q10105) Putative translational activator C18G6.05c (GCN1 homolog)| Length = 2670 Score = 33.9 bits (76), Expect = 0.096 Identities = 18/49 (36%), Positives = 30/49 (61%) Frame = +2 Query: 20 IGALSRSVGYRFGPHLAEAVPLLINYCTSASENDEELRE*SLQALESFM 166 + A SR +G F P+L + +PLL+ TS +N E+RE ++ A++ M Sbjct: 1426 VEAFSRILGIYFEPYLPDLLPLLL---TSFGDNANEVREATMDAVKQIM 1471
>TOR_CAEEL (Q95Q95) Target of rapamycin homolog (EC 2.7.11.1) (CeTOR) (Lethal| protein 363) Length = 2697 Score = 32.7 bits (73), Expect = 0.21 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%) Frame = +2 Query: 14 QMIGALSRSVGYRFGPHLAEAVPLLINYCTSASE--NDEELRE*SLQALESFMLRCPRDI 187 Q I + RS+G + + +P LI C A+E N LRE LQ L +F+ + Sbjct: 972 QAIVTIFRSLGDMAPLYTEQVIPRLIEVCRRATESSNRANLREFFLQQLANFVAIIRKHA 1031 Query: 188 SPYCEGILNL 217 +PY I + Sbjct: 1032 APYMPAIFTI 1041
>PIRK5_CHICK (Q5ZIB8) Phosphoinositide 3-kinase regulatory subunit 5 (PI3-kinase| regulatory subunit 5) Length = 881 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = -3 Query: 234 LTYSKARFRIPSQYGDISLGHLSIKLSRACKLYSRSSS 121 + YSK SQ+ D+ S+ LS+ACK Y +S Sbjct: 735 IAYSKTAISGRSQWNDVEKVCTSVNLSKACKKYEELAS 772
>HOLA_BUCBP (Q89AC0) DNA polymerase III delta subunit (EC 2.7.7.7)| Length = 332 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/43 (32%), Positives = 26/43 (60%) Frame = -2 Query: 262 HAIGEIRIIAYIFQSKIQNTLTIWGYISWTSEHKTLEGLQALL 134 H + I++ ++++K+ NTL+I +I S K L+ + ALL Sbjct: 180 HLNNTLNILSLVWKNKLINTLSITNFIEDCSIFKPLQWINALL 222
>HEATR_MACFA (Q9GM44) HEAT repeat-containing protein 1 (Protein BAP28)| (Fragment) Length = 958 Score = 28.5 bits (62), Expect = 4.0 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Frame = +2 Query: 59 PHLAEAVPLLINYCTSASE--NDEELRE*SLQALESFMLRCPRDISPYCEGILN 214 P L +P L+ + SE + E +L AL+ + P ISPY EGIL+ Sbjct: 544 PQLPSLMPSLLTTMKNTSELVSSEVYLLSALAALQKVVETLPHFISPYLEGILS 597
>HEATR_HUMAN (Q9H583) HEAT repeat-containing protein 1 (Protein BAP28)| Length = 2144 Score = 28.5 bits (62), Expect = 4.0 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Frame = +2 Query: 59 PHLAEAVPLLINYCTSASE--NDEELRE*SLQALESFMLRCPRDISPYCEGILN 214 P L +P L+ + SE + E +L AL+ + P ISPY EGIL+ Sbjct: 1731 PQLPSLMPSLLTTMKNTSELVSSEVYLLSALAALQKVVETLPHFISPYLEGILS 1784
>SPD2_PEA (Q9ZTR0) Spermidine synthase 2 (EC 2.5.1.16) (Putrescine| aminopropyltransferase 2) (SPDSY 2) Length = 342 Score = 28.1 bits (61), Expect = 5.3 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +3 Query: 102 QVHQKMMKSSVSRACRPSRVLCSDVQEIYPHI 197 ++ +K SV+RA RP V+C+ + I+ H+ Sbjct: 218 ELFEKPFFQSVARALRPGGVMCTQAESIWLHM 249
>SPD1_DATST (Q96556) Spermidine synthase 1 (EC 2.5.1.16) (Putrescine| aminopropyltransferase 1) (SPDSY 1) Length = 308 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +3 Query: 102 QVHQKMMKSSVSRACRPSRVLCSDVQEIYPHI 197 ++ +K SV+RA RP V+C+ + I+ H+ Sbjct: 183 ELFEKPFFESVARALRPGGVVCTQAESIWLHM 214
>TGM2_BOVIN (P51176) Protein-glutamine gamma-glutamyltransferase 2 (EC| 2.3.2.13) (Tissue transglutaminase) (TGase C) (TGC) (TG(C)) (Tranglutaminase-2) Length = 687 Score = 27.7 bits (60), Expect = 6.9 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 11/86 (12%) Frame = +2 Query: 26 ALSRSVGYRFGPHLAEAVPLLIN-YCTSAS---ENDEELRE*SL-------QALESFMLR 172 +L S GY+ + LL N +C + + ++DEE +E L Q F+ Sbjct: 118 SLEASTGYQGSSFMLGQFTLLFNSWCPADAVYLDSDEERQEYVLTQQGFIYQGSAKFIKN 177 Query: 173 CPRDISPYCEGILNLALEYVSYDPNF 250 P + + EGIL++ L + +P F Sbjct: 178 IPWNFGQFEEGILDICLMLLDVNPKF 203
>SPD1_ORYSA (Q9SMB1) Spermidine synthase 1 (EC 2.5.1.16) (Putrescine| aminopropyltransferase 1) (SPDSY 1) Length = 323 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +3 Query: 102 QVHQKMMKSSVSRACRPSRVLCSDVQEIYPHI 197 ++ +K SV+RA RP V+C+ + I+ H+ Sbjct: 198 ELFEKPFFQSVARALRPGGVVCTQAESIWLHM 229
>RL16_YERPS (Q664S8) 50S ribosomal protein L16| Length = 136 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/63 (26%), Positives = 29/63 (46%) Frame = -3 Query: 222 KARFRIPSQYGDISLGHLSIKLSRACKLYSRSSSSFSDALVQ*FMSKGTASARCGPNRYP 43 K R R +Q D+S G +K C+L +R + A+ + +G R P++ Sbjct: 14 KGRNRGLAQGTDVSFGEFGLKACGRCRLTARQIEAARRAMTRAIKRQGKVWIRVFPDKPI 73 Query: 42 TER 34 TE+ Sbjct: 74 TEK 76
>RL16_YERPE (Q8ZJA5) 50S ribosomal protein L16| Length = 136 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/63 (26%), Positives = 29/63 (46%) Frame = -3 Query: 222 KARFRIPSQYGDISLGHLSIKLSRACKLYSRSSSSFSDALVQ*FMSKGTASARCGPNRYP 43 K R R +Q D+S G +K C+L +R + A+ + +G R P++ Sbjct: 14 KGRNRGLAQGTDVSFGEFGLKACGRCRLTARQIEAARRAMTRAIKRQGKVWIRVFPDKPI 73 Query: 42 TER 34 TE+ Sbjct: 74 TEK 76
>APAF_HUMAN (O14727) Apoptotic protease-activating factor 1 (Apaf-1)| Length = 1248 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/25 (48%), Positives = 19/25 (76%) Frame = -2 Query: 229 IFQSKIQNTLTIWGYISWTSEHKTL 155 IFQS+ Q+ T+W +I +T++ KTL Sbjct: 995 IFQSRFQHKKTVW-HIQFTADEKTL 1018
>SPD1_PEA (Q9ZTR1) Spermidine synthase 1 (EC 2.5.1.16) (Putrescine| aminopropyltransferase 1) (SPDSY 1) Length = 334 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +3 Query: 102 QVHQKMMKSSVSRACRPSRVLCSDVQEIYPHI 197 ++ +K SV+RA RP V+C+ + I+ H+ Sbjct: 210 ELFEKPFFESVARALRPGGVVCTQAESIWLHM 241
>SWRB_BACSU (P40405) Swarming motility protein swrB| Length = 167 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 4/47 (8%) Frame = +2 Query: 83 LLINYCTSASENDEELRE*SLQALESFMLRCP----RDISPYCEGIL 211 L+ N +SAS++DEE ++ LQ E++ R P ++ + EG++ Sbjct: 62 LIENKASSASQSDEESQKSGLQTSETYQERDPVQEAENLPEHIEGLI 108 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,576,591 Number of Sequences: 219361 Number of extensions: 807608 Number of successful extensions: 2096 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2064 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2086 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
