>KSA_PEA (O04408) Ent-kaurene synthase A, chloroplast precursor (EC|
           5.5.1.13) (Ent-copalyl diphosphate synthase) (KSA)
          Length = 801

 Score = 35.8 bits (81), Expect = 0.025
 Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 10/85 (11%)
 Frame = +3

Query: 186 QHRRCGVVLSSKSPPYPDV--------EVGERKVHEYIRHTDEPSEMRQ--MIDAIRTTL 335
           + +RC  +  S++  Y  V        ++ E  V + I   DE  +  +  +++ I++ L
Sbjct: 39  KEKRCRAISKSRTQEYEGVFQTNVATLKLSEINVEDVIVIDDEEEQDIRVGLVNKIKSIL 98

Query: 336 ASLGDDETSMSVSAYDTALVALVKN 410
           +SL D E  +++SAYDTA VALV++
Sbjct: 99  SSLEDGE--ITISAYDTAWVALVED 121

>SAHH_AERPE (Q9YEF2) Adenosylhomocysteinase (EC 3.3.1.1)|
           (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
          Length = 416

 Score = 31.2 bits (69), Expect = 0.61
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 342 MTPESFLWHRSSVASRSVHPCVVCTHELSVHPLLHPDM 229
           MTPE + W  S+VA R   P +V      +H LLH +M
Sbjct: 103 MTPEEYKWALSTVAGR--EPDIVIDDGADLHVLLHEEM 138

>CPO_DROME (Q01617) Protein couch potato|
          Length = 738

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 29/92 (31%), Positives = 35/92 (38%), Gaps = 12/92 (13%)
 Frame = -3

Query: 375 LKHSLTSH----HHPMTPESFLWHR----SSVASRSVHPCVVCTHELSVHPLLHPDMVGI 220
           L H LT H      P  PE  LWH     S+ A+  +       H   VHP LHP +   
Sbjct: 555 LMHPLTGHLGGPFFPGGPE--LWHHPLAYSAAAAAELPGAAALQHATLVHPALHPQVPTQ 612

Query: 219 C*IARPHIVDAESAGAG----KAVAMAPPSGG 136
             +   H   A   GA      A A A  +GG
Sbjct: 613 MTMPPHHQTTAIHPGAAMAHMAAAAAAAAAGG 644

>NODB_RHILP (P24150) Chitooligosaccharide deacetylase (EC 3.5.1.-) (Nodulation|
           protein B)
          Length = 229

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 267 HELSVHPLLHPDMVGIC*IARPHIVDAESAGAGKAVAMAPPSGGRA 130
           HE++ H + HPD+        P  V  +     +A+ MA P GG A
Sbjct: 75  HEVANHTMTHPDLSD----CEPRRVQRQILETNRAIKMASPGGGAA 116

>KSA_ARATH (Q38802) Ent-kaurene synthase A, chloroplast precursor (EC|
           5.5.1.13) (Ent-copalyl diphosphate synthase) (KSA)
           (AtCPS)
          Length = 802

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 14/34 (41%), Positives = 25/34 (73%)
 Frame = +3

Query: 303 RQMIDAIRTTLASLGDDETSMSVSAYDTALVALV 404
           ++ + +++T L +L D E  +++SAYDTA VAL+
Sbjct: 95  KEAVKSVKTILRNLTDGE--ITISAYDTAWVALI 126

>YKD3A_YEAST (Q86ZR7) Hypothetical protein YKL033W-A|
          Length = 236

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -1

Query: 203 PTSSMLRVQVQGKPSPWLRRRVVEHWNMP 117
           P +  +++++QG P P   +RV+EH+ +P
Sbjct: 40  PLTWDVKIKLQGLPGPEAGKRVIEHYKLP 68

>G3P1_GLORO (O16027) Glyceraldehyde-3-phosphate dehydrogenase 1 (EC 1.2.1.12)|
           (GAPDH-1) (Fragment)
          Length = 324

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 187 SIDDVGSCYLANPHHIRM*KWVNGKF 264
           SI D G+C   NPH +++  W + +F
Sbjct: 299 SIFDAGACISLNPHFVKLVSWYDNEF 324

>M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820 (ORF170)|
          Length = 170

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
 Frame = -2

Query: 154 GSAVGWS-----STGTCRNAAVNVSILCLRSLFLPPSCVC 50
           G ++ W      S G  +   + +++L LR LF+ P CVC
Sbjct: 131 GQSINWMFKMHFSMGIFKKKFICINLLVLRILFIHPMCVC 170

>PYR1_SCHPO (Q09794) Protein ura1 [Includes: Glutamine-dependent|
           carbamoyl-phosphate synthase (EC 6.3.5.5); Aspartate
           carbamoyltransferase (EC 2.1.3.2)]
          Length = 2244

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 133 STTRRR--SHGDGFPCTCTLSIDDVGSCYLANPHH 231
           STT+ +  + G   PCTC +S    G CY+ + +H
Sbjct: 351 STTKMKFGNRGHNIPCTCMIS----GRCYITSQNH 381

>GLMM_LEIXX (Q6AD28) Phosphoglucosamine mutase (EC 5.4.2.10)|
          Length = 453

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
 Frame = +3

Query: 120 HVPVLDHPTAEPWRRLSLHLHSQ---HRRCGVVLSSKSPPYPDVEVGERKVHEYIRHTDE 290
           HV + D  T        LHL S+    R+    L+     YP V V  R V  +  H+DE
Sbjct: 335 HVIMSDFATTGDGILTGLHLLSEMARQRKTLAELAQAMTVYPQVMVNVRGVDHHSVHSDE 394

Query: 291 PSEMRQMIDAIRTTLASLG 347
              +R  ++A+   L   G
Sbjct: 395 --LLRSAVEAVEAALGDSG 411

>MC4R_MOUSE (P56450) Melanocortin receptor 4 (MC4-R)|
          Length = 332

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 8/46 (17%)
 Frame = -3

Query: 360 TSHHHPMTPESFLWHRSSV-----ASRSV---HPCVVCTHELSVHP 247
           ++HHH M     LW+RSS      AS S+   HP   C  +L V P
Sbjct: 3   STHHHGMYTSLHLWNRSSYGLHSNASESLGKGHPDGGCYEQLFVSP 48

>PTN14_HUMAN (Q15678) Tyrosine-protein phosphatase non-receptor type 14 (EC|
           3.1.3.48) (Protein-tyrosine phosphatase pez)
          Length = 1187

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 189 HRRCGVVLSSKSPPYPDVEVGERKVHEYIRHTDEPSEMRQMIDAIRT 329
           HR   +++ S  P  PD E   R++   I HTD  S+  + ++ I T
Sbjct: 429 HRHSAIIVPSYRPT-PDYETVMRQMKRGILHTDSQSQSLRNLNIINT 474

>CCD39_MOUSE (Q9D5Y1) Coiled-coil domain-containing protein 39|
          Length = 937

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = +3

Query: 240 VEVGERKVH----EYIRHTDEPSEMRQMIDAIRTTLASLGDD 353
           + V ERKV     +Y RH    S+++  +D ++TTL     D
Sbjct: 283 ISVAERKVSKCRMDYQRHEGNRSQLKDELDTLKTTLNRTSSD 324

>LTE1_YEAST (P07866) Low temperature essential protein|
          Length = 1435

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 210 LSSKSPPYPDVEVGERKVHEYIRHTDEPS 296
           LSS SPP   V    RKV   + +TD P+
Sbjct: 663 LSSSSPPRDTVTKKSRKVRNIVNNTDSPT 691

>Y4WA_RHISN (P55679) Hypothetical zinc protease y4wA (EC 3.4.99.-)|
          Length = 512

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +3

Query: 126 PVLDHPTAEPWRRLSLHLHSQHRRCGVVLS 215
           P   HPTAEPWRR          R G   S
Sbjct: 12  PAPGHPTAEPWRRRKRWYSPSDGRAGTARS 41

>NOS2_CANFA (O62699) Nitric oxide synthase, inducible (EC 1.14.13.39) (NOS type|
           II) (Inducible NO synthase) (Inducible NOS) (iNOS)
          Length = 1154

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 187 SIDDVGSCYLANPHHIRM*KWVNGKFMSTYDTRMNRARCD 306
           S+D + +  L+ P H+R+  W NG  M+  DT  ++A+ D
Sbjct: 67  SLDKLHATPLSRPQHVRIKNWGNG--MTFQDTLHHKAKGD 104

>HES3_RAT (Q04667) Transcription factor HES-3 (Hairy and enhancer of split 3)|
          Length = 175

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +2

Query: 110 CIPACSSARPPDGGAMATAFPAPALSASTMWGRAI*QIPTISGCRS 247
           C+PA  +  PP GG+ +   P P L         I   P  S C++
Sbjct: 117 CLPAIWAPGPPAGGSQSPQSPFPPLGGLLESSTGILAPPPASNCQA 162

>POLN_ONNVG (P13886) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
            [Contains: P123; mRNA capping enzyme nsP1 (EC 2.1.1.-)
            (EC 2.7.7.-) (Nonstructural protein 1);
            Protease/triphosphatase/NTPase/helicase nsP2 (EC
            3.4.22.-) (EC 3.1.3.33) (EC 3.6.1.
          Length = 2514

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 381  RRLKHSLTSHHHPMTPESFLWHRSSVASRSVHPCVVCTHEL 259
            RRL HSL + HH +  E   W  + ++    H  +V  H L
Sbjct: 1141 RRLPHSLVAEHHSVRGERMEWLVNKISGH--HMLLVSGHNL 1179

>ESR2_ANGJA (O13012) Estrogen receptor beta (ER-beta)|
          Length = 573

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 197 SSMLRVQVQGKPSPWLRRRVVEHWNMPECSGKC 99
           SS +      +PSPW +    +    P CSG+C
Sbjct: 531 SSRMSASYSSQPSPWSQAAQSQPGPPPSCSGEC 563

>HYPF2_RALEU (O07451) Carbamoyltransferase hypF2 (EC 2.1.3.-) (Carbamoyl|
           phosphate-converting enzyme hypF2) ([NiFe]-hydrogenase
           maturation factor hypF2) (Hydrogenase maturation protein
           hypF2)
          Length = 806

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 26/92 (28%), Positives = 38/92 (41%)
 Frame = +3

Query: 45  G*HTQEGGRKRDRRQRMLTFTAAFRHVPVLDHPTAEPWRRLSLHLHSQHRRCGVVLSSKS 224
           G  T  GGR+R    R L    A   +P  D    EPWR  +  LH+  R  G  +  + 
Sbjct: 551 GGETAAGGRRRLLAPRSL----ARLPLPGGDRAAREPWRMAAAALHAMGR--GEEIEGRF 604

Query: 225 PPYPDVEVGERKVHEYIRHTDEPSEMRQMIDA 320
           P  P   +  R + + + +    S M +  DA
Sbjct: 605 PRQPGAPMVNRMLAQRL-NAPLSSSMGRWFDA 635

>TRUB_MESFL (Q6F1I4) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 286

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 13/57 (22%), Positives = 28/57 (49%)
 Frame = +3

Query: 201 GVVLSSKSPPYPDVEVGERKVHEYIRHTDEPSEMRQMIDAIRTTLASLGDDETSMSV 371
           G+    + P Y  +++  +K++EY R        +++I     +L    ++E SM+V
Sbjct: 110 GLAYEQEPPMYSAIKIDGKKLYEYARENQVVKVNKRLIKINSLSLDKYENNEISMTV 166

>Y1R1_DROME (P16424) Hypothetical 50 kDa protein in type I retrotransposable|
           element R1DM (ORF 1)
          Length = 471

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = -3

Query: 315 RSSVASRSVHPCVVCTHELSVHPLLHPDMVGIC*IARPHIVDAESAGAGKAVAMAPPSGG 136
           RS +AS+S  P       L+ + +  P+ VG+   A   + DA +A +  A   APP+  
Sbjct: 47  RSHLASKSSAPTQAKLVALASNGV--PEPVGVLEEAFSSLEDARAATSNAANDAAPPAAA 104

Query: 135 RALEH 121
            A++H
Sbjct: 105 PAVDH 109

>NODB_RHIME (P02963) Chitooligosaccharide deacetylase (EC 3.5.1.-) (Nodulation|
           protein B)
          Length = 217

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 267 HELSVHPLLHPDMVGIC*IARPHIVDAESAGAGKAVAMAPP 145
           HE++ H + HPD+        PH V+ E   A +A+  A P
Sbjct: 74  HEVANHTMTHPDLS----TCGPHEVEREIVEASEAIIAACP 110

>MURD_SILPO (Q5LU71) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 466

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 100 HLPLHSGMFQCSTTRRRSHGDGFPCTCTLSIDDVGSCYLA 219
           HL  H GM      +RR   +G P    + +D+    YLA
Sbjct: 200 HLDRHGGMGGYFAAKRRLFAEGGPDRAVIGVDESEGLYLA 239

>KSB_CUCMA (Q39548) Ent-kaurene synthase B, chloroplast precursor (EC|
           4.2.3.19) (KSB)
          Length = 789

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +3

Query: 351 DETSMSVSAYDTALVALV 404
           D+  +SVSAYDTA VA+V
Sbjct: 53  DKVELSVSAYDTAWVAMV 70

>ZN142_HUMAN (P52746) Zinc finger protein 142 (HA4654)|
          Length = 1687

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
 Frame = -3

Query: 384 CRR---LKHSLTSHHHPMTPES-FLWHRSSVASRSVHPCVVCTHELSVHPLLHPDMVGIC 217
           C+R   L+  + S HHP TP   +  H  S  SR  H   V +HE   H  L      +C
Sbjct: 521 CKRKYELQKHMASQHHPGTPSPLYPCHYCSYQSR--HKQAVLSHENCKHTRLREFHCALC 578


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,435,260
Number of Sequences: 219361
Number of extensions: 1322600
Number of successful extensions: 4139
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 3973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4139
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)