ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl09e07 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT009723.4| Mouse DNA sequence from clone RP23-12L5 on chromosome 9, complete sequence Length = 210030 Score = 46.1 bits (23), Expect = 0.089 Identities = 23/23 (100%) Strand = Plus / Plus Query: 56 acaagagggaggaagaaagagag 78 ||||||||||||||||||||||| Sbjct: 122897 acaagagggaggaagaaagagag 122919
>gb|AC129317.3| Mus musculus BAC clone RP23-443L14 from chromosome 9, complete sequence Length = 210950 Score = 46.1 bits (23), Expect = 0.089 Identities = 23/23 (100%) Strand = Plus / Minus Query: 56 acaagagggaggaagaaagagag 78 ||||||||||||||||||||||| Sbjct: 109849 acaagagggaggaagaaagagag 109827
>emb|CR936368.12| M.truncatula DNA sequence from clone MTH2-4O11 on chromosome 3, complete sequence Length = 140262 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 54 acacaagagggaggaagaaagagaga 79 ||||||||||||| |||||||||||| Sbjct: 4796 acacaagagggagaaagaaagagaga 4821
>gb|AC164597.11| Mus musculus chromosome 15, clone RP23-108H23, complete sequence Length = 190235 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 atcactgagccaacatctatc 21 ||||||||||||||||||||| Sbjct: 62750 atcactgagccaacatctatc 62730
>gb|AC122036.3| Mus musculus BAC clone RP24-420C18 from chromosome 8, complete sequence Length = 209062 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 cactgagccaacatctatccc 23 ||||||||||||||||||||| Sbjct: 22385 cactgagccaacatctatccc 22405
>emb|BX510337.13| Zebrafish DNA sequence from clone DKEY-27L20 in linkage group 9, complete sequence Length = 170615 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 agagggaggaagaaagagaga 79 ||||||||||||||||||||| Sbjct: 121716 agagggaggaagaaagagaga 121736
>emb|CR381640.8| Human DNA sequence from clone RP13-854E9 on chromosome X, complete sequence Length = 63682 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 59 agagggaggaagaaagagaga 79 ||||||||||||||||||||| Sbjct: 24553 agagggaggaagaaagagaga 24533
>emb|BX247953.2| Mouse DNA sequence from clone RP23-289L21 on chromosome 4 Contains a novel gene, a novel pseudogene, the Rrm2-ps1 gene for ribonucleotide reductase M2 pseudogene 1 and a heterogeneous nuclear ribonucleoprotein D (Hnrpd) pseudogene, complete sequence Length = 159473 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 agagggaggaagaaagagaga 79 ||||||||||||||||||||| Sbjct: 74261 agagggaggaagaaagagaga 74281
>emb|AL646044.13| Mouse DNA sequence from clone RP23-269O5 on chromosome 11, complete sequence Length = 197473 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 59 agagggaggaagaaagagaga 79 ||||||||||||||||||||| Sbjct: 133080 agagggaggaagaaagagaga 133060
>emb|BX004859.8| Human DNA sequence from clone RP13-468P17 on chromosome X, complete sequence Length = 63432 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 59 agagggaggaagaaagagaga 79 ||||||||||||||||||||| Sbjct: 25470 agagggaggaagaaagagaga 25450
>gb|AC005725.1|AC005725 Homo sapiens chromosome 17, clone hRPK.680_C_21, complete sequence Length = 197915 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 168 tccctgcacctgcactctcag 188 ||||||||||||||||||||| Sbjct: 50728 tccctgcacctgcactctcag 50748
>gb|AC126020.4| Mus musculus BAC clone RP24-364O7 from 8, complete sequence Length = 179287 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 cactgagccaacatctatccc 23 ||||||||||||||||||||| Sbjct: 31578 cactgagccaacatctatccc 31558
>gb|AC165289.2| Mus musculus BAC clone RP23-467L11 from chromosome 17, complete sequence Length = 193418 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 agagggaggaagaaagagag 78 |||||||||||||||||||| Sbjct: 44322 agagggaggaagaaagagag 44341
>ref|NM_003936.3| Homo sapiens cyclin-dependent kinase 5, regulatory subunit 2 (p39) (CDK5R2), mRNA Length = 2495 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 agagggaggaagaaagagag 78 |||||||||||||||||||| Sbjct: 1673 agagggaggaagaaagagag 1654
>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete sequence Length = 1783081 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 tgcattccggcatgttccag 129 |||||||||||||||||||| Sbjct: 1496691 tgcattccggcatgttccag 1496710
>gb|AC115865.9| Mus musculus chromosome 3, clone RP24-314I8, complete sequence Length = 200362 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 190684 gagggaggaagaaagagaga 190665
>gb|AC110381.5| Mus musculus BAC clone RP24-198I16 from chromosome 10, complete sequence Length = 166554 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 123876 gagggaggaagaaagagaga 123895
>gb|AC137680.10| Mus musculus chromosome 13, clone RP23-454P19, complete sequence Length = 197663 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 14880 gagggaggaagaaagagaga 14899
>gb|AC148334.3| Mus musculus BAC clone RP23-213L20 from chromosome 13, complete sequence Length = 207106 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 21332 gagggaggaagaaagagaga 21313
>gb|AC122228.4| Mus musculus BAC clone RP23-131N12 from chromosome 12, complete sequence Length = 202970 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 98826 gagggaggaagaaagagaga 98807
>emb|CT025525.8| Mouse DNA sequence from clone RP23-285C6 on chromosome 14, complete sequence Length = 194278 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 137235 gagggaggaagaaagagaga 137254
>emb|CR352290.10| Zebrafish DNA sequence from clone DKEY-107G12 in linkage group 18, complete sequence Length = 137797 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 cgtcattgggtgatgatgag 356 |||||||||||||||||||| Sbjct: 21783 cgtcattgggtgatgatgag 21802
>ref|XM_570545.1| Cryptococcus neoformans var. neoformans JEC21 transcription factor (CND05520) partial mRNA Length = 2919 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 tgcattccggcatgttccag 129 |||||||||||||||||||| Sbjct: 2446 tgcattccggcatgttccag 2465
>gb|AC125467.4| Mus musculus BAC clone RP24-91P24 from chromosome 8, complete sequence Length = 200304 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 141505 gagggaggaagaaagagaga 141486
>gb|AC133646.4| Mus musculus BAC clone RP23-254F11 from chromosome 18, complete sequence Length = 209764 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 63400 gagggaggaagaaagagaga 63381
>gb|BC009910.2| Homo sapiens cyclin-dependent kinase 5, regulatory subunit 2 (p39), mRNA (cDNA clone IMAGE:2820025), with apparent retained intron Length = 1064 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 agagggaggaagaaagagag 78 |||||||||||||||||||| Sbjct: 728 agagggaggaagaaagagag 709
>gb|AC121771.3| Mus musculus BAC clone RP23-348H21 from chromosome 3, complete sequence Length = 190309 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 128508 gagggaggaagaaagagaga 128527
>gb|AC113941.16| Mus musculus chromosome 8, clone RP23-161H3, complete sequence Length = 194913 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 ccaacatctatcccatcaaa 29 |||||||||||||||||||| Sbjct: 143845 ccaacatctatcccatcaaa 143826
>gb|AC115299.4| Mus musculus BAC clone RP23-444O19 from 13, complete sequence Length = 201296 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 100161 gagggaggaagaaagagaga 100180
>gb|AC101663.10| Mus musculus chromosome 1, clone RP23-37L1, complete sequence Length = 192592 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 113273 gagggaggaagaaagagaga 113292
>emb|CR759881.16| Zebrafish DNA sequence from clone CH211-165K16 in linkage group 18, complete sequence Length = 123400 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 36347 gagggaggaagaaagagaga 36366
>gb|AC153015.4| Mus musculus BAC clone RP23-200I3 from chromosome 8, complete sequence Length = 232038 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 161608 gagggaggaagaaagagaga 161627
>emb|Z97629.1|HS128N22 Human DNA sequence from clone RP1-128N22 on chromosome Xq25-26.3, complete sequence Length = 98902 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 65857 gagggaggaagaaagagaga 65838
>emb|AL162259.12| Human DNA sequence from clone RP3-405J11 on chromosome 1p34.1-34.3, complete sequence Length = 66118 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 38606 gagggaggaagaaagagaga 38587
>gb|AC118487.4| Rattus norvegicus 2 BAC CH230-285C2 (Children's Hospital Oakland Research Institute) complete sequence Length = 177865 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 agagggaggaagaaagagag 78 |||||||||||||||||||| Sbjct: 168461 agagggaggaagaaagagag 168442
>gb|AC161755.3| Mus musculus BAC clone RP24-363L9 from chromosome 16, complete sequence Length = 195244 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 8132 gagggaggaagaaagagaga 8113
>emb|AL669947.14| Mouse DNA sequence from clone RP23-434D24 on chromosome 1 Contains two novel genes and two CpG islands, complete sequence Length = 102304 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 37598 gagggaggaagaaagagaga 37617
>gb|BC041771.1| Homo sapiens cyclin-dependent kinase 5, regulatory subunit 2 (p39), mRNA (cDNA clone MGC:26409 IMAGE:4818320), complete cds Length = 2516 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 agagggaggaagaaagagag 78 |||||||||||||||||||| Sbjct: 1694 agagggaggaagaaagagag 1675
>emb|AL596122.14| Mouse DNA sequence from clone RP23-320E6 on chromosome 11 Contains the Taf15 gene for TAF15 RNA polymerase II TATA box binding protein (TBP)-associated factor, two novel genes, the Ccl5, Ccl9, Ccl6, Ccl3 and Ccl4 genes for chemokine (C-C motif) ligand 5, 9, 6, 3 and 4, a ribosomal protein L9 (Rpl9) pseudogene, three extracellular proteinase inhibitor (Expi) pseudogene and an H+ transporting mitochondrial F1F0 complex ATP synthase subunit e (Atp5k) pseudogene,, complete sequence Length = 211873 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 58944 gagggaggaagaaagagaga 58963
>emb|BX548034.14| Zebrafish DNA sequence from clone DKEY-106M16 in linkage group 1, complete sequence Length = 199490 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 cgtcattgggtgatgatgag 356 |||||||||||||||||||| Sbjct: 10948 cgtcattgggtgatgatgag 10929
>gb|AC155291.3| Mus musculus BAC clone RP24-439M20 from chromosome 12, complete sequence Length = 185156 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 32666 gagggaggaagaaagagaga 32647
>emb|AL974309.17| Zebrafish DNA sequence from clone DKEY-29D5 in linkage group 1, complete sequence Length = 214332 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 cgtcattgggtgatgatgag 356 |||||||||||||||||||| Sbjct: 171834 cgtcattgggtgatgatgag 171815
>dbj|AK128197.1| Homo sapiens cDNA FLJ46325 fis, clone TESTI4043371 Length = 4250 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 333 gagggaggaagaaagagaga 314
>emb|CR614750.1| full-length cDNA clone CS0DF024YK06 of Fetal brain of Homo sapiens (human) Length = 1787 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 agagggaggaagaaagagag 78 |||||||||||||||||||| Sbjct: 1005 agagggaggaagaaagagag 986
>gb|AC097369.2| Homo sapiens chromosome 3 clone RP11-328N12, complete sequence Length = 203773 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 18173 gagggaggaagaaagagaga 18154
>dbj|AB051897.1| Mus musculus Scya6, Scya9, Scya16-ps, Scya5 genes for small inducible cytokine A6 precursor, small inducible cytokine A9 precursor, Scya16 pseudogene, small inducible cytokine A5 precursor, complete cds Length = 122436 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 99849 gagggaggaagaaagagaga 99830
>gb|AC103792.2| Homo sapiens chromosome 11, clone CTD-2384B9, complete sequence Length = 115626 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 59192 gagggaggaagaaagagaga 59211
>gb|AC107992.3| Homo sapiens chromosome 15, clone RP11-150L8, complete sequence Length = 149015 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 6233 gagggaggaagaaagagaga 6214
>gb|AC160395.2| Mus musculus BAC clone RP23-36C19 from chromosome 12, complete sequence Length = 207840 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 33556 gagggaggaagaaagagaga 33575
>gb|AC174233.4| Pan troglodytes BAC clone CH251-560K10 from chromosome unknown, complete sequence Length = 179813 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 87096 gagggaggaagaaagagaga 87077
>gb|AC006122.24| Homo sapiens 12 BAC RP11-264F23 (Roswell Park Cancer Institute Human Bac Library) complete sequence Length = 127957 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 84565 gagggaggaagaaagagaga 84546
>gb|AC159282.2| Mus musculus BAC clone RP23-329M17 from chromosome 12, complete sequence Length = 210571 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 190624 gagggaggaagaaagagaga 190643
>gb|AC148704.1| Macaca mulatta Major Histocompatibility Complex BAC MMU337E21, complete sequence Length = 147539 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 131684 gagggaggaagaaagagaga 131665
>gb|AC120549.22| Mus musculus chromosome 1, clone RP23-172L16, complete sequence Length = 210516 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 agagggaggaagaaagagag 78 |||||||||||||||||||| Sbjct: 195533 agagggaggaagaaagagag 195514
>gb|AC022740.4|AC022740 Homo sapiens chromosome 15, clone RP11-617D22, complete sequence Length = 162482 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 44477 gagggaggaagaaagagaga 44458
>emb|BX511156.5| Zebrafish DNA sequence from clone DKEY-1M1 in linkage group 2, complete sequence Length = 158656 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 cgtcattgggtgatgatgag 356 |||||||||||||||||||| Sbjct: 61634 cgtcattgggtgatgatgag 61615
>dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partial and complete cds Length = 3284914 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 1495843 gagggaggaagaaagagaga 1495862
>gb|AC115050.23| Mus musculus chromosome 3, clone RP24-338K10, complete sequence Length = 163265 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 68647 gagggaggaagaaagagaga 68628
>gb|AC097468.3| Homo sapiens BAC clone RP11-33O4 from 2, complete sequence Length = 169741 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 agagggaggaagaaagagag 78 |||||||||||||||||||| Sbjct: 40986 agagggaggaagaaagagag 40967
>gb|AC092567.4| Homo sapiens BAC clone CTD-2010B19 from 2, complete sequence Length = 163496 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 88308 gagggaggaagaaagagaga 88327
>emb|BX511124.5| Zebrafish DNA sequence from clone CH211-260P9 in linkage group 18, complete sequence Length = 149227 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 86481 gagggaggaagaaagagaga 86500
>emb|BX322593.12| Zebrafish DNA sequence from clone CH211-249E14 in linkage group 2, complete sequence Length = 82337 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 cgtcattgggtgatgatgag 356 |||||||||||||||||||| Sbjct: 52933 cgtcattgggtgatgatgag 52914
>dbj|AP003438.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1458E12 Length = 145886 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 aagagggaggaagaaagaga 77 |||||||||||||||||||| Sbjct: 45592 aagagggaggaagaaagaga 45573
>gb|L42167.1|MUSSEQAA Mus musculus (clone R24) rds gene, partial cds Length = 16390 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 agagggaggaagaaagagag 78 |||||||||||||||||||| Sbjct: 4912 agagggaggaagaaagagag 4893
>gb|AC139244.4| Mus musculus BAC clone RP23-324J8 from 16, complete sequence Length = 209201 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 28653 gagggaggaagaaagagaga 28672
>gb|AC147476.3| Mus musculus BAC clone RP23-132H10 from 3, complete sequence Length = 197405 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 145993 gagggaggaagaaagagaga 145974
>gb|DQ307839.1| Homo sapiens cyclin-dependent kinase 5, regulatory subunit 2 (p39) (CDK5R2) gene, complete cds Length = 6091 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 agagggaggaagaaagagag 78 |||||||||||||||||||| Sbjct: 3530 agagggaggaagaaagagag 3511
>dbj|AP001029.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-861E21, complete sequence Length = 209897 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 48832 gagggaggaagaaagagaga 48851
>gb|AC102108.12| Mus musculus chromosome 3, clone RP23-100J23, complete sequence Length = 216506 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 53487 gagggaggaagaaagagaga 53468
>gb|AC170807.2| Mus musculus BAC clone RP23-374I2 from chromosome 17, complete sequence Length = 208318 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 agagggaggaagaaagagag 78 |||||||||||||||||||| Sbjct: 181196 agagggaggaagaaagagag 181215
>gb|AC164092.3| Mus musculus BAC clone RP23-366E4 from chromosome 9, complete sequence Length = 203636 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 74653 gagggaggaagaaagagaga 74672
>emb|AL929398.4| Mouse DNA sequence from clone RP24-315P22 on chromosome 11, complete sequence Length = 64491 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 49892 gagggaggaagaaagagaga 49911
>emb|AL807402.1|CNS08CA6 Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6) clone 437H9 of library RPCI-23 from chromosome 11 of strain C57Bl/6 of Mus musculus (mouse) Length = 205701 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 189476 gagggaggaagaaagagaga 189495
>emb|AL645477.8| Mouse DNA sequence from clone RP23-155L18 on chromosome X, complete sequence Length = 189131 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gagggaggaagaaagagaga 79 |||||||||||||||||||| Sbjct: 22559 gagggaggaagaaagagaga 22540 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,212,544 Number of Sequences: 3902068 Number of extensions: 3212544 Number of successful extensions: 64253 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64066 Number of HSP's gapped (non-prelim): 187 length of query: 410 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 388 effective length of database: 17,147,199,772 effective search space: 6653113511536 effective search space used: 6653113511536 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
