ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl09e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RV167_YEAST (P39743) Reduced viability upon starvation protein 167 29 3.4

>RV167_YEAST (P39743) Reduced viability upon starvation protein 167|
          Length = 482

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +3

Query: 45  RRKQSLATAV--PVTGXXXXXXXXXXXXXXXXLYIASTSASASPQGRGEPEHARSHASQP 218
           RRK  +ATA   PV+G                 Y  +T+ S +P G G    A S+A+QP
Sbjct: 288 RRKYGVATAEGSPVSGASSGVGYGAG-------YDPATATSPTPTGYGYGAAAPSYAAQP 340

Query: 219 AA 224
           AA
Sbjct: 341 AA 342


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.309    0.122    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,717,560
Number of Sequences: 219361
Number of extensions: 321273
Number of successful extensions: 692
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 80,573,946
effective HSP length: 79
effective length of database: 63,244,427
effective search space used: 1517866248
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
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