ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl09e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC148176.11| Medicago truncatula clone mth2-3j15, complete se... 38 1.0
2gb|AC079178.20| Homo sapiens Xp BAC RP11-702C7 (Roswell Park Can... 38 1.0
3gb|AY277973.1| Takifugu rubripes transcription factor Sox5 (Sox5... 36 4.0
4gb|AC092100.5| Homo sapiens BAC clone RP11-666G4 from 7, complet... 36 4.0
5emb|AL031885.3|HS510B21 Human DNA sequence from clone RP3-510B21... 36 4.0
6gb|AC068909.31| Mus musculus BAC Clone 407f20 RPCI-23, complete ... 36 4.0
7gb|AC149518.2| Xenopus tropicalis clone CH216-59A18, complete se... 36 4.0
8gb|M63707.1|MUSKAPG Mouse kidney androgen-regulated protein (KAP... 36 4.0

>gb|AC148176.11| Medicago truncatula clone mth2-3j15, complete sequence
          Length = 119267

 Score = 38.2 bits (19), Expect = 1.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 1     aaaaatccaataccacatt 19
             |||||||||||||||||||
Sbjct: 9993  aaaaatccaataccacatt 10011



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>gb|AC079178.20| Homo sapiens Xp BAC RP11-702C7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 114665

 Score = 38.2 bits (19), Expect = 1.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 4     aatccaataccacattgat 22
             |||||||||||||||||||
Sbjct: 71213 aatccaataccacattgat 71195



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>gb|AY277973.1| Takifugu rubripes transcription factor Sox5 (Sox5) gene, complete cds
          Length = 61929

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 20    gatcgctcgctcgcccgc 37
             ||||||||||||||||||
Sbjct: 13306 gatcgctcgctcgcccgc 13323



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>gb|AC092100.5| Homo sapiens BAC clone RP11-666G4 from 7, complete sequence
          Length = 122099

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 1     aaaaatccaataccacat 18
             ||||||||||||||||||
Sbjct: 71746 aaaaatccaataccacat 71763



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>emb|AL031885.3|HS510B21 Human DNA sequence from clone RP3-510B21 on chromosome 6p11.2-12.3
             Contains a pseudogene similar to CLNS1B (chloride channel,
             nucleotide-sensitive, 1B), complete sequence
          Length = 108994

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 2     aaaatccaataccacatt 19
             ||||||||||||||||||
Sbjct: 38118 aaaatccaataccacatt 38101



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>gb|AC068909.31| Mus musculus BAC Clone 407f20 RPCI-23, complete sequence
          Length = 196383

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 5     atccaataccacattgat 22
             ||||||||||||||||||
Sbjct: 46054 atccaataccacattgat 46071



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>gb|AC149518.2| Xenopus tropicalis clone CH216-59A18, complete sequence
          Length = 210140

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 2      aaaatccaataccacatt 19
              ||||||||||||||||||
Sbjct: 163158 aaaatccaataccacatt 163175



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>gb|M63707.1|MUSKAPG Mouse kidney androgen-regulated protein (KAP) gene, complete cds
          Length = 4807

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 5    atccaataccacattgat 22
            ||||||||||||||||||
Sbjct: 1261 atccaataccacattgat 1244


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 210,673
Number of Sequences: 3902068
Number of extensions: 210673
Number of successful extensions: 62438
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62425
Number of HSP's gapped (non-prelim): 13
length of query: 38
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 18
effective length of database: 17,155,003,908
effective search space: 308790070344
effective search space used: 308790070344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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