>ref|NM_191405.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2550

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 42/43 (97%)
 Strand = Plus / Plus

                                                      
Query: 224 cgaggagggcaccgcggtgtacattgtgaccatgaagcaggcg 266
           |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 93  cgaggagggcacggcggtgtacattgtgaccatgaagcaggcg 135

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 42/43 (97%)
 Strand = Plus / Plus

                                                           
Query: 224      cgaggagggcaccgcggtgtacattgtgaccatgaagcaggcg 266
                |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 32444567 cgaggagggcacggcggtgtacattgtgaccatgaagcaggcg 32444609

>dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0665A11
          Length = 166421

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 42/43 (97%)
 Strand = Plus / Plus

                                                        
Query: 224   cgaggagggcaccgcggtgtacattgtgaccatgaagcaggcg 266
             |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 32088 cgaggagggcacggcggtgtacattgtgaccatgaagcaggcg 32130

>dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1143G03
          Length = 137770

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 42/43 (97%)
 Strand = Plus / Plus

                                                         
Query: 224    cgaggagggcaccgcggtgtacattgtgaccatgaagcaggcg 266
              |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 124064 cgaggagggcacggcggtgtacattgtgaccatgaagcaggcg 124106

>dbj|AK102456.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094B09, full
           insert sequence
          Length = 2873

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 42/43 (97%)
 Strand = Plus / Plus

                                                      
Query: 224 cgaggagggcaccgcggtgtacattgtgaccatgaagcaggcg 266
           |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 442 cgaggagggcacggcggtgtacattgtgaccatgaagcaggcg 484

>dbj|AK070376.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050H13, full
           insert sequence
          Length = 3095

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 42/43 (97%)
 Strand = Plus / Plus

                                                      
Query: 224 cgaggagggcaccgcggtgtacattgtgaccatgaagcaggcg 266
           |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 395 cgaggagggcacggcggtgtacattgtgaccatgaagcaggcg 437

>emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genome; segment 12/16
          Length = 348068

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 189   gcggtggcgctgctggccggcg 210
             ||||||||||||||||||||||
Sbjct: 58625 gcggtggcgctgctggccggcg 58604

>gb|AE004935.1| Pseudomonas aeruginosa PAO1, section 496 of 529 of the complete genome
          Length = 14450

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 193   tggcgctgctggccggcgcacg 214
             ||||||||||||||||||||||
Sbjct: 13096 tggcgctgctggccggcgcacg 13075

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 77       tcctgccgcccctccccctct 97
                |||||||||||||||||||||
Sbjct: 11714115 tcctgccgcccctccccctct 11714135

>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 191    ggtggcgctgctggccggcgc 211
              |||||||||||||||||||||
Sbjct: 754917 ggtggcgctgctggccggcgc 754897

>gb|AC118674.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0093J20, from chromosome 3, complete sequence
          Length = 148635

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 77     tcctgccgcccctccccctct 97
              |||||||||||||||||||||
Sbjct: 103210 tcctgccgcccctccccctct 103230

>emb|AJ582817.3| Streptomyces kanamyceticus kanamycin biosynthetic gene cluster, strain
             ATCC12853
          Length = 47050

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 197   gctgctggccggcgcacgcggcggc 221
             ||||||||| |||||||||||||||
Sbjct: 35770 gctgctggctggcgcacgcggcggc 35794

>gb|AE009815.1|AE009815 Pyrobaculum aerophilum strain IM2 section 70 of 201 of the complete
            genome
          Length = 14701

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 74   gattcctgccgcccctccccc 94
            |||||||||||||||||||||
Sbjct: 6455 gattcctgccgcccctccccc 6475

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 77       tcctgccgcccctccccctct 97
                |||||||||||||||||||||
Sbjct: 11710878 tcctgccgcccctccccctct 11710898

>gb|AE005081.1| Halobacterium sp. NRC-1 section 112 of 170 of the complete genome
          Length = 19293

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 207  ggcgcacgcggcggctccgaggagg 231
            |||||||||| ||||||||||||||
Sbjct: 1209 ggcgcacgcgccggctccgaggagg 1185

>dbj|AB164642.1| Streptomyces kanamyceticus kanamycin biosynthetic gene cluster,
             complete cds
          Length = 25467

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 197   gctgctggccggcgcacgcggcggc 221
             ||||||||| |||||||||||||||
Sbjct: 18363 gctgctggctggcgcacgcggcggc 18387

>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 191     ggtggcgctgctggccggcgc 211
               |||||||||||||||||||||
Sbjct: 3598928 ggtggcgctgctggccggcgc 3598908

>emb|AJ628422.2| Streptomyces kanamyceticus partial kanamycin biosynthesis gene cluster,
             strain DSM 40500
          Length = 41576

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 197   gctgctggccggcgcacgcggcggc 221
             ||||||||| |||||||||||||||
Sbjct: 32427 gctgctggctggcgcacgcggcggc 32451

>ref|XM_419187.1| PREDICTED: Gallus gallus similar to dystrobrevin alpha isoform 1;
            dystrophin-related protein 3 (LOC421104), mRNA
          Length = 3914

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 27   agtcctcctgctcccatggg 46
            ||||||||||||||||||||
Sbjct: 1444 agtcctcctgctcccatggg 1463

>gb|DQ480419.1| Hylobates lar isolate Gibbon2 CMT1A pseudogene, complete sequence
          Length = 24334

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 19  acaccaccagtcctcctgctccca 42
           |||||||||| |||||||||||||
Sbjct: 830 acaccaccagccctcctgctccca 807

>gb|DQ480418.1| Hylobates lar isolate Gibbon1 CMT1A pseudogene, complete sequence
          Length = 24338

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 19  acaccaccagtcctcctgctccca 42
           |||||||||| |||||||||||||
Sbjct: 830 acaccaccagccctcctgctccca 807

>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 230     gggcaccgcggtgtacattg 249
               ||||||||||||||||||||
Sbjct: 1836266 gggcaccgcggtgtacattg 1836247

>gb|AE012491.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 399 of
             460 of the complete genome
          Length = 11790

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 204   gccggcgcacgcggcggctc 223
             ||||||||||||||||||||
Sbjct: 11602 gccggcgcacgcggcggctc 11621

>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 204     gccggcgcacgcggcggctc 223
               ||||||||||||||||||||
Sbjct: 4472091 gccggcgcacgcggcggctc 4472110

>gb|AF529198.1| Ralstonia sp. XJ12B acy-homoserine lactone acylase (aac) gene,
           complete cds
          Length = 3743

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 192 gtggcgctgctggccggcgc 211
           ||||||||||||||||||||
Sbjct: 677 gtggcgctgctggccggcgc 658

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 99     gagcttcggggcggcgaggcgcgc 122
              ||||||| ||||||||||||||||
Sbjct: 262908 gagcttccgggcggcgaggcgcgc 262931

>gb|U23955.1|CSU23955 Corynebacterium sp. serine hydroxymethyltransferase (glyA) gene,
            partial cds, sarcosine oxidase beta (soxB), delta (soxD),
            alpha (soxA), and gamma (soxG) subunit genes, complete
            cds, and 10-formyltetrahydrofolate hydrolase (purU) gene,
            complete cds
          Length = 7285

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 219  ggctccgaggagggcaccgcggtg 242
            ||||||| ||||||||||||||||
Sbjct: 5427 ggctccgtggagggcaccgcggtg 5450

>emb|AL954848.9| Zebrafish DNA sequence from clone CH211-281G7, complete sequence
          Length = 170178

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     tgcaacaccaccagtcctcc 34
              ||||||||||||||||||||
Sbjct: 103753 tgcaacaccaccagtcctcc 103734


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,953,972
Number of Sequences: 3902068
Number of extensions: 1953972
Number of successful extensions: 44592
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43975
Number of HSP's gapped (non-prelim): 617
length of query: 270
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 248
effective length of database: 17,147,199,772
effective search space: 4252505543456
effective search space used: 4252505543456
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)