>SAPS2_MOUSE (Q8R3Q2) SAPS domain family member 2|
          Length = 923

 Score = 76.3 bits (186), Expect = 4e-14
 Identities = 37/93 (39%), Positives = 57/93 (61%)
 Frame = +2

Query: 167 MFWRMTGLSAASPVDTILDKENFTXXXXXXXXXIIQECKALNTRLINFLRDKAQVEQLLR 346
           MFW+   L+  S VD +LDKE+ T         I+QECKA N +L++FL  +  +E+L+ 
Sbjct: 1   MFWKFD-LNTTSHVDKLLDKEHVTLQELMDEDDILQECKAQNQKLLDFLCRQQCMEELVN 59

Query: 347 YVVEEVPDDAEKKRSFKFPFIACEIFTCEIDVI 445
            + ++ P D E+K  FK+P  ACE+ TC++  I
Sbjct: 60  LITQDPPQDMEEKVRFKYPNTACELLTCDVPQI 92

>SAPS3_CHICK (Q5F471) SAPS domain family member 3|
          Length = 873

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 34/93 (36%), Positives = 58/93 (62%)
 Frame = +2

Query: 167 MFWRMTGLSAASPVDTILDKENFTXXXXXXXXXIIQECKALNTRLINFLRDKAQVEQLLR 346
           MFW+   L ++S +DT+L++E+ T         ++QECKA N +LI FL     +E L+ 
Sbjct: 1   MFWKFD-LHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKSECLEDLVS 59

Query: 347 YVVEEVPDDAEKKRSFKFPFIACEIFTCEIDVI 445
           +++EE P D ++K  +K+P I+CE+ T ++  I
Sbjct: 60  FIIEEPPQDMDEKIRYKYPNISCELLTSDVSQI 92

>SAPS2_HUMAN (O75170) SAPS domain family member 2|
          Length = 927

 Score = 74.3 bits (181), Expect = 1e-13
 Identities = 37/93 (39%), Positives = 57/93 (61%)
 Frame = +2

Query: 167 MFWRMTGLSAASPVDTILDKENFTXXXXXXXXXIIQECKALNTRLINFLRDKAQVEQLLR 346
           MFW+   L+  S VD +LDKE+ T         I+QECKA N +L++FL  +  +E+L+ 
Sbjct: 1   MFWKFD-LNTTSHVDKLLDKEHVTLQELMDEDDILQECKAQNQKLLDFLCRQQCMEELVS 59

Query: 347 YVVEEVPDDAEKKRSFKFPFIACEIFTCEIDVI 445
            + ++ P D E+K  FK+P  ACE+ TC++  I
Sbjct: 60  LITQDPPLDMEEKVRFKYPNTACELLTCDVPQI 92

>SAPS3_MOUSE (Q922D4) SAPS domain family member 3|
          Length = 844

 Score = 73.6 bits (179), Expect = 2e-13
 Identities = 33/90 (36%), Positives = 57/90 (63%)
 Frame = +2

Query: 167 MFWRMTGLSAASPVDTILDKENFTXXXXXXXXXIIQECKALNTRLINFLRDKAQVEQLLR 346
           MFW+   L ++S +DT+L++E+ T         ++QECKA N +LI FL     +E L+ 
Sbjct: 1   MFWKFD-LHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVS 59

Query: 347 YVVEEVPDDAEKKRSFKFPFIACEIFTCEI 436
           +++EE P D ++K  +K+P I+CE+ T ++
Sbjct: 60  FIIEEPPQDMDEKIRYKYPNISCELLTSDV 89

>SAPS3_HUMAN (Q5H9R7) SAPS domain family member 3 (Sporulation-induced|
           transcript 4-associated protein SAPL) (Protein
           phosphatase 6 regulatory subunit 3)
          Length = 873

 Score = 73.6 bits (179), Expect = 2e-13
 Identities = 33/90 (36%), Positives = 57/90 (63%)
 Frame = +2

Query: 167 MFWRMTGLSAASPVDTILDKENFTXXXXXXXXXIIQECKALNTRLINFLRDKAQVEQLLR 346
           MFW+   L ++S +DT+L++E+ T         ++QECKA N +LI FL     +E L+ 
Sbjct: 1   MFWKFD-LHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVS 59

Query: 347 YVVEEVPDDAEKKRSFKFPFIACEIFTCEI 436
           +++EE P D ++K  +K+P I+CE+ T ++
Sbjct: 60  FIIEEPPQDMDEKIRYKYPNISCELLTSDV 89

>SAP3B_XENLA (Q6NRF1) SAPS domain family member 3-B|
          Length = 850

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 32/93 (34%), Positives = 56/93 (60%)
 Frame = +2

Query: 167 MFWRMTGLSAASPVDTILDKENFTXXXXXXXXXIIQECKALNTRLINFLRDKAQVEQLLR 346
           MFW+   L ++S +DT+L+++  T         I+QECKA N +L+ FL     +E L+ 
Sbjct: 1   MFWKFD-LHSSSHIDTLLERDEVTLKELMDEEDILQECKAQNRKLVEFLLKSECLEDLVT 59

Query: 347 YVVEEVPDDAEKKRSFKFPFIACEIFTCEIDVI 445
           ++ EE P D ++K  +K+P ++CE+ T ++  I
Sbjct: 60  FITEEPPQDMDEKIRYKYPNLSCELLTSDVSQI 92

>SAP3A_XENLA (Q6NRI0) SAPS domain family member 3-A|
          Length = 852

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 32/93 (34%), Positives = 56/93 (60%)
 Frame = +2

Query: 167 MFWRMTGLSAASPVDTILDKENFTXXXXXXXXXIIQECKALNTRLINFLRDKAQVEQLLR 346
           MFW+   L ++S +DT+L+++  T         I+QECKA N +L+ FL     +E L+ 
Sbjct: 1   MFWKFD-LHSSSHIDTLLERDEVTLKELMDEEDILQECKAQNRKLVEFLLKAECLEDLVT 59

Query: 347 YVVEEVPDDAEKKRSFKFPFIACEIFTCEIDVI 445
           ++ EE P D ++K  +K+P ++CE+ T ++  I
Sbjct: 60  FITEEPPQDMDEKIRYKYPNLSCELLTSDVSQI 92

>SAPS1_HUMAN (Q9UPN7) SAPS domain family member 1|
          Length = 881

 Score = 70.1 bits (170), Expect = 3e-12
 Identities = 30/93 (32%), Positives = 57/93 (61%)
 Frame = +2

Query: 167 MFWRMTGLSAASPVDTILDKENFTXXXXXXXXXIIQECKALNTRLINFLRDKAQVEQLLR 346
           MFW+   L  +S +DT+L++E+ +         ++QECK +N +L++FL     ++ ++ 
Sbjct: 1   MFWKFD-LHTSSHLDTLLEREDLSLPELLDEEDVLQECKVVNRKLLDFLLQPPHLQAMVA 59

Query: 347 YVVEEVPDDAEKKRSFKFPFIACEIFTCEIDVI 445
           +V +E PD  E++  +K+P +ACEI T ++  I
Sbjct: 60  WVTQEPPDSGEERLRYKYPSVACEILTSDVPQI 92

>SAPS1_MOUSE (Q7TSI3) SAPS domain family member 1|
          Length = 856

 Score = 68.9 bits (167), Expect = 6e-12
 Identities = 30/93 (32%), Positives = 57/93 (61%)
 Frame = +2

Query: 167 MFWRMTGLSAASPVDTILDKENFTXXXXXXXXXIIQECKALNTRLINFLRDKAQVEQLLR 346
           MFW+   L  +S +DT+L+KE+ +         ++QECK +N +L++FL   + ++ ++ 
Sbjct: 1   MFWKFD-LHTSSHLDTLLEKEDLSLPELLDEEDVLQECKVVNRKLLDFLLQPSHLQAMVA 59

Query: 347 YVVEEVPDDAEKKRSFKFPFIACEIFTCEIDVI 445
           +V +E P   E++  +K+P +ACEI T ++  I
Sbjct: 60  WVTQEPPASGEERLRYKYPSVACEILTSDVPQI 92

>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2|
          Length = 969

 Score = 33.9 bits (76), Expect = 0.21
 Identities = 26/73 (35%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
 Frame = -3

Query: 204 GEAAERPVMRQNMVAAAVDLG------FPAPGGASPRPNPRESGRRRPDWATGEGGWIGR 43
           G+ A RP        AA   G       P+PG   PRPNP    +R P      GG  GR
Sbjct: 217 GQGAPRPGATPGPRPAAAQGGPRPGGPRPSPGSMPPRPNPGAMPQRTPRPGPSAGGRPGR 276

Query: 42  --GASGSNWDRGG 10
             GA G+    GG
Sbjct: 277 PGGAPGAGRPGGG 289

>YKY4_CAEEL (Q17963) Hypothetical WD-repeat protein C14B1.4|
          Length = 376

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 204 GEAAERPVMRQNMVAAAVDLGFPAPGGASPRPNPRESG 91
           G +A  P    N ++ +   G PAPG ++  PNP  +G
Sbjct: 31  GSSAPAPSTSPNSISPSNPTGTPAPGASAQTPNPNAAG 68

>SCRT1_MOUSE (Q99M85) Transcriptional repressor scratch 1 (Scratch homolog 1|
           zinc finger protein) (Scratch 1) (SCRT) (mScrt)
          Length = 348

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -3

Query: 168 MVAAAV--DLGFPAPGGASPRPNPRESGRRRPDWATGEGGWIGRGASGS 28
           M AAAV  +LG PA  G++P P P      RP+ AT  GG+I   A+ S
Sbjct: 68  MYAAAVRGELG-PAASGSAPPPTP------RPELATAAGGYINGDAAVS 109

>SCRT1_HUMAN (Q9BWW7) Transcriptional repressor scratch 1 (Scratch homolog 1|
           zinc finger protein) (Scratch 1) (SCRT) (hScrt)
          Length = 348

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -3

Query: 168 MVAAAV--DLGFPAPGGASPRPNPRESGRRRPDWATGEGGWIGRGASGS 28
           M AAAV  +LG PA  G++P P P      RP+ AT  GG+I   A+ S
Sbjct: 68  MYAAAVRGELG-PAAAGSAPPPTP------RPELATAAGGYINGDAAVS 109

>Y928_TREPA (O83898) Hypothetical protein TP0928|
          Length = 246

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
 Frame = +2

Query: 287 LNTRLINFLRDKAQVEQLLRYVV---EEVPDDAEKKRSFKFP-FIACEIFTC 430
           LN+R + F++D A+ E+  RYVV   E  P +   +     P F+ C  F C
Sbjct: 180 LNSRELRFVQDMAKKERSFRYVVLGEERFPAERVSRTGKSMPTFLPCITFPC 231

>VGLB_BHV1P (P17471) Glycoprotein I precursor (Glycoprotein GVP-6)|
           (Glycoprotein 11A) (Glycoprotein 16) (Glycoprotein G130)
          Length = 928

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 113 RGLAPPGAGNPRSTAAATMFWRMTGLSAASP 205
           RG A PGAG  R+  AA + W    L  A+P
Sbjct: 34  RGPAAPGAGGARAALAAALLWATWALLLAAP 64

>VGLB_BHV1C (P12640) Glycoprotein I precursor (Glycoprotein GVP-6)|
           (Glycoprotein 11A) (Glycoprotein 16) (Glycoprotein G130)
           (Glycoprotein B)
          Length = 932

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 113 RGLAPPGAGNPRSTAAATMFWRMTGLSAASP 205
           RG A PGAG  R+  AA + W    L  A+P
Sbjct: 34  RGPAAPGAGGARAALAAALLWATWALLLAAP 64

>HTPX_RHILO (Q98ET0) Probable protease htpX homolog (EC 3.4.24.-)|
          Length = 336

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -3

Query: 171 NMVAAAVDLGFPAPGG--ASPRPNPRESGRRRPDWATGE 61
           N +AA  ++     GG  A+PRP PR++G ++P    G+
Sbjct: 268 NRIAALQEMAQQMAGGTQAAPRPTPRQAGEQQPSGPWGQ 306

>IF2_THEFY (Q47RV1) Translation initiation factor IF-2|
          Length = 955

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 12/48 (25%)
 Frame = -3

Query: 117 PRPNPRES------------GRRRPDWATGEGGWIGRGASGSNWDRGG 10
           PRP PR S            G  RP  ++  GG  GRG  G    RGG
Sbjct: 243 PRPGPRPSPMNMPASRPTPPGGARPSTSSRSGGGRGRGGGGGAGPRGG 290

>MYOB_DICDI (P34092) Myosin IB heavy chain|
          Length = 1111

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 129  GGASPRPNPRESGRRRPDWATGEGGWIGRGA 37
            GGA P P P++ G  RP  A  +GG   +GA
Sbjct: 975  GGARPMPQPQQGGGARPMGAPQQGGAPQQGA 1005

>CCA_AERPE (Q9YB04) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21) (tRNA|
           nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-
           transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT)
          Length = 435

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 141 FPAPGGASPRPNPRESGRRRPDWATGEGGWIGRGASG 31
           +P  G   P P  RE   R  +   GEGGW+  G  G
Sbjct: 330 YPIEGRLGPPPWERERAARFTEKRLGEGGWVWIGDDG 366

>SHAN3_HUMAN (Q9BYB0) SH3 and multiple ankyrin repeat domains protein 3 (Shank3)|
           (Proline-rich synapse-associated protein 2) (ProSAP2)
           (Fragment)
          Length = 797

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = -3

Query: 159 AAVDLGFPAPGGAS--PRPNPRESGRRRP--DWATGEGGWIGRGASGSNWDR 16
           AA+ +G P PGG S    P+P   G R    D+  G+G  +  G  G   DR
Sbjct: 33  AALAVGSPGPGGGSFAREPSPTHRGPRPGGLDYGAGDGPGLAFGGPGPAKDR 84

>ARTE_ARATH (Q9FYL3) Protein ARTEMIS, chloroplast precursor (Arabidopsis|
           thaliana envelope membrane integrase) (Ath4)
           (ALBINO3-like protein 1)
          Length = 1013

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = -3

Query: 144 GFPAPGGASPRPNPRESGRRRPDWATGEGGWIGRGASGSNWDRGG*E 4
           G P+PGG S  P     G   P    G GG   +G  G    + G E
Sbjct: 404 GSPSPGGGSGSPPSTGGGSGSPPSTGGGGGSPSKGGGGGKSGKSGEE 450

>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)|
            (LC collagen)
          Length = 2944

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -3

Query: 144  GFPA-PGGASPRPNPRESGRRRPDWATGEGGWIGRGASGSNWDR 16
            GFP  PGG  P+ +  E+G +      GE G  G   S  N DR
Sbjct: 1901 GFPGVPGGTGPKGDRGETGSKGEQGLPGERGLRGEPGSVPNVDR 1944

>FBRL_GIALA (Q24957) Fibrillarin|
          Length = 327

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
 Frame = -3

Query: 144 GFPAPGGASPRPNPRESGR-------RRPDWATGEGG 55
           G   PGG  P  + R+SGR        RPD+  G+GG
Sbjct: 12  GRDGPGGRGPGNDRRDSGRSFGDRRPERPDFKRGDGG 48

>US02_EHV1B (P28964) Gene 68 protein|
          Length = 418

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = -3

Query: 189 RPVMRQNMVAAAVDLG----FPAPGGASPRPNPRESGRRRPDWA 70
           RP   + ++ A VD       PAPG   PR  P E G  RP+ A
Sbjct: 210 RPPTVKRVIYAVVDPARLREIPAPGRPLPRRRPSEGGDARPEAA 253

>TOP3B_MOUSE (Q9Z321) DNA topoisomerase 3-beta-1 (EC 5.99.1.2) (DNA|
           topoisomerase III beta-1)
          Length = 862

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +2

Query: 74  QSGRRRPDSRGFGRGLAPPGAGNPR 148
           + G  R   RG GRG  PPG  NPR
Sbjct: 824 RGGPGRRQGRGRGRGRRPPGKPNPR 848

>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -3

Query: 147 LGFPAPGGASPRP-NPRESGRRRPDWATGEGGWIGR-GASG 31
           +GFP P GA+  P  P E G   P  A G  G  G  GA G
Sbjct: 569 MGFPGPKGAAGEPGKPGERGAPGPPGAVGAAGKDGEAGAQG 609

>CI066_HUMAN (Q5T8R8) Protein C9orf66|
          Length = 295

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 24/61 (39%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
 Frame = -3

Query: 198 AAERPVMRQNMV--AAAVDLGFPAPGGASPRPNPR---ESGR-RRPDWATGEGGWIGRGA 37
           AAE      N+V  +A     FP     SPR   R     GR R P W  G GG  GRG 
Sbjct: 165 AAEHAQPSANLVCRSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRGP 224

Query: 36  S 34
           S
Sbjct: 225 S 225

>SOX12_HUMAN (O15370) SOX-12 protein (SOX-22 protein)|
          Length = 315

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -3

Query: 183 VMRQNMVAAAVDLGFPAPGGASPRPNPRESGRRRPDWATGEGGWIGR 43
           +++Q    A  D G P PG     P P E G R P W     G I R
Sbjct: 1   MVQQRGARAKRDGGPPPPG-----PGPAEEGAREPGWCKTPSGHIKR 42

>MYSC_ACACA (P10569) Myosin IC heavy chain|
          Length = 1168

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 18/39 (46%), Positives = 20/39 (51%)
 Frame = -3

Query: 144  GFPAPGGASPRPNPRESGRRRPDWATGEGGWIGRGASGS 28
            G PAPGGA+PR      GR  P    G GG  G G  G+
Sbjct: 1099 GMPAPGGAAPR------GRGAP--PPGAGGPPGGGRGGA 1129

>TOP3A_DROME (Q9NG98) DNA topoisomerase 3-alpha (EC 5.99.1.2) (DNA topoisomerase|
           III alpha)
          Length = 1250

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 17/43 (39%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
 Frame = -3

Query: 129 GGASPRPNPRESGRRRPDWATGEGGWI---GRGASGSNWDRGG 10
           GG  P P P   G  R     G GGW    G G SG     GG
Sbjct: 771 GGGGPGPGPGGGGSGR---GAGSGGWSSGPGGGGSGGGGGSGG 810

>MCHR1_MACMU (Q8MJ89) Melanin-concentrating hormone receptor 1 (MCH receptor 1)|
           (MCHR-1) (MCH-R1) (MCH1R) (MCH-1R) (MCHR) (G-protein
           coupled receptor 24) (Fragment)
          Length = 388

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
 Frame = -3

Query: 105 PRESGRR----RPDWATGEGGWIGRGASGSNW 22
           P + GRR    +P W  G   W+   A+G+ W
Sbjct: 4   PGQGGRRWRLPQPAWVEGSSAWLWEPATGTGW 35

>UL34_EBV (P03185) Protein BFRF1|
          Length = 336

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = -3

Query: 150 DLGFPAPGGASPRPNPRESGRRRPDWATGEGGW 52
           D G    GG  PRP    SG        G GGW
Sbjct: 199 DTGARVTGGGGPRPGVTHSGCLGDSHVRGRGGW 231


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,981,168
Number of Sequences: 219361
Number of extensions: 937787
Number of successful extensions: 3889
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 3531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3873
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)