ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl09d10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464583.1| Oryza sativa (japonica cultivar-group), mRNA 347 2e-92
2dbj|AK111584.1| Oryza sativa (japonica cultivar-group) cDNA clon... 196 4e-47
3ref|XM_464582.1| Oryza sativa (japonica cultivar-group), mRNA 165 1e-37
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 113 5e-22
5dbj|AP003977.3| Oryza sativa (japonica cultivar-group) genomic D... 113 5e-22
6gb|DQ122786.1| Medicago sativa clone H47 coatomer protein comple... 94 4e-16
7ref|NM_106648.2| Arabidopsis thaliana protein transporter AT1G79... 66 1e-07
8gb|AY090955.1| Arabidopsis thaliana putative coatomer protein co... 66 1e-07
9ref|NM_104114.1| Arabidopsis thaliana protein transporter AT1G52... 64 4e-07
10dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
11gb|AC037424.10|AC037424 Arabidopsis thaliana chromosome 1 BAC F1... 58 2e-05
12dbj|AP003487.2| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
13ref|XM_516784.1| PREDICTED: Pan troglodytes similar to coatomer ... 54 4e-04
14gb|BC000326.2| Homo sapiens coatomer protein complex, subunit be... 54 4e-04
15ref|NM_004766.1| Homo sapiens coatomer protein complex, subunit ... 54 4e-04
16emb|X70476.1|HSCTMRSU H.sapiens subunit of coatomer complex 54 4e-04
17emb|CR860632.1| Pongo pygmaeus mRNA; cDNA DKFZp459D1624 (from cl... 54 4e-04
18dbj|AK128561.1| Homo sapiens cDNA FLJ46720 fis, clone TRACH30185... 54 4e-04
19gb|AC024933.34| Homo sapiens 3 BAC RP11-219D15 (Roswell Park Can... 54 4e-04
20ref|XM_534283.2| PREDICTED: Canis familiaris similar to coatomer... 52 0.001
21ref|NM_112468.2| Arabidopsis thaliana protein transporter AT3G15... 48 0.023
22ref|NM_180262.1| Arabidopsis thaliana protein transporter AT3G15... 48 0.023
23ref|NM_180261.1| Arabidopsis thaliana protein transporter AT3G15... 48 0.023
24gb|AY120786.1| Arabidopsis thaliana putative coatomer complex su... 48 0.023
25dbj|AB012247.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 48 0.023
26gb|BT001201.1| Arabidopsis thaliana putative coatomer complex su... 48 0.023
27ref|NM_015827.1| Mus musculus coatomer protein complex, subunit ... 46 0.092
28gb|AC117214.3| Mus musculus BAC clone RP23-307B15 from chromosom... 46 0.092
29emb|X72756.1|BTBETPCOP B.taurus bt betaprime cop mRNA 46 0.092
30dbj|AK153352.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 46 0.092
31dbj|AB169906.1| Macaca fascicularis brain cDNA, clone: QtrA-1258... 46 0.092
32dbj|AK088064.1| Mus musculus 2 days neonate thymus thymic cells ... 46 0.092
33ref|NM_174281.2| Bos taurus coatomer protein complex, subunit be... 46 0.092
34gb|BC006675.1| Mus musculus coatomer protein complex, subunit be... 46 0.092
35gb|AC140449.3| Mus musculus BAC clone RP24-116C1 from 9, complet... 46 0.092
36gb|BC010842.1| Mus musculus cDNA clone IMAGE:3485707, containing... 46 0.092
37gb|AC117819.11| Mus musculus chromosome 1, clone RP24-576P17, co... 42 1.4
38gb|AC148006.4| Mus musculus BAC clone RP23-298P21 from chromosom... 42 1.4
39gb|AC116744.8| Mus musculus chromosome 19, clone RP23-79B16, com... 42 1.4
40gb|AC163268.4| Mus musculus chromosome 1, clone RP24-63C6, compl... 42 1.4
41gb|AC121551.11| Mus musculus chromosome 1, clone RP24-144H23, co... 40 5.7
42ref|XM_423797.1| PREDICTED: Gallus gallus similar to sodium bica... 40 5.7
43ref|XM_423758.1| PREDICTED: Gallus gallus similar to sodium bica... 40 5.7
44gb|AC145952.3| Pan troglodytes BAC clone RP43-18D16 from 7, comp... 40 5.7
45gb|AY808633.1| Schistosoma japonicum SJCHGC04487 protein mRNA, p... 40 5.7
46gb|AC156273.7| Mus musculus 10 BAC RP24-275P22 (Roswell Park Can... 40 5.7
47gb|AC131177.9| Mus musculus chromosome 1, clone RP23-374I10, com... 40 5.7 
>ref|XM_464583.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2733

 Score =  347 bits (175), Expect = 2e-92
 Identities = 235/255 (92%)
 Strand = Plus / Plus

                                                                       
Query: 168 atgccgctccggttggatatcaagaggaagctcgcgcagaggtcggagagggtcaagtcc 227
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgccgctcaggttggatatcaagaggaagctcgcgcagaggtcggagagggtcaagtcc 60

                                                                       
Query: 228 gcggatctgcatccgacagagccatggattttgtcgagtctttactcggggagtgtctgc 287
           | ||||||||||||||| ||||||||||||||||||||||| || || ||||| ||||||
Sbjct: 61  gtggatctgcatccgaccgagccatggattttgtcgagtctgtattcagggagcgtctgc 120

                                                                       
Query: 288 atctggaactaccaaacgcagacaatggtgaaatcatttgaagtcacagagttaccggtt 347
           |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 121 atctggaactaccagacgcagacgatggtgaaatcatttgaagtcacagagttaccagtt 180

                                                                       
Query: 348 cgttcggctaaatttattgcacgaaagcaatgggtcgttgctggtgccgatgatatgttt 407
           || ||  |||||||||| ||||| || |||||| | ||||||||||||||||||||||| 
Sbjct: 181 cggtcatctaaatttatcgcacggaaacaatggatagttgctggtgccgatgatatgttc 240

                          
Query: 408 atccgtgtgtacaat 422
           || ||||||||||||
Sbjct: 241 atacgtgtgtacaat 255
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>dbj|AK111584.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089O14, full
           insert sequence
          Length = 3391

 Score =  196 bits (99), Expect = 4e-47
 Identities = 222/263 (84%)
 Strand = Plus / Plus

                                                                       
Query: 159 gccgccacaatgccgctccggttggatatcaagaggaagctcgcgcagaggtcggagagg 218
           |||||||| ||||||||| ||||||| |||||||||||| | |||||  |||||||||||
Sbjct: 171 gccgccaccatgccgctcaggttggagatcaagaggaagtttgcgcaacggtcggagagg 230

                                                                       
Query: 219 gtcaagtccgcggatctgcatccgacagagccatggattttgtcgagtctttactcgggg 278
           |||||||| | ||||||||| || || |||||||||||  |||||||||||||||| |||
Sbjct: 231 gtcaagtcggtggatctgcaccccacggagccatggatcctgtcgagtctttactccggg 290

                                                                       
Query: 279 agtgtctgcatctggaactaccaaacgcagacaatggtgaaatcatttgaagtcacagag 338
           || || ||||||||| |||| ||  |||||||||||||||| |||||||||||  |||| 
Sbjct: 291 agcgtgtgcatctgggactatcagtcgcagacaatggtgaagtcatttgaagtttcagaa 350

                                                                       
Query: 339 ttaccggttcgttcggctaaatttattgcacgaaagcaatgggtcgttgctggtgccgat 398
           || || || || || || ||||||||| |||| || |||||||| || |||||||| || 
Sbjct: 351 ttgccagtgcggtcagcaaaatttatttcacggaaacaatgggttgtagctggtgcagac 410

                                  
Query: 399 gatatgtttatccgtgtgtacaa 421
           |||||||| || ||||| |||||
Sbjct: 411 gatatgttcattcgtgtctacaa 433
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>ref|XM_464582.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2628

 Score =  165 bits (83), Expect = 1e-37
 Identities = 110/119 (92%)
 Strand = Plus / Plus

                                                                       
Query: 190 agaggaagctcgcgcagaggtcggagagggtcaagtccgcggatctgcatccgacagagc 249
           |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||
Sbjct: 21  agaggaagctcgcgcagaggtcggagagggccaagtccgtggatctgcatccgaccgagc 80

                                                                      
Query: 250 catggattttgtcgagtctttactcggggagtgtctgcatctggaactaccaaacgcag 308
           ||||||||||||||||||| || || ||||| || ||||||||||||||||| ||||||
Sbjct: 81  catggattttgtcgagtctgtattcagggagcgtttgcatctggaactaccagacgcag 139



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Plus

                                                                       
Query: 355 ctaaatttattgcacgaaagcaatgggtcgttgctggtgccgatgatatgtttatccgtg 414
           ||||||||||  |||| || |||||||| |||||||||||||| |||||||| || ||||
Sbjct: 149 ctaaatttatcacacggaaacaatgggtagttgctggtgccgacgatatgttcatacgtg 208

                   
Query: 415 tgtacaat 422
           ||||||||
Sbjct: 209 tgtacaat 216
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  113 bits (57), Expect = 5e-22
 Identities = 63/65 (96%)
 Strand = Plus / Minus

                                                                           
Query: 190     agaggaagctcgcgcagaggtcggagagggtcaagtccgcggatctgcatccgacagagc 249
               ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 6140426 agaggaagctcgcgcagaggtcggagagggtcaagtccgtggatctgcatccgaccgagc 6140367

                    
Query: 250     catgg 254
               |||||
Sbjct: 6140366 catgg 6140362



 Score =  105 bits (53), Expect = 1e-19
 Identities = 62/65 (95%)
 Strand = Plus / Minus

                                                                           
Query: 190     agaggaagctcgcgcagaggtcggagagggtcaagtccgcggatctgcatccgacagagc 249
               |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||
Sbjct: 6127729 agaggaagctcgcgcagaggtcggagagggccaagtccgtggatctgcatccgaccgagc 6127670

                    
Query: 250     catgg 254
               |||||
Sbjct: 6127669 catgg 6127665



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                           
Query: 355     ctaaatttattgcacgaaagcaatgggtcgttgctggtgccgatgatatgtttatccgtg 414
               |||||||||| ||||| || |||||| | ||||||||||||||||||||||| || ||||
Sbjct: 6139514 ctaaatttatcgcacggaaacaatggatagttgctggtgccgatgatatgttcatacgtg 6139455

                       
Query: 415     tgtacaat 422
               ||||||||
Sbjct: 6139454 tgtacaat 6139447



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                       
Query: 253     ggattttgtcgagtctttactcggggagtgtctgcatctggaactaccaaacgcag 308
               |||||||||||||||| || || ||||| |||||||||||||||||||| ||||||
Sbjct: 6140251 ggattttgtcgagtctgtattcagggagcgtctgcatctggaactaccagacgcag 6140196



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                           
Query: 355     ctaaatttattgcacgaaagcaatgggtcgttgctggtgccgatgatatgtttatccgtg 414
               ||||||||||  |||| || |||||||| |||||||||||||| |||||||| || ||||
Sbjct: 6126824 ctaaatttatcacacggaaacaatgggtagttgctggtgccgacgatatgttcatacgtg 6126765

                       
Query: 415     tgtacaat 422
               ||||||||
Sbjct: 6126764 tgtacaat 6126757



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                     
Query: 306     cagacaatggtgaaatcatttgaagtcacagagttacc 343
               ||||| ||||||||||||||||||||||||||||||||
Sbjct: 6139638 cagacgatggtgaaatcatttgaagtcacagagttacc 6139601



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                     
Query: 306     cagacaatggtgaaatcatttgaagtcacagagttacc 343
               ||||| ||||||||||||||||||||||||||||||||
Sbjct: 6126945 cagacgatggtgaaatcatttgaagtcacagagttacc 6126908



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                       
Query: 253     ggattttgtcgagtctttactcggggagtgtctgcatctggaactaccaaacgcag 308
               |||||||||||||||| || || ||||| || ||||||||||||||||| ||||||
Sbjct: 6127555 ggattttgtcgagtctgtattcagggagcgtttgcatctggaactaccagacgcag 6127500
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>dbj|AP003977.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1006_A02
          Length = 175153

 Score =  113 bits (57), Expect = 5e-22
 Identities = 63/65 (96%)
 Strand = Plus / Minus

                                                                          
Query: 190    agaggaagctcgcgcagaggtcggagagggtcaagtccgcggatctgcatccgacagagc 249
              ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 105908 agaggaagctcgcgcagaggtcggagagggtcaagtccgtggatctgcatccgaccgagc 105849

                   
Query: 250    catgg 254
              |||||
Sbjct: 105848 catgg 105844



 Score =  105 bits (53), Expect = 1e-19
 Identities = 62/65 (95%)
 Strand = Plus / Minus

                                                                         
Query: 190   agaggaagctcgcgcagaggtcggagagggtcaagtccgcggatctgcatccgacagagc 249
             |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||
Sbjct: 93211 agaggaagctcgcgcagaggtcggagagggccaagtccgtggatctgcatccgaccgagc 93152

                  
Query: 250   catgg 254
             |||||
Sbjct: 93151 catgg 93147



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                          
Query: 355    ctaaatttattgcacgaaagcaatgggtcgttgctggtgccgatgatatgtttatccgtg 414
              |||||||||| ||||| || |||||| | ||||||||||||||||||||||| || ||||
Sbjct: 104996 ctaaatttatcgcacggaaacaatggatagttgctggtgccgatgatatgttcatacgtg 104937

                      
Query: 415    tgtacaat 422
              ||||||||
Sbjct: 104936 tgtacaat 104929



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                      
Query: 253    ggattttgtcgagtctttactcggggagtgtctgcatctggaactaccaaacgcag 308
              |||||||||||||||| || || ||||| |||||||||||||||||||| ||||||
Sbjct: 105733 ggattttgtcgagtctgtattcagggagcgtctgcatctggaactaccagacgcag 105678



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                         
Query: 355   ctaaatttattgcacgaaagcaatgggtcgttgctggtgccgatgatatgtttatccgtg 414
             ||||||||||  |||| || |||||||| |||||||||||||| |||||||| || ||||
Sbjct: 92306 ctaaatttatcacacggaaacaatgggtagttgctggtgccgacgatatgttcatacgtg 92247

                     
Query: 415   tgtacaat 422
             ||||||||
Sbjct: 92246 tgtacaat 92239



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                    
Query: 306    cagacaatggtgaaatcatttgaagtcacagagttacc 343
              ||||| ||||||||||||||||||||||||||||||||
Sbjct: 105120 cagacgatggtgaaatcatttgaagtcacagagttacc 105083



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                   
Query: 306   cagacaatggtgaaatcatttgaagtcacagagttacc 343
             ||||| ||||||||||||||||||||||||||||||||
Sbjct: 92427 cagacgatggtgaaatcatttgaagtcacagagttacc 92390



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                     
Query: 253   ggattttgtcgagtctttactcggggagtgtctgcatctggaactaccaaacgcag 308
             |||||||||||||||| || || ||||| || ||||||||||||||||| ||||||
Sbjct: 93037 ggattttgtcgagtctgtattcagggagcgtttgcatctggaactaccagacgcag 92982
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>gb|DQ122786.1| Medicago sativa clone H47 coatomer protein complex subunit beta 2
           mRNA, partial cds
          Length = 545

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 137/167 (82%)
 Strand = Plus / Plus

                                                                       
Query: 249 ccatggattttgtcgagtctttactcggggagtgtctgcatctggaactaccaaacgcag 308
           |||||||||||| | ||| | ||||| || | |||||| ||||||||||||||| | |||
Sbjct: 223 ccatggattttggcaagtttatactctggaactgtctgtatctggaactaccaatctcag 282

                                                                       
Query: 309 acaatggtgaaatcatttgaagtcacagagttaccggttcgttcggctaaatttattgca 368
           || ||||  ||||| ||||| ||||| |||||||| ||| | || || || ||| |||||
Sbjct: 283 accatggccaaatcttttgaggtcaccgagttaccagttagatcagcgaagtttgttgca 342

                                                          
Query: 369 cgaaagcaatgggtcgttgctggtgccgatgatatgtttatccgtgt 415
           || || || ||||| |||||||| || |||||||||||||| |||||
Sbjct: 343 cgcaaacagtgggttgttgctggagcagatgatatgtttattcgtgt 389
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>ref|NM_106648.2| Arabidopsis thaliana protein transporter AT1G79990 mRNA, complete
           cds
          Length = 3179

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 111/137 (81%)
 Strand = Plus / Plus

                                                                       
Query: 285 tgcatctggaactaccaaacgcagacaatggtgaaatcatttgaagtcacagagttaccg 344
           ||||||||||| ||||| || ||||||||||| ||||| || || || || || || || 
Sbjct: 245 tgcatctggaattaccagacccagacaatggtaaaatctttcgacgtgactgaattgcct 304

                                                                       
Query: 345 gttcgttcggctaaatttattgcacgaaagcaatgggtcgttgctggtgccgatgatatg 404
           ||||| || || || || |||||||| ||||| ||||| || ||||| || ||||| |||
Sbjct: 305 gttcggtcagcaaagttcattgcacggaagcagtgggttgtagctggagctgatgacatg 364

                            
Query: 405 tttatccgtgtgtacaa 421
           ||||| ||||| |||||
Sbjct: 365 tttattcgtgtctacaa 381
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>gb|AY090955.1| Arabidopsis thaliana putative coatomer protein complex, subunit
           beta 2 (beta prime) (At1g79990) mRNA, complete cds
          Length = 3162

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 111/137 (81%)
 Strand = Plus / Plus

                                                                       
Query: 285 tgcatctggaactaccaaacgcagacaatggtgaaatcatttgaagtcacagagttaccg 344
           ||||||||||| ||||| || ||||||||||| ||||| || || || || || || || 
Sbjct: 245 tgcatctggaattaccagacccagacaatggtaaaatctttcgacgtgactgaattgcct 304

                                                                       
Query: 345 gttcgttcggctaaatttattgcacgaaagcaatgggtcgttgctggtgccgatgatatg 404
           ||||| || || || || |||||||| ||||| ||||| || ||||| || ||||| |||
Sbjct: 305 gttcggtcagcaaagttcattgcacggaagcagtgggttgtagctggagctgatgacatg 364

                            
Query: 405 tttatccgtgtgtacaa 421
           ||||| ||||| |||||
Sbjct: 365 tttattcgtgtctacaa 381
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>ref|NM_104114.1| Arabidopsis thaliana protein transporter AT1G52360 mRNA, complete
           cds
          Length = 2781

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 107/132 (81%)
 Strand = Plus / Plus

                                                                       
Query: 291 tggaactaccaaacgcagacaatggtgaaatcatttgaagtcacagagttaccggttcgt 350
           ||||||||||| ||||||   ||||  ||||| ||||| || || || ||||| ||||| 
Sbjct: 124 tggaactaccagacgcaggtgatggcaaaatcctttgaggtgactgaattaccagttcgg 183

                                                                       
Query: 351 tcggctaaatttattgcacgaaagcaatgggtcgttgctggtgccgatgatatgtttatc 410
           || || || ||| | ||||||||||||||||| || || || || |||||||||| ||||
Sbjct: 184 tcagccaagtttgtagcacgaaagcaatgggttgtcgcaggagctgatgatatgtatatc 243

                       
Query: 411 cgtgtgtacaat 422
           ||||| ||||||
Sbjct: 244 cgtgtatacaat 255
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                           
Query: 190     agaggaagctcgcgcagaggtcggagagggtcaagtccgcggatctgcatccgacagagc 249
               |||||||| | |||||  ||||||||||||||||||| | ||||||||| || || ||||
Sbjct: 2328167 agaggaagtttgcgcaacggtcggagagggtcaagtcggtggatctgcaccccacggagc 2328108

                    
Query: 250     catgg 254
               |||||
Sbjct: 2328107 catgg 2328103



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                       
Query: 259     tgtcgagtctttactcggggagtgtctgcatctggaacta 298
               |||||||||||||||| ||||| || ||||||||| ||||
Sbjct: 2327975 tgtcgagtctttactccgggagcgtgtgcatctgggacta 2327936



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 305     gcagacaatggtgaaatcatttgaagt 331
               ||||||||||||||| |||||||||||
Sbjct: 2327207 gcagacaatggtgaagtcatttgaagt 2327181
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>gb|AC037424.10|AC037424 Arabidopsis thaliana chromosome 1 BAC F19K6 genomic sequence, complete
             sequence
          Length = 75948

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                      
Query: 366   gcacgaaagcaatgggtcgttgctggtgccgatgatatgtttatccgtgtgtacaat 422
             ||||||||||||||||| || || || || |||||||||| ||||||||| ||||||
Sbjct: 32678 gcacgaaagcaatgggttgtcgcaggagctgatgatatgtatatccgtgtatacaat 32622
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>dbj|AP003487.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0007O20
          Length = 147363

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                         
Query: 190   agaggaagctcgcgcagaggtcggagagggtcaagtccgcggatctgcatccgacagagc 249
             |||||||| | |||||  ||||||||||||||||||| | ||||||||| || || ||||
Sbjct: 49968 agaggaagtttgcgcaacggtcggagagggtcaagtcggtggatctgcaccccacggagc 49909

                  
Query: 250   catgg 254
             |||||
Sbjct: 49908 catgg 49904



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                     
Query: 259   tgtcgagtctttactcggggagtgtctgcatctggaacta 298
             |||||||||||||||| ||||| || ||||||||| ||||
Sbjct: 49776 tgtcgagtctttactccgggagcgtgtgcatctgggacta 49737



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 305   gcagacaatggtgaaatcatttgaagt 331
             ||||||||||||||| |||||||||||
Sbjct: 49008 gcagacaatggtgaagtcatttgaagt 48982
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>ref|XM_516784.1| PREDICTED: Pan troglodytes similar to coatomer protein complex,
           subunit beta 2 (beta prime); coatomer binding complex,
           beta prime subunit; betaprime-COP (LOC460734), mRNA
          Length = 2802

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 230 ggatctgcatccgacagagccatggattttgtcgagtctttac 272
           |||||||||||| |||||||||||||| ||| | |||||||||
Sbjct: 144 ggatctgcatcctacagagccatggatgttggcaagtctttac 186
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>gb|BC000326.2| Homo sapiens coatomer protein complex, subunit beta 2 (beta prime),
           mRNA (cDNA clone MGC:8486 IMAGE:2821998), complete cds
          Length = 3088

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 230 ggatctgcatccgacagagccatggattttgtcgagtctttac 272
           |||||||||||| |||||||||||||| ||| | |||||||||
Sbjct: 139 ggatctgcatcctacagagccatggatgttggcaagtctttac 181
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>ref|NM_004766.1| Homo sapiens coatomer protein complex, subunit beta 2 (beta prime)
           (COPB2), mRNA
          Length = 3067

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 230 ggatctgcatccgacagagccatggattttgtcgagtctttac 272
           |||||||||||| |||||||||||||| ||| | |||||||||
Sbjct: 131 ggatctgcatcctacagagccatggatgttggcaagtctttac 173
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>emb|X70476.1|HSCTMRSU H.sapiens subunit of coatomer complex
          Length = 3067

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 230 ggatctgcatccgacagagccatggattttgtcgagtctttac 272
           |||||||||||| |||||||||||||| ||| | |||||||||
Sbjct: 131 ggatctgcatcctacagagccatggatgttggcaagtctttac 173
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>emb|CR860632.1| Pongo pygmaeus mRNA; cDNA DKFZp459D1624 (from clone DKFZp459D1624)
          Length = 3086

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 230 ggatctgcatccgacagagccatggattttgtcgagtctttac 272
           |||||||||||| |||||||||||||| ||| | |||||||||
Sbjct: 140 ggatctgcatcctacagagccatggatgttggcaagtctttac 182
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>dbj|AK128561.1| Homo sapiens cDNA FLJ46720 fis, clone TRACH3018519, weakly  similar
           to Coatomer beta' subunit
          Length = 3530

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 230 ggatctgcatccgacagagccatggattttgtcgagtctttac 272
           |||||||||||| |||||||||||||| ||| | |||||||||
Sbjct: 160 ggatctgcatcctacagagccatggatgttggcaagtctttac 202
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>gb|AC024933.34| Homo sapiens 3 BAC RP11-219D15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 169659

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                         
Query: 230    ggatctgcatccgacagagccatggattttgtcgagtctttac 272
              |||||||||||| |||||||||||||| ||| | |||||||||
Sbjct: 127842 ggatctgcatcctacagagccatggatgttggcaagtctttac 127800
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>ref|XM_534283.2| PREDICTED: Canis familiaris similar to coatomer protein complex,
           subunit beta 2 (beta prime) (LOC477088), mRNA
          Length = 3086

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 83/102 (81%)
 Strand = Plus / Plus

                                                                       
Query: 230 ggatctgcatccgacagagccatggattttgtcgagtctttactcggggagtgtctgcat 289
           |||| ||||||| |||||||||||||| ||| | |||||||||   || ||||| ||| |
Sbjct: 147 ggatttgcatcctacagagccatggatgttggcaagtctttacaatggcagtgtgtgcgt 206

                                                     
Query: 290 ctggaactaccaaacgcagacaatggtgaaatcatttgaagt 331
            |||||  |  |||| |||||| |||||||| ||||||||||
Sbjct: 207 ttggaatcatgaaacacagacattggtgaaaacatttgaagt 248
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>ref|NM_112468.2| Arabidopsis thaliana protein transporter AT3G15980 transcript
           variant AT3G15980.2 mRNA, complete cds
          Length = 3067

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 351 tcggctaaatttattgcacgaaagcaatgggtcgttgctggtgccgatgatatgtttatc 410
           ||||| || |||||| | || ||||||||||| || ||||| || ||||||||||  |||
Sbjct: 316 tcggccaagtttattccgcgcaagcaatgggttgtggctggagcggatgatatgtacatc 375

                       
Query: 411 cgtgtgtacaat 422
           ||||| ||||||
Sbjct: 376 cgtgtatacaat 387
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>ref|NM_180262.1| Arabidopsis thaliana protein transporter AT3G15980 transcript
           variant AT3G15980.3 mRNA, complete cds
          Length = 2986

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 351 tcggctaaatttattgcacgaaagcaatgggtcgttgctggtgccgatgatatgtttatc 410
           ||||| || |||||| | || ||||||||||| || ||||| || ||||||||||  |||
Sbjct: 316 tcggccaagtttattccgcgcaagcaatgggttgtggctggagcggatgatatgtacatc 375

                       
Query: 411 cgtgtgtacaat 422
           ||||| ||||||
Sbjct: 376 cgtgtatacaat 387
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>ref|NM_180261.1| Arabidopsis thaliana protein transporter AT3G15980 transcript
           variant AT3G15980.1 mRNA, complete cds
          Length = 3104

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 351 tcggctaaatttattgcacgaaagcaatgggtcgttgctggtgccgatgatatgtttatc 410
           ||||| || |||||| | || ||||||||||| || ||||| || ||||||||||  |||
Sbjct: 316 tcggccaagtttattccgcgcaagcaatgggttgtggctggagcggatgatatgtacatc 375

                       
Query: 411 cgtgtgtacaat 422
           ||||| ||||||
Sbjct: 376 cgtgtatacaat 387
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>gb|AY120786.1| Arabidopsis thaliana putative coatomer complex subunit (At3g15980)
           mRNA, complete cds
          Length = 3103

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 351 tcggctaaatttattgcacgaaagcaatgggtcgttgctggtgccgatgatatgtttatc 410
           ||||| || |||||| | || ||||||||||| || ||||| || ||||||||||  |||
Sbjct: 316 tcggccaagtttattccgcgcaagcaatgggttgtggctggagcggatgatatgtacatc 375

                       
Query: 411 cgtgtgtacaat 422
           ||||| ||||||
Sbjct: 376 cgtgtatacaat 387
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>dbj|AB012247.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MSL1
          Length = 79355

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                        
Query: 351  tcggctaaatttattgcacgaaagcaatgggtcgttgctggtgccgatgatatgtttatc 410
            ||||| || |||||| | || ||||||||||| || ||||| || ||||||||||  |||
Sbjct: 9434 tcggccaagtttattccgcgcaagcaatgggttgtggctggagcggatgatatgtacatc 9375

                        
Query: 411  cgtgtgtacaat 422
            ||||| ||||||
Sbjct: 9374 cgtgtatacaat 9363
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>gb|BT001201.1| Arabidopsis thaliana putative coatomer complex subunit (At3g15980)
           mRNA, complete cds
          Length = 2789

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 351 tcggctaaatttattgcacgaaagcaatgggtcgttgctggtgccgatgatatgtttatc 410
           ||||| || |||||| | || ||||||||||| || ||||| || ||||||||||  |||
Sbjct: 184 tcggccaagtttattccgcgcaagcaatgggttgtggctggagcggatgatatgtacatc 243

                       
Query: 411 cgtgtgtacaat 422
           ||||| ||||||
Sbjct: 244 cgtgtatacaat 255
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>ref|NM_015827.1| Mus musculus coatomer protein complex, subunit beta 2 (beta prime)
           (Copb2), mRNA
          Length = 3044

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 230 ggatctgcatccgacagagccatggattttgtcgagtctttac 272
           |||| ||||||| |||||||||||||| ||| | |||||||||
Sbjct: 154 ggatttgcatcccacagagccatggatgttggctagtctttac 196
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>gb|AC117214.3| Mus musculus BAC clone RP23-307B15 from chromosome 9, complete sequence
          Length = 219833

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                         
Query: 230    ggatctgcatccgacagagccatggattttgtcgagtctttac 272
              |||| ||||||| |||||||||||||| ||| | |||||||||
Sbjct: 211991 ggatttgcatcccacagagccatggatgttggctagtctttac 212033
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>emb|X72756.1|BTBETPCOP B.taurus bt betaprime cop mRNA
          Length = 2950

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 230 ggatctgcatccgacagagccatggattttgtcgagtctttac 272
           |||| ||||||| |||||||||||||| ||| | |||||||||
Sbjct: 98  ggatttgcatcctacagagccatggatgttggccagtctttac 140
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>dbj|AK153352.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830144P05 product:coatomer
           protein complex, subunit beta 2 (beta prime), full
           insert sequence
          Length = 3044

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 230 ggatctgcatccgacagagccatggattttgtcgagtctttac 272
           |||| ||||||| |||||||||||||| ||| | |||||||||
Sbjct: 154 ggatttgcatcccacagagccatggatgttggctagtctttac 196
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>dbj|AB169906.1| Macaca fascicularis brain cDNA, clone: QtrA-12583, similar to human
           coatomer protein complex, subunit beta 2 (beta
           prime)(COPB2), mRNA, RefSeq: NM_004766.1
          Length = 3114

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 230 ggatctgcatccgacagagccatggattttgtcgagtctttac 272
           |||| ||||||| |||||||||||||| ||| | |||||||||
Sbjct: 169 ggatttgcatcctacagagccatggatgttggcaagtctttac 211
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>dbj|AK088064.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
           full-length enriched library, clone:E430003B05
           product:coatomer protein complex, subunit beta 2 (beta
           prime), full insert sequence
          Length = 3044

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 230 ggatctgcatccgacagagccatggattttgtcgagtctttac 272
           |||| ||||||| |||||||||||||| ||| | |||||||||
Sbjct: 154 ggatttgcatcccacagagccatggatgttggctagtctttac 196
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>ref|NM_174281.2| Bos taurus coatomer protein complex, subunit beta 2 (beta prime)
           (COPB2), mRNA
          Length = 2950

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 230 ggatctgcatccgacagagccatggattttgtcgagtctttac 272
           |||| ||||||| |||||||||||||| ||| | |||||||||
Sbjct: 98  ggatttgcatcctacagagccatggatgttggccagtctttac 140
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>gb|BC006675.1| Mus musculus coatomer protein complex, subunit beta 2 (beta prime),
           mRNA (cDNA clone MGC:6378 IMAGE:3499585), complete cds
          Length = 3081

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 230 ggatctgcatccgacagagccatggattttgtcgagtctttac 272
           |||| ||||||| |||||||||||||| ||| | |||||||||
Sbjct: 140 ggatttgcatcccacagagccatggatgttggctagtctttac 182
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>gb|AC140449.3| Mus musculus BAC clone RP24-116C1 from 9, complete sequence
          Length = 222299

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                         
Query: 230    ggatctgcatccgacagagccatggattttgtcgagtctttac 272
              |||| ||||||| |||||||||||||| ||| | |||||||||
Sbjct: 209281 ggatttgcatcccacagagccatggatgttggctagtctttac 209239
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>gb|BC010842.1| Mus musculus cDNA clone IMAGE:3485707, containing frame-shift
           errors
          Length = 3062

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 230 ggatctgcatccgacagagccatggattttgtcgagtctttac 272
           |||| ||||||| |||||||||||||| ||| | |||||||||
Sbjct: 143 ggatttgcatcccacagagccatggatgttggctagtctttac 185
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>gb|AC117819.11| Mus musculus chromosome 1, clone RP24-576P17, complete sequence
          Length = 117693

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 307  agacaatggtgaaatcatttgaagtcaca 335
            |||||||||||||| ||||||||| ||||
Sbjct: 7011 agacaatggtgaaagcatttgaagccaca 7039
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>gb|AC148006.4| Mus musculus BAC clone RP23-298P21 from chromosome 19, complete sequence
          Length = 209327

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 373    agcaatgggtcgttgctggtg 393
              |||||||||||||||||||||
Sbjct: 100041 agcaatgggtcgttgctggtg 100061
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>gb|AC116744.8| Mus musculus chromosome 19, clone RP23-79B16, complete sequence
          Length = 236661

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 373    agcaatgggtcgttgctggtg 393
              |||||||||||||||||||||
Sbjct: 182965 agcaatgggtcgttgctggtg 182945
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>gb|AC163268.4| Mus musculus chromosome 1, clone RP24-63C6, complete sequence
          Length = 224994

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 307    agacaatggtgaaatcatttgaagtcaca 335
              |||||||||||||| ||||||||| ||||
Sbjct: 108564 agacaatggtgaaagcatttgaagccaca 108536
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>gb|AC121551.11| Mus musculus chromosome 1, clone RP24-144H23, complete sequence
          Length = 168683

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   gtctttactcggggagtgtc 284
             ||||||||||||||||||||
Sbjct: 33895 gtctttactcggggagtgtc 33876
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>ref|XM_423797.1| PREDICTED: Gallus gallus similar to sodium bicarbonate transporter 4
            isoform b (LOC426127), mRNA
          Length = 3648

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 180  ttggatatcaagaggaagct 199
            ||||||||||||||||||||
Sbjct: 1459 ttggatatcaagaggaagct 1478
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>ref|XM_423758.1| PREDICTED: Gallus gallus similar to sodium bicarbonate transporter
           4 isoform a (LOC426081), partial mRNA
          Length = 1277

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 180 ttggatatcaagaggaagct 199
           ||||||||||||||||||||
Sbjct: 20  ttggatatcaagaggaagct 39
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>gb|AC145952.3| Pan troglodytes BAC clone RP43-18D16 from 7, complete sequence
          Length = 160354

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 275   ggggagtgtctgcatctggaacta 298
             |||| |||||||||||||||||||
Sbjct: 89729 ggggggtgtctgcatctggaacta 89752
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>gb|AY808633.1| Schistosoma japonicum SJCHGC04487 protein mRNA, partial cds
          Length = 820

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 313 tggtgaaatcatttgaagtc 332
           ||||||||||||||||||||
Sbjct: 578 tggtgaaatcatttgaagtc 559
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>gb|AC156273.7| Mus musculus 10 BAC RP24-275P22 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 200541

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 285   tgcatctggaactaccaaac 304
             ||||||||||||||||||||
Sbjct: 95916 tgcatctggaactaccaaac 95897
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>gb|AC131177.9| Mus musculus chromosome 1, clone RP23-374I10, complete sequence
          Length = 189761

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 265   gtctttactcggggagtgtc 284
             ||||||||||||||||||||
Sbjct: 10783 gtctttactcggggagtgtc 10802


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,529,319
Number of Sequences: 3902068
Number of extensions: 2529319
Number of successful extensions: 45371
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45245
Number of HSP's gapped (non-prelim): 126
length of query: 422
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 400
effective length of database: 17,147,199,772
effective search space: 6858879908800
effective search space used: 6858879908800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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