ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl09d06 |
|---|---|
| Clone Library Name | barley_pub |
>PKN2_COREF (Q8FUI4) Serine/threonine protein kinases drp72 (EC 2.7.11.1)| Length = 520 Score = 30.8 bits (68), Expect = 1.8 Identities = 16/31 (51%), Positives = 18/31 (58%) Frame = +1 Query: 1 TQTQTPRNQQRHPARPTLAPPPSHPSRQNHP 93 TQT TP + PTLAPPP P+RQ P Sbjct: 379 TQTVTP-TETTTSEEPTLAPPPVQPTRQPVP 408
>GAG_AVIMC (P03323) Gag polyprotein [Contains: Core protein p19; Core protein| p10; Core protein p27] Length = 453 Score = 30.4 bits (67), Expect = 2.3 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -3 Query: 220 APPPPRTARGVFPSVAKRGRREINGG 143 APPPP G++PS+A G ++ GG Sbjct: 170 APPPPYVGSGLYPSLAGVGEQQGQGG 195
>GAG_AVEV2 (P06937) Gag polyprotein (Core polyprotein) [Contains: Core protein| p19 beta; Core protein p10] (Fragment) Length = 188 Score = 30.4 bits (67), Expect = 2.3 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -3 Query: 220 APPPPRTARGVFPSVAKRGRREINGG 143 APPPP G++PS+A G ++ GG Sbjct: 119 APPPPYVGSGLYPSLAGVGEQQGQGG 144
>GAG_FUJSV (P03326) Gag polyprotein [Contains: Core protein p19; Core protein| p10; Core protein p27] Length = 309 Score = 30.4 bits (67), Expect = 2.3 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -3 Query: 220 APPPPRTARGVFPSVAKRGRREINGG 143 APPPP G++PS+A G ++ GG Sbjct: 166 APPPPYVGSGLYPSLAGVGEQQGQGG 191
>GAG_RSVP (P03322) Gag polyprotein [Contains: Core protein p19; Core protein| p2A; Core protein p2B; Core protein p10; Capsid protein p27; Inner coat protein p12; Protease p15 (EC 3.4.23.-)] Length = 701 Score = 30.4 bits (67), Expect = 2.3 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -3 Query: 220 APPPPRTARGVFPSVAKRGRREINGG 143 APPPP G++PS+A G ++ GG Sbjct: 170 APPPPYVGSGLYPSLAGVGEQQGQGG 195
>GAG_AVEV1 (P06936) Gag polyprotein (Core polyprotein) [Contains: Core protein| p19; Core protein p23; Core protein p2; Core protein p10] (Fragment) Length = 239 Score = 30.4 bits (67), Expect = 2.3 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -3 Query: 220 APPPPRTARGVFPSVAKRGRREINGG 143 APPPP G++PS+A G ++ GG Sbjct: 170 APPPPYVGSGLYPSLAGVGEQQGQGG 195
>GAGC_AVISC (P05433) P47(GAG-CRK) protein| Length = 440 Score = 30.4 bits (67), Expect = 2.3 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -3 Query: 220 APPPPRTARGVFPSVAKRGRREINGG 143 APPPP G++PS+A G ++ GG Sbjct: 172 APPPPYVGSGLYPSLAGVGEQQGQGG 197
>NCAP_BSCR3 (Q3I5I7) Nucleocapsid protein (N structural protein) (NC)| Length = 421 Score = 30.0 bits (66), Expect = 3.1 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +3 Query: 183 GNTPRAVRGGGGAS*LSCLVVDAATSARIAVGGREQAQ 296 GN+P + GGG + L+ L++D V GR Q Q Sbjct: 204 GNSPARMASGGGETALALLLLDRLNQLESKVSGRSQQQ 241
>GAG_AVIMD (P06444) Gag polyprotein [Contains: Core protein p19; Core protein| p10; Core protein p27] Length = 453 Score = 29.3 bits (64), Expect = 5.2 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -3 Query: 220 APPPPRTARGVFPSVAKRGRREINGG 143 APPPP G++PS+A G + GG Sbjct: 170 APPPPYVGSGLYPSLAGVGELQGQGG 195
>PTN23_HUMAN (Q9H3S7) Tyrosine-protein phosphatase non-receptor type 23 (EC| 3.1.3.48) (His-domain-containing protein tyrosine phosphatase) (HD-PTP) (Protein tyrosine phosphatase TD14) (PTP-TD14) Length = 1636 Score = 28.9 bits (63), Expect = 6.8 Identities = 15/32 (46%), Positives = 17/32 (53%) Frame = -1 Query: 444 PLQRHAGPRGPSGPTARPRRGRQPQPHADAYP 349 P Q H P+G A PR G QPQPH +P Sbjct: 933 PAQHHFSSGIPAGFPA-PRIGPQPQPHPQPHP 963
>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor| Length = 1372 Score = 25.8 bits (55), Expect(2) = 7.9 Identities = 10/20 (50%), Positives = 11/20 (55%) Frame = -1 Query: 426 GPRGPSGPTARPRRGRQPQP 367 GP GPSGP + R P P Sbjct: 1060 GPAGPSGPIGKDGRSGHPGP 1079 Score = 21.2 bits (43), Expect(2) = 7.9 Identities = 9/16 (56%), Positives = 10/16 (62%) Frame = -1 Query: 450 LHPLQRHAGPRGPSGP 403 LH Q GP GP+GP Sbjct: 1043 LHGDQGAPGPVGPAGP 1058
>SAV_DROME (Q9VCR6) Scaffold protein salvador (Shar-pei)| Length = 608 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +1 Query: 4 QTQTPRNQQRHPARPTLAPPPSHPSRQNHP 93 Q+Q P Q H + P P PSHP ++HP Sbjct: 99 QSQMPLQQHSH-SHPHSLPHPSHPHVRSHP 127
>RIMB1_MOUSE (Q7TNF8) Peripheral-type benzodiazepine receptor-associated protein| 1 (PRAX-1) (Peripheral benzodiazepine receptor-interacting protein) (PBR-IP) (RIM-binding protein 1) (RIM-BP1) Length = 1846 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = +1 Query: 4 QTQTPRNQQRHPARPTLAPPPSHPSRQNHP 93 Q Q QR P RP +P P+ PSR P Sbjct: 274 QRQIALRNQREPLRPARSPGPTAPSRVGAP 303
>CO1A2_RANCA (O42350) Collagen alpha-2(I) chain precursor| Length = 1355 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%) Frame = -1 Query: 426 GPRGPSGPTARP-RRGRQPQPHA 361 GPRGPSGP+ P + GR P A Sbjct: 1042 GPRGPSGPSGPPGKEGRSGHPGA 1064
>DCBD2_MOUSE (Q91ZV3) Discoidin, CUB and LCCL domain-containing protein 2| precursor (Endothelial and smooth muscle cell-derived neuropilin-like protein) Length = 769 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = -1 Query: 444 PLQRHAGPRGPSGPTARPRRGRQPQPHADAYP 349 PL+ P+GP GP A GR P A P Sbjct: 6 PLRAARSPQGPGGPAAPAATGRAALPSAGCCP 37 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,981,070 Number of Sequences: 219361 Number of extensions: 898596 Number of successful extensions: 5040 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3509 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4954 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
