ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl09d03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AHM3_ARATH (Q9SZW4) Putative cadmium/zinc-transporting ATPase 3 ... 66 4e-11
2AHM2_ARATH (O64474) Putative cadmium/zinc-transporting ATPase 2 ... 66 4e-11
3AHM4_ARATH (Q9SZW5) Putative cadmium/zinc-transporting ATPase 4 ... 65 8e-11
4SAM68_MOUSE (Q60749) KH domain-containing, RNA-binding, signal t... 29 4.6

>AHM3_ARATH (Q9SZW4) Putative cadmium/zinc-transporting ATPase 3 (EC 3.6.3.3)|
           (EC 3.6.3.5)
          Length = 951

 Score = 65.9 bits (159), Expect = 4e-11
 Identities = 36/89 (40%), Positives = 45/89 (50%)
 Frame = +1

Query: 136 KLEKSYFDVLGICCPSXXXXXXXXXXXXAGXXXXXXXXXXXXXXXLHDAAAISQAQIVRA 315
           K+ KSYFDVLGICC S             G               +HD   +SQ QIV+A
Sbjct: 5   KMTKSYFDVLGICCTSEVPLIENILNSMDGVKEFSVIVPSRTVIVVHDTLILSQFQIVKA 64

Query: 316 LNGARLEASVRAYGGAGQSKVTNXWPSPY 402
           LN A+LEA+VR     G++   N WPSP+
Sbjct: 65  LNQAQLEANVRV---TGETNFKNKWPSPF 90



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>AHM2_ARATH (O64474) Putative cadmium/zinc-transporting ATPase 2 (EC 3.6.3.3)|
           (EC 3.6.3.5)
          Length = 1172

 Score = 65.9 bits (159), Expect = 4e-11
 Identities = 37/89 (41%), Positives = 45/89 (50%)
 Frame = +1

Query: 136 KLEKSYFDVLGICCPSXXXXXXXXXXXXAGXXXXXXXXXXXXXXXLHDAAAISQAQIVRA 315
           KL+KSYFDVLGICC S             G               +HD+  IS  QI +A
Sbjct: 15  KLQKSYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKA 74

Query: 316 LNGARLEASVRAYGGAGQSKVTNXWPSPY 402
           LN ARLEA+VR     G++   N WPSP+
Sbjct: 75  LNEARLEANVRV---NGETSFKNKWPSPF 100



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>AHM4_ARATH (Q9SZW5) Putative cadmium/zinc-transporting ATPase 4 (EC 3.6.3.3)|
           (EC 3.6.3.5)
          Length = 760

 Score = 65.1 bits (157), Expect = 8e-11
 Identities = 36/88 (40%), Positives = 45/88 (51%)
 Frame = +1

Query: 139 LEKSYFDVLGICCPSXXXXXXXXXXXXAGXXXXXXXXXXXXXXXLHDAAAISQAQIVRAL 318
           L+ SYFDV+GICC S             G               +HD   IS  QIV+AL
Sbjct: 12  LQTSYFDVVGICCSSEVSIVGNVLRQVDGVKEFSVIVPSRTVIVVHDTFLISPLQIVKAL 71

Query: 319 NGARLEASVRAYGGAGQSKVTNXWPSPY 402
           N ARLEASVR Y   G++ + + WPSP+
Sbjct: 72  NQARLEASVRPY---GETSLKSQWPSPF 96



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>SAM68_MOUSE (Q60749) KH domain-containing, RNA-binding, signal|
           transduction-associated protein 1 (p21 Ras
           GTPase-activating protein-associated p62)
           (GAP-associated tyrosine phosphoprotein p62)
           (Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
          Length = 443

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = +3

Query: 66  ASPSVILHPSAPSVILHPPGGGG 134
           A PSV L PS PS + H P GGG
Sbjct: 26  AHPSVRLTPSRPSPLPHRPRGGG 48


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,740,387
Number of Sequences: 219361
Number of extensions: 410284
Number of successful extensions: 1686
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1680
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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