ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl09d01 |
|---|---|
| Clone Library Name | barley_pub |
>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1| Length = 1051 Score = 94.4 bits (233), Expect(2) = 7e-21 Identities = 49/66 (74%), Positives = 49/66 (74%) Frame = +1 Query: 208 MLPRKREIVAGEVEDLQKKXXXXXXXXXXXXXXXXMARRGNEIDEDLHSRQLAVYGRETM 387 MLPRKREIVAGEVEDLQKK MA RGNEIDEDLHSRQLAVYGRETM Sbjct: 1 MLPRKREIVAGEVEDLQKKTRAGEGEVTREEGDAAMAGRGNEIDEDLHSRQLAVYGRETM 60 Query: 388 KRLFGS 405 KRLFGS Sbjct: 61 KRLFGS 66 Score = 24.6 bits (52), Expect(2) = 7e-21 Identities = 11/12 (91%), Positives = 12/12 (100%) Frame = +3 Query: 405 HVLVSGLQGLGA 440 +VLVSGLQGLGA Sbjct: 67 NVLVSGLQGLGA 78
>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2| Length = 1051 Score = 92.0 bits (227), Expect(2) = 3e-20 Identities = 48/66 (72%), Positives = 48/66 (72%) Frame = +1 Query: 208 MLPRKREIVAGEVEDLQKKXXXXXXXXXXXXXXXXMARRGNEIDEDLHSRQLAVYGRETM 387 MLPRKREIVAGEVEDLQKK MA RGNEIDEDLHSRQLAVYGRETM Sbjct: 1 MLPRKREIVAGEVEDLQKKTRAGEGEATREEGDAAMAGRGNEIDEDLHSRQLAVYGRETM 60 Query: 388 KRLFGS 405 K LFGS Sbjct: 61 KPLFGS 66 Score = 24.6 bits (52), Expect(2) = 3e-20 Identities = 11/12 (91%), Positives = 12/12 (100%) Frame = +3 Query: 405 HVLVSGLQGLGA 440 +VLVSGLQGLGA Sbjct: 67 NVLVSGLQGLGA 78
>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3| Length = 1053 Score = 50.1 bits (118), Expect(2) = 4e-07 Identities = 23/25 (92%), Positives = 24/25 (96%) Frame = +1 Query: 331 EIDEDLHSRQLAVYGRETMKRLFGS 405 EIDEDLHSRQLAVYGRETM+RLF S Sbjct: 45 EIDEDLHSRQLAVYGRETMRRLFAS 69 Score = 22.3 bits (46), Expect(2) = 4e-07 Identities = 10/11 (90%), Positives = 10/11 (90%) Frame = +3 Query: 408 VLVSGLQGLGA 440 VLVSGL GLGA Sbjct: 71 VLVSGLNGLGA 81
>UBE1_RABIT (Q29504) Ubiquitin-activating enzyme E1| Length = 1058 Score = 35.8 bits (81), Expect = 0.049 Identities = 23/38 (60%), Positives = 26/38 (68%), Gaps = 2/38 (5%) Frame = +1 Query: 313 MARRGNE--IDEDLHSRQLAVYGRETMKRLFGSTSSSL 420 MA+ G+E IDE L+SRQL V G E MKRL TSS L Sbjct: 41 MAKNGSEADIDEGLYSRQLYVLGHEAMKRL--QTSSVL 76
>UBE1_HUMAN (P22314) Ubiquitin-activating enzyme E1 (A1S9 protein)| Length = 1058 Score = 35.8 bits (81), Expect = 0.049 Identities = 23/38 (60%), Positives = 26/38 (68%), Gaps = 2/38 (5%) Frame = +1 Query: 313 MARRGNE--IDEDLHSRQLAVYGRETMKRLFGSTSSSL 420 MA+ G+E IDE L+SRQL V G E MKRL TSS L Sbjct: 41 MAKNGSEADIDEGLYSRQLYVLGHEAMKRL--QTSSVL 76
>UBE1_MOUSE (Q02053) Ubiquitin-activating enzyme E1 1| Length = 1058 Score = 33.9 bits (76), Expect = 0.18 Identities = 22/38 (57%), Positives = 25/38 (65%), Gaps = 2/38 (5%) Frame = +1 Query: 313 MARRGNE--IDEDLHSRQLAVYGRETMKRLFGSTSSSL 420 MA+ G+E IDE L+SRQL V G E MK L TSS L Sbjct: 41 MAKNGSEADIDESLYSRQLYVLGHEAMKML--QTSSVL 76
>UBE1L_HUMAN (P41226) Ubiquitin-activating enzyme E1 homolog (D8)| Length = 1011 Score = 28.1 bits (61), Expect(2) = 0.22 Identities = 12/24 (50%), Positives = 18/24 (75%) Frame = +1 Query: 334 IDEDLHSRQLAVYGRETMKRLFGS 405 +DE+L+SRQL V G M+R+ G+ Sbjct: 10 LDEELYSRQLYVLGSPAMQRIQGA 33 Score = 24.3 bits (51), Expect(2) = 0.22 Identities = 11/11 (100%), Positives = 11/11 (100%) Frame = +3 Query: 408 VLVSGLQGLGA 440 VLVSGLQGLGA Sbjct: 35 VLVSGLQGLGA 45
>UBA1_SCHPO (O94609) Ubiquitin-activating enzyme E1 1 (Poly(A)+ RNA transport| protein 3) Length = 1012 Score = 30.8 bits (68), Expect = 1.6 Identities = 14/23 (60%), Positives = 17/23 (73%) Frame = +1 Query: 328 NEIDEDLHSRQLAVYGRETMKRL 396 N IDE L+SRQL V G E MK++ Sbjct: 13 NTIDEGLYSRQLYVLGHEAMKQM 35
>CP2D6_HUMAN (P10635) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6) (P450-DB1)| (Debrisoquine 4-hydroxylase) Length = 497 Score = 30.8 bits (68), Expect = 1.6 Identities = 22/49 (44%), Positives = 26/49 (53%) Frame = -1 Query: 396 EALHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 250 EAL LA I +A +LVDL+ + PG LPLPG G LL V Sbjct: 4 EALVPLAVI---VAIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>YBHO_SALTY (Q8ZQP4) Putative cardiolipin synthetase ybhO (EC 2.7.8.-)| (Cardiolipin synthase) (CL synthase) Length = 413 Score = 29.6 bits (65), Expect = 3.5 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = +3 Query: 345 PAQSPARRLWPRDHEAPLRLH 407 P QSPARR W R H+A H Sbjct: 168 PGQSPARRWWKRHHQAEENRH 188
>YBHO_SALTI (Q8Z883) Putative cardiolipin synthetase ybhO (EC 2.7.8.-)| (Cardiolipin synthase) (CL synthase) Length = 413 Score = 29.6 bits (65), Expect = 3.5 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = +3 Query: 345 PAQSPARRLWPRDHEAPLRLH 407 P QSPARR W R H+A H Sbjct: 168 PGQSPARRWWKRHHQAEENRH 188
>UBA1_YEAST (P22515) Ubiquitin-activating enzyme E1 1| Length = 1024 Score = 29.6 bits (65), Expect = 3.5 Identities = 13/22 (59%), Positives = 17/22 (77%) Frame = +1 Query: 331 EIDEDLHSRQLAVYGRETMKRL 396 EIDE L+SRQL V G+E M ++ Sbjct: 13 EIDESLYSRQLYVLGKEAMLKM 34
>CP2DQ_RAT (P10634) Cytochrome P450 2D26 (EC 1.14.14.1) (CYPIID26) (P450-DB2)| (P450-CMF2) (Debrisoquine 4-hydroxylase) Length = 500 Score = 29.3 bits (64), Expect = 4.5 Identities = 16/32 (50%), Positives = 19/32 (59%) Frame = -1 Query: 345 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 250 +LVDLV + PG +PLPG G LLQV Sbjct: 21 LLVDLVHRHKFWTAHYPPGPVPLPGLGNLLQV 52
>CP2DP_PIG (O46658) Cytochrome P450 2D25 (EC 1.14.14.-) (CYPIID25) (Vitamin| D(3) 25-hydroxylase) Length = 499 Score = 29.3 bits (64), Expect = 4.5 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -1 Query: 345 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 250 +LVDL+ + PG +PLPG G LLQV Sbjct: 20 LLVDLMHRRSRWAPRYPPGPMPLPGLGNLLQV 51
>APGM_SULSO (Q980A0) 2,3-bisphosphoglycerate-independent phosphoglycerate| mutase (EC 5.4.2.1) (Phosphoglyceromutase) (BPG-independent PGAM) (aPGAM) Length = 414 Score = 29.3 bits (64), Expect = 4.5 Identities = 21/43 (48%), Positives = 22/43 (51%), Gaps = 10/43 (23%) Frame = -1 Query: 432 DPEVQRRGRGAEEAL-------HGLAAIDGELATVQ---VLVD 334 DP V RGRGA EAL HG A G ATV V+VD Sbjct: 70 DPHVYYRGRGAFEALGAGATLSHGDVAFRGNFATVNNDLVVVD 112
>CP2DH_MACFA (Q29488) Cytochrome P450 2D17 (EC 1.14.14.1) (CYPIID17)| Length = 497 Score = 29.3 bits (64), Expect = 4.5 Identities = 18/47 (38%), Positives = 23/47 (48%) Frame = -1 Query: 390 LHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 250 L L + +A +LVDL+ + PG LPLPG G LL V Sbjct: 3 LDALVPLAVTVAIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2D6_PANTR (Q2XNC8) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6)| Length = 497 Score = 29.3 bits (64), Expect = 4.5 Identities = 21/49 (42%), Positives = 25/49 (51%) Frame = -1 Query: 396 EALHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 250 EAL LA I + +LVDL+ + PG LPLPG G LL V Sbjct: 4 EALVPLAVI---VTIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2D6_PANPA (Q2XNC9) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6)| Length = 497 Score = 29.3 bits (64), Expect = 4.5 Identities = 21/49 (42%), Positives = 25/49 (51%) Frame = -1 Query: 396 EALHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 250 EAL LA I + +LVDL+ + PG LPLPG G LL V Sbjct: 4 EALVPLAVI---VTIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>KCC2D_HUMAN (Q13557) Calcium/calmodulin-dependent protein kinase type II delta| chain (EC 2.7.11.17) (CaM-kinase II delta chain) (CaM kinase II delta subunit) (CaMK-II delta subunit) Length = 499 Score = 28.9 bits (63), Expect = 5.9 Identities = 12/28 (42%), Positives = 13/28 (46%) Frame = -3 Query: 424 SPETRTWSRRGASWSRGHRRRAGDCAGP 341 S ETR W RR W H R+G P Sbjct: 449 SEETRVWHRRDGKWQNVHFHRSGSPTVP 476
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 28.5 bits (62), Expect = 7.7 Identities = 15/35 (42%), Positives = 16/35 (45%) Frame = +2 Query: 5 PVLRSHPRNPRRTVPRLLPSPTRQANPRFRGGRTR 109 P R P RRT PR +P P R R G R R Sbjct: 313 PSPRRRPSPRRRTPPRRMPPPPRHRRSRSPGRRRR 347
>KCC2D_RAT (P15791) Calcium/calmodulin-dependent protein kinase type II delta| chain (EC 2.7.11.17) (CaM-kinase II delta chain) (CaM kinase II delta subunit) (CaMK-II delta subunit) Length = 533 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/28 (42%), Positives = 13/28 (46%) Frame = -3 Query: 424 SPETRTWSRRGASWSRGHRRRAGDCAGP 341 S ETR W RR W H R+G P Sbjct: 483 SEETRVWHRRDGKWQNIHFHRSGSPTVP 510
>CP2DJ_CALJA (O18992) Cytochrome P450 2D19 (EC 1.14.14.1) (CYPIID19) (P450| CM2D-1) Length = 497 Score = 28.5 bits (62), Expect = 7.7 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = -1 Query: 390 LHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 250 L L + +A +LVDL+ + PG +PLPG G LL V Sbjct: 3 LDALVPLAVTVAIFVLLVDLMHRRQRWAARYPPGPMPLPGLGNLLHV 49 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,796,006 Number of Sequences: 219361 Number of extensions: 892501 Number of successful extensions: 3316 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3118 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3315 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
