ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl09c12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY532594.1| Triticum aestivum minichromosomal maintenance fac... 650 0.0
2gb|AY532593.1| Triticum aestivum minichromosomal maintenance fac... 432 e-118
3dbj|AK121422.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 8e-58
4gb|AC131343.4| Oryza sativa (japonica cultivar-group) chromosome... 180 3e-42
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 180 3e-42
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 180 3e-42
7gb|AY111848.1| Zea mays CL12933_1 mRNA sequence 44 0.38
8ref|XM_883457.1| Leishmania major strain Friedlin hypothetical p... 42 1.5
9emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4,... 42 1.5
10gb|AY861166.1| Cottus gobio microsatellite Cott105 sequence 42 1.5
11emb|CR555306.1| Azoarcus sp. EbN1 complete genome 42 1.5
12gb|AC090097.5| Homo sapiens chromosome 8, clone RP11-369C6, comp... 42 1.5
13gb|AC092472.3| Homo sapiens chromosome 8 clone RP1-96P7 map map ... 42 1.5
14gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 42 1.5
15gb|AC008863.8| Homo sapiens chromosome 5 clone CTD-2192G22, comp... 42 1.5
16ref|NM_209563.1| Eremothecium gossypii ADR114Cp (ADR114C), mRNA 42 1.5
17gb|AC122486.4| Mus musculus BAC clone RP24-380B9 from 12, comple... 42 1.5
18dbj|AP006418.1| Lotus japonicus genomic DNA, chromosome 6, clone... 42 1.5
19gb|AC153501.2| Mus musculus 10 BAC RP23-79J15 (Roswell Park Canc... 40 5.9
20ref|XM_642371.1| Dictyostelium discoideum hypothetical protein (... 40 5.9
21ref|NM_196662.1| Oryza sativa (japonica cultivar-group) contains... 40 5.9
22ref|NM_193891.1| Oryza sativa (japonica cultivar-group), predic... 40 5.9
23ref|NM_189357.1| Oryza sativa (japonica cultivar-group), predic... 40 5.9
24gb|AC087546.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
25gb|AC118285.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
26gb|AY641547.1| Halomonas maura nitrate-reductase operon, complet... 40 5.9
27gb|AC104278.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
28ref|XM_755863.1| Ustilago maydis 521 hypothetical protein (UM048... 40 5.9
29gb|AC121858.3| Mus musculus BAC clone RP24-104B23 from chromosom... 40 5.9
30ref|XM_380438.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 5.9
31ref|XM_858301.1| PREDICTED: Canis familiaris similar to Retinobl... 40 5.9
32ref|XM_535303.2| PREDICTED: Canis familiaris similar to Retinobl... 40 5.9
33ref|XM_506093.1| Yarrowia lipolytica CLIB122, YALI0F31383g predi... 40 5.9
34ref|XM_785070.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 5.9
35emb|BX011524.1|CNS08H20 Single read from an extremity of a full-... 40 5.9
36emb|BX927148.1| Corynebacterium glutamicum ATCC 13032, IS finger... 40 5.9
37dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
38dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
39dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
40dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
41dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, compl... 40 5.9
42dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
43dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
44ref|XM_222159.3| PREDICTED: Rattus norvegicus zinc finger, CCHC ... 40 5.9
45dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 40 5.9
46dbj|AP003630.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
47dbj|AP002968.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
48dbj|AK105946.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
49emb|AL590988.11| Mouse DNA sequence from clone RP23-46C18 on chr... 40 5.9
50gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
51emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 40 5.9 
>gb|AY532594.1| Triticum aestivum minichromosomal maintenance factor (MCM2) mRNA,
           complete cds
          Length = 2923

 Score =  650 bits (328), Expect = 0.0
 Identities = 374/388 (96%), Gaps = 1/388 (0%)
 Strand = Plus / Plus

                                                                       
Query: 49  cacgcctcctccacaggacccttctcggagcccgcggatggacgactcggagaacaacgc 108
           ||||| |||||||||||| ||| ||| || ||||||||||||||||||||||||||||||
Sbjct: 4   cacgcgtcctccacaggagcctcctccga-cccgcggatggacgactcggagaacaacgc 62

                                                                       
Query: 109 gccgtcgaccccgggctcgccgggtttcagcaccgaccggctgccgcccaacaccaccac 168
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 63  gccgtcgaccccgggctcgccgggcttcagcaccgaccggctgccgcccaacaccaccac 122

                                                                       
Query: 169 cagtcgcggcgccaccgacccgtcctcctactcggacgacgatggcgaggcggaggtcga 228
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 cagccgcggcgccaccgacccgtcctcctactcggacgacgatggcgaggcggaggtcga 182

                                                                       
Query: 229 ccccaatgtgctccccgaggacgacggcgccaccgttatccgcgacgaggaggaagacga 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 ccccaatgtgctccccgaggacgacggcgccaccgttatccgcgacgaggaggaagacga 242

                                                                       
Query: 289 cggggaagacctcttcaacgacgactacctcaatgattaccggagaatggatgagcagga 348
            ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 243 tggggaggacctcttcaacgacgactacctcaatgattaccgaagaatggatgagcagga 302

                                                                       
Query: 349 tcactatgagtccgttgggttagatgactccatagaggatgagaggaacctggatgagat 408
           ||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 303 tcagtatgagtcggttgggttagacgactcgatagaggatgagaggaacctggatgagat 362

                                       
Query: 409 catggctgatcgaagggctgcagaagcg 436
           ||||||||||||||||||||||||||||
Sbjct: 363 catggctgatcgaagggctgcagaagcg 390
to top
>gb|AY532593.1| Triticum aestivum minichromosomal maintenance factor (MCM2) gene,
            exons 1 through 18 and complete sequence
          Length = 8809

 Score =  432 bits (218), Expect = e-118
 Identities = 230/234 (98%)
 Strand = Plus / Plus

                                                                        
Query: 88   ggacgactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccg 147
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2395 ggacgactcggagaacaacgcgccgtcgaccccgggctcgccgggcttcagcaccgaccg 2454

                                                                        
Query: 148  gctgccgcccaacaccaccaccagtcgcggcgccaccgacccgtcctcctactcggacga 207
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2455 gctgccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacga 2514

                                                                        
Query: 208  cgatggcgaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttat 267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2515 cgatggcgaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttat 2574

                                                                  
Query: 268  ccgcgacgaggaggaagacgacggggaagacctcttcaacgacgactacctcaa 321
            ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 2575 ccgcgacgaggaggaagacgatggggaggacctcttcaacgacgactacctcaa 2628



 Score =  182 bits (92), Expect = 6e-43
 Identities = 107/112 (95%)
 Strand = Plus / Plus

                                                                        
Query: 325  ttaccggagaatggatgagcaggatcactatgagtccgttgggttagatgactccataga 384
            |||||| |||||||||||||||||||| |||||||| ||||||||||| ||||| |||||
Sbjct: 3388 ttaccgaagaatggatgagcaggatcagtatgagtcggttgggttagacgactcgataga 3447

                                                                
Query: 385  ggatgagaggaacctggatgagatcatggctgatcgaagggctgcagaagcg 436
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3448 ggatgagaggaacctggatgagatcatggctgatcgaagggctgcagaagcg 3499



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Plus

                                                                        
Query: 6    attccccccttcccgccgaaaccctagcctcatctcgccaccgcacgcctcctccacagg 65
            |||||||||||||||||||||||||||||||  | | |  || ||||| |||||||||||
Sbjct: 2199 attccccccttcccgccgaaaccctagcctcggcgcacagccacacgcgtcctccacagg 2258

                                    
Query: 66   acccttctcggagcccgcggatgg 89
            | ||| ||| || |||||||||||
Sbjct: 2259 agcctcctccgaccccgcggatgg 2282
to top
>dbj|AK121422.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133N01, full
           insert sequence
          Length = 3214

 Score =  232 bits (117), Expect = 8e-58
 Identities = 196/221 (88%), Gaps = 6/221 (2%)
 Strand = Plus / Plus

                                                                       
Query: 215 gaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttatccgcgac 274
           |||||||||||||||||||| |||||||||||||||||||||| |  ||    ||||  |
Sbjct: 234 gaggcggaggtcgaccccaacgtgctccccgaggacgacggcgtcgtcg----ccgc--c 287

                                                                       
Query: 275 gaggaggaagacgacggggaagacctcttcaacgacgactacctcaatgattaccggaga 334
           |||||||| || |||||||| ||||||||||||||| |||||||| ||||||||||||| 
Sbjct: 288 gaggaggaggaggacggggaggacctcttcaacgacaactacctcgatgattaccggagg 347

                                                                       
Query: 335 atggatgagcaggatcactatgagtccgttgggttagatgactccatagaggatgagagg 394
           |||||||||||||| || ||||| || ||||||||||||||||| ||||||||||| |||
Sbjct: 348 atggatgagcaggaccagtatgaatcggttgggttagatgactcgatagaggatgaaagg 407

                                                    
Query: 395 aacctggatgagatcatggctgatcgaagggctgcagaagc 435
           |||||||||||||||||||| ||| |||||||||| |||||
Sbjct: 408 aacctggatgagatcatggcagatagaagggctgctgaagc 448



 Score =  186 bits (94), Expect = 4e-44
 Identities = 118/126 (93%)
 Strand = Plus / Plus

                                                                       
Query: 85  gatggacgactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccga 144
           |||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||
Sbjct: 83  gatggatgactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacaga 142

                                                                       
Query: 145 ccggctgccgcccaacaccaccaccagtcgcggcgccaccgacccgtcctcctactcgga 204
           | |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 143 caggctgccgccgaacaccaccaccagccgcggcgccaccgacccgtcctcctactcgga 202

                 
Query: 205 cgacga 210
           ||||||
Sbjct: 203 cgacga 208
to top
>gb|AC131343.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0057E15, complete sequence
          Length = 149035

 Score =  180 bits (91), Expect = 3e-42
 Identities = 112/119 (94%)
 Strand = Plus / Plus

                                                                         
Query: 92    gactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccggctg 151
             |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| |||||
Sbjct: 97266 gactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacagacaggctg 97325

                                                                        
Query: 152   ccgcccaacaccaccaccagtcgcggcgccaccgacccgtcctcctactcggacgacga 210
             ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 97326 ccgccgaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 97384



 Score =  147 bits (74), Expect = 3e-32
 Identities = 104/114 (91%)
 Strand = Plus / Plus

                                                                         
Query: 322   tgattaccggagaatggatgagcaggatcactatgagtccgttgggttagatgactccat 381
             |||||||||||| |||||||||||||| || ||||| || ||||||||||||||||| ||
Sbjct: 98224 tgattaccggaggatggatgagcaggaccagtatgaatcggttgggttagatgactcgat 98283

                                                                   
Query: 382   agaggatgagaggaacctggatgagatcatggctgatcgaagggctgcagaagc 435
             ||||||||| ||||||||||||||||||||||| ||| |||||||||| |||||
Sbjct: 98284 agaggatgaaaggaacctggatgagatcatggcagatagaagggctgctgaagc 98337



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 91/105 (86%), Gaps = 6/105 (5%)
 Strand = Plus / Plus

                                                                         
Query: 215   gaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttatccgcgac 274
             |||||||||||||||||||| |||||||||||||||||||||| |  ||    ||||  |
Sbjct: 97410 gaggcggaggtcgaccccaacgtgctccccgaggacgacggcgtcgtcg----ccgc--c 97463

                                                          
Query: 275   gaggaggaagacgacggggaagacctcttcaacgacgactacctc 319
             |||||||| || |||||||| ||||||||||||||| ||||||||
Sbjct: 97464 gaggaggaggaggacggggaggacctcttcaacgacaactacctc 97508
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  180 bits (91), Expect = 3e-42
 Identities = 112/119 (94%)
 Strand = Plus / Plus

                                                                            
Query: 92       gactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccggctg 151
                |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| |||||
Sbjct: 16456667 gactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacagacaggctg 16456726

                                                                           
Query: 152      ccgcccaacaccaccaccagtcgcggcgccaccgacccgtcctcctactcggacgacga 210
                ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 16456727 ccgccgaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 16456785



 Score =  147 bits (74), Expect = 3e-32
 Identities = 104/114 (91%)
 Strand = Plus / Plus

                                                                            
Query: 322      tgattaccggagaatggatgagcaggatcactatgagtccgttgggttagatgactccat 381
                |||||||||||| |||||||||||||| || ||||| || ||||||||||||||||| ||
Sbjct: 16457625 tgattaccggaggatggatgagcaggaccagtatgaatcggttgggttagatgactcgat 16457684

                                                                      
Query: 382      agaggatgagaggaacctggatgagatcatggctgatcgaagggctgcagaagc 435
                ||||||||| ||||||||||||||||||||||| ||| |||||||||| |||||
Sbjct: 16457685 agaggatgaaaggaacctggatgagatcatggcagatagaagggctgctgaagc 16457738



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 91/105 (86%), Gaps = 6/105 (5%)
 Strand = Plus / Plus

                                                                            
Query: 215      gaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttatccgcgac 274
                |||||||||||||||||||| |||||||||||||||||||||| |  ||    ||||  |
Sbjct: 16456811 gaggcggaggtcgaccccaacgtgctccccgaggacgacggcgtcgtcg----ccgc--c 16456864

                                                             
Query: 275      gaggaggaagacgacggggaagacctcttcaacgacgactacctc 319
                |||||||| || |||||||| ||||||||||||||| ||||||||
Sbjct: 16456865 gaggaggaggaggacggggaggacctcttcaacgacaactacctc 16456909
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  180 bits (91), Expect = 3e-42
 Identities = 112/119 (94%)
 Strand = Plus / Plus

                                                                            
Query: 92       gactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccggctg 151
                |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| |||||
Sbjct: 16547671 gactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacagacaggctg 16547730

                                                                           
Query: 152      ccgcccaacaccaccaccagtcgcggcgccaccgacccgtcctcctactcggacgacga 210
                ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 16547731 ccgccgaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 16547789



 Score =  147 bits (74), Expect = 3e-32
 Identities = 104/114 (91%)
 Strand = Plus / Plus

                                                                            
Query: 322      tgattaccggagaatggatgagcaggatcactatgagtccgttgggttagatgactccat 381
                |||||||||||| |||||||||||||| || ||||| || ||||||||||||||||| ||
Sbjct: 16548629 tgattaccggaggatggatgagcaggaccagtatgaatcggttgggttagatgactcgat 16548688

                                                                      
Query: 382      agaggatgagaggaacctggatgagatcatggctgatcgaagggctgcagaagc 435
                ||||||||| ||||||||||||||||||||||| ||| |||||||||| |||||
Sbjct: 16548689 agaggatgaaaggaacctggatgagatcatggcagatagaagggctgctgaagc 16548742



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 91/105 (86%), Gaps = 6/105 (5%)
 Strand = Plus / Plus

                                                                            
Query: 215      gaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttatccgcgac 274
                |||||||||||||||||||| |||||||||||||||||||||| |  ||    ||||  |
Sbjct: 16547815 gaggcggaggtcgaccccaacgtgctccccgaggacgacggcgtcgtcg----ccgc--c 16547868

                                                             
Query: 275      gaggaggaagacgacggggaagacctcttcaacgacgactacctc 319
                |||||||| || |||||||| ||||||||||||||| ||||||||
Sbjct: 16547869 gaggaggaggaggacggggaggacctcttcaacgacaactacctc 16547913
to top
>gb|AY111848.1| Zea mays CL12933_1 mRNA sequence
          Length = 632

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 407 atcatggctgatcgaagggctgcagaagcg 436
           |||||||||||||||||||| || ||||||
Sbjct: 27  atcatggctgatcgaagggccgcggaagcg 56
to top
>ref|XM_883457.1| Leishmania major strain Friedlin hypothetical protein (P1105.02)
           partial mRNA
          Length = 507

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 198 actcggacgacgatggcgagg 218
           |||||||||||||||||||||
Sbjct: 479 actcggacgacgatggcgagg 499
to top
>emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4, right end
          Length = 247462

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 198   actcggacgacgatggcgagg 218
             |||||||||||||||||||||
Sbjct: 28850 actcggacgacgatggcgagg 28830
to top
>gb|AY861166.1| Cottus gobio microsatellite Cott105 sequence
          Length = 711

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 270 gcgacgaggaggaagacgacggggaagac 298
           ||||||||||||||||||| | |||||||
Sbjct: 297 gcgacgaggaggaagacgaggaggaagac 269
to top
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 205     cgacgatggcgaggcggaggt 225
               |||||||||||||||||||||
Sbjct: 1468047 cgacgatggcgaggcggaggt 1468027
to top
>gb|AC090097.5| Homo sapiens chromosome 8, clone RP11-369C6, complete sequence
          Length = 170973

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 383   gaggatgagaggaacctggat 403
             |||||||||||||||||||||
Sbjct: 91539 gaggatgagaggaacctggat 91519
to top
>gb|AC092472.3| Homo sapiens chromosome 8 clone RP1-96P7 map map 8p21-p11, complete
              sequence
          Length = 167794

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 383    gaggatgagaggaacctggat 403
              |||||||||||||||||||||
Sbjct: 146103 gaggatgagaggaacctggat 146083
to top
>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV,
              complete sequence
          Length = 1466886

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 275    gaggaggaagacgacggggaa 295
              |||||||||||||||||||||
Sbjct: 909354 gaggaggaagacgacggggaa 909334
to top
>gb|AC008863.8| Homo sapiens chromosome 5 clone CTD-2192G22, complete sequence
          Length = 152529

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 383    gaggatgagaggaacctggat 403
              |||||||||||||||||||||
Sbjct: 114816 gaggatgagaggaacctggat 114796
to top
>ref|NM_209563.1| Eremothecium gossypii ADR114Cp (ADR114C), mRNA
          Length = 2085

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 275 gaggaggaagacgacggggaa 295
           |||||||||||||||||||||
Sbjct: 154 gaggaggaagacgacggggaa 174
to top
>gb|AC122486.4| Mus musculus BAC clone RP24-380B9 from 12, complete sequence
          Length = 128253

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 335    atggatgagcaggatcactat 355
              |||||||||||||||||||||
Sbjct: 108319 atggatgagcaggatcactat 108339
to top
>dbj|AP006418.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT23A02, TM0306,
             complete sequence
          Length = 62713

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 13    ccttcccgccgaaaccctagcctca 37
             |||||||| ||||||||||||||||
Sbjct: 47783 ccttcccgtcgaaaccctagcctca 47807
to top
>gb|AC153501.2| Mus musculus 10 BAC RP23-79J15 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 251631

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 372   atgactccatagaggatgag 391
             ||||||||||||||||||||
Sbjct: 52421 atgactccatagaggatgag 52440
to top
>ref|XM_642371.1| Dictyostelium discoideum hypothetical protein (DDB0189692), partial
           mRNA
          Length = 1278

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 155 cccaacaccaccaccagtcg 174
           ||||||||||||||||||||
Sbjct: 546 cccaacaccaccaccagtcg 565
to top
>ref|NM_196662.1| Oryza sativa (japonica cultivar-group) contains similarity to
           gypsy-type retrotransposon (OSJNBa0012D19.23), mRNA
          Length = 1998

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 275 gaggaggaagacgacgggga 294
           ||||||||||||||||||||
Sbjct: 868 gaggaggaagacgacgggga 887
to top
>ref|NM_193891.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 960

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 271 cgacgaggaggaagacgacg 290
           ||||||||||||||||||||
Sbjct: 636 cgacgaggaggaagacgacg 655
to top
>ref|NM_189357.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1632

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 178 cgccaccgacccgtcctcct 197
           ||||||||||||||||||||
Sbjct: 843 cgccaccgacccgtcctcct 824
to top
>gb|AC087546.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0012D19,
              complete sequence
          Length = 153276

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 275    gaggaggaagacgacgggga 294
              ||||||||||||||||||||
Sbjct: 121853 gaggaggaagacgacgggga 121872
to top
>gb|AC118285.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1206_C08,
              complete sequence
          Length = 115026

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 271    cgacgaggaggaagacgacg 290
              ||||||||||||||||||||
Sbjct: 107836 cgacgaggaggaagacgacg 107817
to top
>gb|AY641547.1| Halomonas maura nitrate-reductase operon, complete sequence
          Length = 8823

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 244  cgaggacgacggcgccaccg 263
            ||||||||||||||||||||
Sbjct: 3486 cgaggacgacggcgccaccg 3505
to top
>gb|AC104278.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1345_B12,
             complete sequence
          Length = 119909

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 271   cgacgaggaggaagacgacg 290
             ||||||||||||||||||||
Sbjct: 22028 cgacgaggaggaagacgacg 22009
to top
>ref|XM_755863.1| Ustilago maydis 521 hypothetical protein (UM04809.1) partial mRNA
          Length = 1827

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 271 cgacgaggaggaagacgacggggaagac 298
           |||||| ||||||||||||| |||||||
Sbjct: 864 cgacgacgaggaagacgacgaggaagac 891
to top
>gb|AC121858.3| Mus musculus BAC clone RP24-104B23 from chromosome 8, complete sequence
          Length = 177226

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    ctcctccacaggacccttct 73
             ||||||||||||||||||||
Sbjct: 72162 ctcctccacaggacccttct 72181
to top
>ref|XM_380438.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00262.1)
           partial mRNA
          Length = 1035

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 271 cgacgaggaggaagacgacg 290
           ||||||||||||||||||||
Sbjct: 402 cgacgaggaggaagacgacg 421
to top
>ref|XM_858301.1| PREDICTED: Canis familiaris similar to Retinoblastoma-like protein
           2 (130 kDa retinoblastoma-associated protein) (PRB2)
           (P130) (RBR-2), transcript variant 3 (LOC478127), mRNA
          Length = 2389

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 275 gaggaggaagacgacgggga 294
           ||||||||||||||||||||
Sbjct: 153 gaggaggaagacgacgggga 172
to top
>ref|XM_535303.2| PREDICTED: Canis familiaris similar to Retinoblastoma-like protein
           2 (130 kDa retinoblastoma-associated protein) (PRB2)
           (P130) (RBR-2), transcript variant 1 (LOC478127), mRNA
          Length = 4080

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 275 gaggaggaagacgacgggga 294
           ||||||||||||||||||||
Sbjct: 153 gaggaggaagacgacgggga 172
to top
>ref|XM_506093.1| Yarrowia lipolytica CLIB122, YALI0F31383g predicted mRNA
          Length = 1260

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 275  gaggaggaagacgacggggaagac 298
            |||||||||||||||| |||||||
Sbjct: 1108 gaggaggaagacgacgaggaagac 1131
to top
>ref|XM_785070.1| PREDICTED: Strongylocentrotus purpuratus similar to Hypothetical
            UPF0120 protein DKFZp564C186 homolog (LOC585237), mRNA
          Length = 2835

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 283  agacgacggggaagacctcttcaa 306
            |||||||| |||||||||||||||
Sbjct: 2055 agacgacgaggaagacctcttcaa 2078
to top
>emb|BX011524.1|CNS08H20 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA18BG03 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 927

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 271 cgacgaggaggaagacgacggggaagac 298
           ||||||||||| | ||||||||||||||
Sbjct: 795 cgacgaggagggaaacgacggggaagac 768
to top
>emb|BX927148.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 1/10
          Length = 348071

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 171    gtcgcggcgccaccgacccg 190
              ||||||||||||||||||||
Sbjct: 143376 gtcgcggcgccaccgacccg 143395
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 275      gaggaggaagacgacgggga 294
                ||||||||||||||||||||
Sbjct: 15063234 gaggaggaagacgacgggga 15063253
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 271      cgacgaggaggaagacgacg 290
                ||||||||||||||||||||
Sbjct: 22276608 cgacgaggaggaagacgacg 22276589
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 271      cgacgaggaggaagacgacg 290
                ||||||||||||||||||||
Sbjct: 26869596 cgacgaggaggaagacgacg 26869577
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 178      cgccaccgacccgtcctcct 197
                ||||||||||||||||||||
Sbjct: 42357219 cgccaccgacccgtcctcct 42357238



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 271      cgacgaggaggaagacgacg 290
                ||||||||||||||||||||
Sbjct: 15675773 cgacgaggaggaagacgacg 15675792
to top
>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 171    gtcgcggcgccaccgacccg 190
              ||||||||||||||||||||
Sbjct: 143375 gtcgcggcgccaccgacccg 143394
to top
>dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0401G10
          Length = 160704

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    cgccaccgacccgtcctcct 197
              ||||||||||||||||||||
Sbjct: 129176 cgccaccgacccgtcctcct 129195
to top
>dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0483G10
          Length = 190721

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   cgccaccgacccgtcctcct 197
             ||||||||||||||||||||
Sbjct: 16557 cgccaccgacccgtcctcct 16576
to top
>ref|XM_222159.3| PREDICTED: Rattus norvegicus zinc finger, CCHC domain containing 8
           (predicted) (Zcchc8_predicted), mRNA
          Length = 2675

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 271 cgacgaggaggaagacgacg 290
           ||||||||||||||||||||
Sbjct: 162 cgacgaggaggaagacgacg 181
to top
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 80      ccgcggatggacgactcgga 99
               ||||||||||||||||||||
Sbjct: 2043809 ccgcggatggacgactcgga 2043828
to top
>dbj|AP003630.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0566A10
          Length = 174367

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 271   cgacgaggaggaagacgacg 290
             ||||||||||||||||||||
Sbjct: 55031 cgacgaggaggaagacgacg 55012
to top
>dbj|AP002968.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0416G11
          Length = 138858

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 271    cgacgaggaggaagacgacg 290
              ||||||||||||||||||||
Sbjct: 113670 cgacgaggaggaagacgacg 113689
to top
>dbj|AK105946.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C05, full
           insert sequence
          Length = 1367

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 271 cgacgaggaggaagacgacg 290
           ||||||||||||||||||||
Sbjct: 978 cgacgaggaggaagacgacg 997
to top
>emb|AL590988.11| Mouse DNA sequence from clone RP23-46C18 on chromosome 8, complete
              sequence
          Length = 183975

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     ctcctccacaggacccttct 73
              ||||||||||||||||||||
Sbjct: 181578 ctcctccacaggacccttct 181597
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 275      gaggaggaagacgacgggga 294
                ||||||||||||||||||||
Sbjct: 15071475 gaggaggaagacgacgggga 15071494
to top
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 275     gaggaggaagacgacggggaagac 298
               |||||||||||||||| |||||||
Sbjct: 3903697 gaggaggaagacgacgaggaagac 3903674


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,119,458
Number of Sequences: 3902068
Number of extensions: 3119458
Number of successful extensions: 69615
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68956
Number of HSP's gapped (non-prelim): 658
length of query: 436
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 414
effective length of database: 17,147,199,772
effective search space: 7098940705608
effective search space used: 7098940705608
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top