>emb|X88779.1|ZMGLOSSY Z.mays Glossy2 locus DNA
          Length = 6343

 Score =  149 bits (75), Expect = 5e-33
 Identities = 111/123 (90%)
 Strand = Plus / Plus

                                                                        
Query: 108  gcggtgcacgggcaccggctgtcgacggtggtgccgagctcggtgacggaggtggagggg 167
            |||||||||||||||||||| || ||||||||||||||||||||||||| || || ||  
Sbjct: 2194 gcggtgcacgggcaccggctctccacggtggtgccgagctcggtgacgggggaggtggac 2253

                                                                        
Query: 168  tacgagctgggggacgcggacctggcgttccggctgcactacctgcgcggggtgtactac 227
            |||| ||||| ||||||||||||||| |||  ||||||||||||||||||||||||||||
Sbjct: 2254 tacgcgctggcggacgcggacctggccttcaagctgcactacctgcgcggggtgtactac 2313

               
Query: 228  tac 230
            |||
Sbjct: 2314 tac 2316

>gb|AY109951.1| Zea mays CL2305_1 mRNA sequence
          Length = 1707

 Score =  111 bits (56), Expect = 1e-21
 Identities = 99/115 (86%)
 Strand = Plus / Plus

                                                                       
Query: 116 cgggcaccggctgtcgacggtggtgccgagctcggtgacggaggtggaggggtacgagct 175
           |||||||||||| || |||||||||||||||||||||||      || ||  |||| |||
Sbjct: 224 cgggcaccggctctccacggtggtgccgagctcggtgacnnnnnaggtggactacgcgct 283

                                                                  
Query: 176 gggggacgcggacctggcgttccggctgcactacctgcgcggggtgtactactac 230
           || ||||||||||||||| |||  |||||||||||||||||||||||||||||||
Sbjct: 284 ggcggacgcggacctggccttcaagctgcactacctgcgcggggtgtactactac 338

>ref|XM_473854.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1314

 Score = 99.6 bits (50), Expect = 4e-18
 Identities = 53/54 (98%)
 Strand = Plus / Plus

                                                                 
Query: 103 cggcggcggtgcacgggcaccggctgtcgacggtggtgccgagctcggtgacgg 156
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 32  cggcggcggtgcacgggcaccggctgtctacggtggtgccgagctcggtgacgg 85

>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17,
             complete sequence
          Length = 160484

 Score = 99.6 bits (50), Expect = 4e-18
 Identities = 53/54 (98%)
 Strand = Plus / Plus

                                                                   
Query: 103   cggcggcggtgcacgggcaccggctgtcgacggtggtgccgagctcggtgacgg 156
             |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 11417 cggcggcggtgcacgggcaccggctgtctacggtggtgccgagctcggtgacgg 11470

>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10,
              complete sequence
          Length = 150551

 Score = 99.6 bits (50), Expect = 4e-18
 Identities = 53/54 (98%)
 Strand = Plus / Plus

                                                                    
Query: 103    cggcggcggtgcacgggcaccggctgtcgacggtggtgccgagctcggtgacgg 156
              |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 126710 cggcggcggtgcacgggcaccggctgtctacggtggtgccgagctcggtgacgg 126763

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 99.6 bits (50), Expect = 4e-18
 Identities = 53/54 (98%)
 Strand = Plus / Plus

                                                                      
Query: 103      cggcggcggtgcacgggcaccggctgtcgacggtggtgccgagctcggtgacgg 156
                |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 31029337 cggcggcggtgcacgggcaccggctgtctacggtggtgccgagctcggtgacgg 31029390

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/44 (93%), Gaps = 2/44 (4%)
 Strand = Plus / Plus

                                                            
Query: 115      acgggcaccggctgtcgacggtg--gtgccgagctcggtgacgg 156
                |||||||| ||||||||||||||  |||||||||||||||||||
Sbjct: 24096055 acgggcacgggctgtcgacggtggtgtgccgagctcggtgacgg 24096098

>dbj|AP002844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0410E03
          Length = 164839

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/44 (93%), Gaps = 2/44 (4%)
 Strand = Plus / Plus

                                                         
Query: 115   acgggcaccggctgtcgacggtg--gtgccgagctcggtgacgg 156
             |||||||| ||||||||||||||  |||||||||||||||||||
Sbjct: 71877 acgggcacgggctgtcgacggtggtgtgccgagctcggtgacgg 71920

>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 68     cggcgcggtcggcatggggctcga 91
              ||||||||||||||||||||||||
Sbjct: 952111 cggcgcggtcggcatggggctcga 952134

>gb|DQ267496.1| Uncultured delta proteobacterium DeepAnt-32C6 fosmid, complete sequence
          Length = 36589

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 211   tgcgcggggtgtactactactcggccggg 239
             ||||||||||||||||  |||||||||||
Sbjct: 12120 tgcgcggggtgtactataactcggccggg 12092

>ref|XM_425882.1| PREDICTED: Gallus gallus similar to glutamate transporter 5B
           (LOC428322), mRNA
          Length = 2154

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 226 actactcggccgggaaggtggtgc 249
           |||||||||| |||||||||||||
Sbjct: 371 actactcggcagggaaggtggtgc 394

>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 245     ggtgcgcggggtgaccacca 264
               ||||||||||||||||||||
Sbjct: 2665968 ggtgcgcggggtgaccacca 2665987

>emb|BX572602.1| Rhodopseudomonas palustris CGA009 complete genome; segment 10/16
          Length = 349981

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 65     gcgcggcgcggtcggcatggggct 88
              |||| |||||||||||||||||||
Sbjct: 279703 gcgccgcgcggtcggcatggggct 279680

>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 75      gtcggcatggggctcgaggg 94
               ||||||||||||||||||||
Sbjct: 1144588 gtcggcatggggctcgaggg 1144607

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 103     cggcggcggtgcacgggcaccggc 126
               ||||||||| ||||||||||||||
Sbjct: 7979381 cggcggcggcgcacgggcaccggc 7979358

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 99       gcgacggcggcggtgcacgg 118
                ||||||||||||||||||||
Sbjct: 17956681 gcgacggcggcggtgcacgg 17956700

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 119     gcaccggctgtcgacggtgg 138
               ||||||||||||||||||||
Sbjct: 3423653 gcaccggctgtcgacggtgg 3423672

>dbj|AP004348.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0683C09
          Length = 185139

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 99     gcgacggcggcggtgcacgg 118
              ||||||||||||||||||||
Sbjct: 183673 gcgacggcggcggtgcacgg 183692

>dbj|AP005515.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0064M11
          Length = 164263

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    gcgacggcggcggtgcacgg 118
             ||||||||||||||||||||
Sbjct: 34840 gcgacggcggcggtgcacgg 34859

>gb|M32613.1|KPNPULL K.pneumoniae pullulanase secretion operon genes pulC, pulD, pulE,
            pulF, pulG, pulH, pulI, pulJ, pulK, pulL, pulM, pulN, and
            pulO, complete cds
          Length = 13246

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 125  gctgtcgacggtggtgccga 144
            ||||||||||||||||||||
Sbjct: 5228 gctgtcgacggtggtgccga 5247

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 103     cggcggcggtgcacgggcaccggc 126
               ||||||||| ||||||||||||||
Sbjct: 7979262 cggcggcggcgcacgggcaccggc 7979239

>emb|AL831810.4|CNS08CAN Oryza sativa chromosome 12, . BAC OSJNBa0077B14 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 153111

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 103   cggcggcggtgcacgggcaccggc 126
             ||||||||| ||||||||||||||
Sbjct: 20789 cggcggcggcgcacgggcaccggc 20812


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,616,661
Number of Sequences: 3902068
Number of extensions: 1616661
Number of successful extensions: 30215
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29746
Number of HSP's gapped (non-prelim): 467
length of query: 271
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 249
effective length of database: 17,147,199,772
effective search space: 4269652743228
effective search space used: 4269652743228
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)