>DDB1A_ARATH (Q9M0V3) DNA damage binding protein 1a (UV-damaged DNA-binding|
           protein 1a) (DDB1a)
          Length = 1088

 Score =  227 bits (579), Expect = 8e-60
 Identities = 106/117 (90%), Positives = 112/117 (95%)
 Frame = +3

Query: 81  MSTWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 260
           MS+WNYVVTAHKPTSV+HSCVGNFT P +LNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG
Sbjct: 1   MSSWNYVVTAHKPTSVTHSCVGNFTSPQELNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 60

Query: 261 RIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDRIGRPTDN 431
           RIAT+ELFRPH EAQDFLFIATERYKFCVLQWD E SEL+TR+MGDVSDRIGRPTDN
Sbjct: 61  RIATLELFRPHGEAQDFLFIATERYKFCVLQWDPESSELITRAMGDVSDRIGRPTDN 117

>DDB1_LYCES (Q6QNU4) DNA damage binding protein 1 (UV-damaged DNA-binding|
           protein 1) (High pigmentation protein 1)
          Length = 1090

 Score =  223 bits (567), Expect = 2e-58
 Identities = 102/117 (87%), Positives = 110/117 (94%)
 Frame = +3

Query: 81  MSTWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 260
           MS WNYVVTAHKPT+V+HSCVGNFTGP +LNLI+AKCTRIEIHLLTPQGLQPMLDVPIYG
Sbjct: 1   MSVWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYG 60

Query: 261 RIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDRIGRPTDN 431
           RIAT+ELFRPH E QD LFIATERYKFCVLQWD E SE++TR+MGDVSDRIGRPTDN
Sbjct: 61  RIATLELFRPHGETQDLLFIATERYKFCVLQWDTEASEVITRAMGDVSDRIGRPTDN 117

>DDB1_LYCCS (Q6E7D1) DNA damage binding protein 1 (UV-damaged DNA-binding|
           protein 1)
          Length = 1095

 Score =  216 bits (551), Expect = 1e-56
 Identities = 102/122 (83%), Positives = 110/122 (90%), Gaps = 5/122 (4%)
 Frame = +3

Query: 81  MSTWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQ-----PMLD 245
           MS WNYVVTAHKPT+V+HSCVGNFTGP +LNLI+AKCTRIEIHLLTPQGLQ     PMLD
Sbjct: 1   MSVWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEIHLLTPQGLQCICLQPMLD 60

Query: 246 VPIYGRIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDRIGRPT 425
           VPIYGRIAT+ELFRPH E QD LFIATERYKFCVLQWD E SE++TR+MGDVSDRIGRPT
Sbjct: 61  VPIYGRIATLELFRPHGETQDLLFIATERYKFCVLQWDTEASEVITRAMGDVSDRIGRPT 120

Query: 426 DN 431
           DN
Sbjct: 121 DN 122

>DDB1B_ARATH (O49552) DNA damage binding protein 1b (UV-damaged DNA-binding|
           protein 1b) (DDB1b)
          Length = 1088

 Score =  208 bits (530), Expect = 4e-54
 Identities = 97/117 (82%), Positives = 106/117 (90%)
 Frame = +3

Query: 81  MSTWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 260
           MS WNY VTA KPT V+HSCVGNFT P +LNLIVAK TRIEIHLL+PQGLQ +LDVP+YG
Sbjct: 1   MSVWNYAVTAQKPTCVTHSCVGNFTSPQELNLIVAKSTRIEIHLLSPQGLQTILDVPLYG 60

Query: 261 RIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDRIGRPTDN 431
           RIAT+ELFRPH EAQDFLF+ATERYKFCVLQWD E SEL+TR+MGDVSDRIGRPTDN
Sbjct: 61  RIATMELFRPHGEAQDFLFVATERYKFCVLQWDYESSELITRAMGDVSDRIGRPTDN 117

>DDB1_HUMAN (Q16531) DNA damage-binding protein 1 (Damage-specific DNA-binding|
           protein 1) (UV-damaged DNA-binding factor) (DDB p127
           subunit) (DDBa) (UV-damaged DNA-binding protein 1)
           (UV-DDB 1) (Xeroderma pigmentosum group E-complementing
           protein) (XPCe)
          Length = 1140

 Score =  122 bits (306), Expect = 4e-28
 Identities = 56/116 (48%), Positives = 87/116 (75%), Gaps = 2/116 (1%)
 Frame = +3

Query: 87  TWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYGRI 266
           ++NYVVTA KPT+V+    G+FT    LNL++AK TR+EI+++T +GL+P+ +V +YG+I
Sbjct: 2   SYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKI 61

Query: 267 ATIELFRPHNEAQDFLFIATERYKFCVLQW--DAEKSELLTRSMGDVSDRIGRPTD 428
           A +ELFRP  E++D LFI T +Y  C+L++    E  +++TR+ G+V DRIGRP++
Sbjct: 62  AVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSE 117

>DDB1_CERAE (P33194) DNA damage-binding protein 1 (Damage-specific DNA-binding|
           protein 1) (DDB p127 subunit) (DDBa) (UV-damaged
           DNA-binding protein 1) (UV-DDB 1)
          Length = 1140

 Score =  120 bits (300), Expect = 2e-27
 Identities = 55/116 (47%), Positives = 86/116 (74%), Gaps = 2/116 (1%)
 Frame = +3

Query: 87  TWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYGRI 266
           ++NYVVTA KPT+V+     +FT    LNL++AK TR+EI+++T +GL+P+ +V +YG+I
Sbjct: 2   SYNYVVTAQKPTAVNGCVTAHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKI 61

Query: 267 ATIELFRPHNEAQDFLFIATERYKFCVLQW--DAEKSELLTRSMGDVSDRIGRPTD 428
           A +ELFRP  E++D LFI T +Y  C+L++    E  +++TR+ G+V DRIGRP++
Sbjct: 62  AVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSE 117

>DDB1_SCHPO (O13807) DNA damage-binding protein 1 (Damage-specific DNA-binding|
           protein 1)
          Length = 1072

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 25/89 (28%), Positives = 46/89 (51%)
 Frame = +3

Query: 96  YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYGRIATI 275
           YV   HKP+S+ ++    F      N+IVAK   +E++      L  +    I+ +I  +
Sbjct: 3   YVTYLHKPSSIRNAVFCKFVNASSWNVIVAKVNCLEVYSYENNRLCLITSANIFAKIVNV 62

Query: 276 ELFRPHNEAQDFLFIATERYKFCVLQWDA 362
           + F+P +   D + +AT+ +++  L WDA
Sbjct: 63  KAFKPVSSPTDHIIVATDSFRYFTLFWDA 91

>RSE1_ASPFU (Q4WLI5) Pre-mRNA-splicing factor rse1|
          Length = 1225

 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 21/89 (23%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
 Frame = +3

Query: 96  YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTP-QG-LQPMLDVPIYGRIA 269
           Y +T   PT+++ + +G F G  +  ++ A  +++ IH   P QG + P+    ++G I 
Sbjct: 10  YSLTIQPPTAITQAILGQFAGTKEQQIVTASGSKLTIHRPDPTQGKITPIYSQDVFGIIR 69

Query: 270 TIELFRPHNEAQDFLFIATERYKFCVLQW 356
           T+  FR    ++D++ I ++  +  ++++
Sbjct: 70  TLAAFRLAGSSKDYIIIGSDSGRITIIEY 98

>RSE1_EMENI (Q5B1X8) Pre-mRNA-splicing factor rse1|
          Length = 1226

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 21/89 (23%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
 Frame = +3

Query: 96  YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTP-QG-LQPMLDVPIYGRIA 269
           Y +T   PT+++ + +G F G  +  ++ A  +++ IH   P QG + P+    ++G I 
Sbjct: 10  YSLTIQPPTAITQAILGQFAGTKEQQIVTASGSKLTIHRPDPTQGKVIPLYTQDVFGIIR 69

Query: 270 TIELFRPHNEAQDFLFIATERYKFCVLQW 356
           T+  FR     +D++ I ++  +  ++++
Sbjct: 70  TLAAFRLAGSNKDYIIIGSDSGRITIIEY 98

>RSE1_USTMA (Q4PGM6) Pre-mRNA-splicing factor RSE1|
          Length = 1221

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
 Frame = +3

Query: 96  YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPI----YGR 263
           Y +T     SV+ + VG F+G  Q  +IVAK +R+E  LL P      +D  +    +G 
Sbjct: 7   YNLTLQASGSVNATVVGQFSGTRQQEIIVAKGSRLE--LLRPDTQTGKVDTVLSHDAFGV 64

Query: 264 IATIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSEL 377
           I ++  FR    ++D++ + ++  +  +L++  + + L
Sbjct: 65  IRSLAAFRLTGGSKDYVIVGSDSGRIVILEYQPKTNSL 102

>RSE1_NEUCR (Q7RYR4) Pre-mRNA-splicing factor rse-1|
          Length = 1271

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 22/89 (24%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
 Frame = +3

Query: 96  YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTP-QG-LQPMLDVPIYGRIA 269
           Y +T   PT+V+ + +G F+G  +  ++ A  +R+ +    P QG +  +L   I+G + 
Sbjct: 10  YSLTIQPPTAVTQALLGQFSGTKEQQILTASGSRLTLLQPDPRQGKVNTLLSHDIFGIVR 69

Query: 270 TIELFRPHNEAQDFLFIATERYKFCVLQW 356
            I  FR     +D++ +AT+  +  ++++
Sbjct: 70  AIASFRLAGSHKDYIILATDSGRITIIEY 98

>RSE1_MAGGR (Q52E49) Pre-mRNA-splicing factor RSE1|
          Length = 1229

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 19/89 (21%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
 Frame = +3

Query: 96  YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTP-QG-LQPMLDVPIYGRIA 269
           Y ++   P++++ + +G F+G  +  ++ A  +R+ ++   P QG + P++   ++G I 
Sbjct: 10  YSLSIQPPSTITRAILGQFSGTKEQQIVAASGSRLTLYRPDPTQGKVVPLMSHDVFGIIR 69

Query: 270 TIELFRPHNEAQDFLFIATERYKFCVLQW 356
            +  FR    ++D+L IA++  +  ++++
Sbjct: 70  DLASFRLAGSSKDYLIIASDSGRITIVEY 98

>RIK1_SCHPO (Q10426) Silencing protein rik1|
          Length = 1040

 Score = 35.0 bits (79), Expect = 0.077
 Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +3

Query: 174 LIVAKCTRIEIHLLTP-QGLQPMLDVPIYGRIATIELFRPHNEAQDFLFIATERYKFCVL 350
           L++ +  +I I+L +   GLQ    +P++  +  I  +RP    +D+LF+      +  +
Sbjct: 28  LVLLQALKINIYLCSEVHGLQFFTSIPLFSTVKHIRPYRPPGLDRDYLFVVLNDDTYFSI 87

Query: 351 QWDAEKSELL 380
            WD +  +++
Sbjct: 88  YWDEDYQKVI 97

>RSE1_CRYNE (Q5KP25) Pre-mRNA-splicing factor RSE1|
          Length = 1217

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
 Frame = +3

Query: 102 VTAHKPTSVSHSCVGNFTG-PHQLNLIVAKCTRIEIHLL--TPQGLQPMLDVPIYGRIAT 272
           +T   PT+VS + VG+F+G   Q  L V   T++EI  L  T   L  ++    +G I  
Sbjct: 6   LTLSSPTNVSTAVVGSFSGSKSQEILCVRGGTKLEIFKLNATTGQLDTIVSTEAFGTIRN 65

Query: 273 IELFRPHNEAQDFLFIATERYKFCVLQW 356
           I  FR     +D++   ++  +  +L++
Sbjct: 66  IAGFRLAGMTKDYILATSDSGRLSILEF 93

>TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Tara)|
            (Trio-associated repeat on actin)
          Length = 2365

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -2

Query: 350  QDAELVPLRGNEEEVLGLIVRAEELDRRDPPIYGH--VQHRLEALRRE 213
            Q+ E +PLR N+   L  ++     +RR PP  GH  ++  ++ALR +
Sbjct: 2031 QELEKLPLRENKRVPLTALLNQSRGERRGPPSDGHEALEKEVQALRAQ 2078

>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c|
           precursor
          Length = 943

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = +1

Query: 244 TCPYMGGSRRSSSSALTMRPRTSSSLPRRGTSSASCSGTQKNQSFSLDPWEMFLIASAA 420
           T  Y   +  +SSS+LT     SSSL    TSS+S + +  N + S  P    L +S+A
Sbjct: 60  TTSYNYNTSSASSSSLTSSSAASSSL----TSSSSLASSSTNSTTSASPTSSSLTSSSA 114

>FCMD_HUMAN (O75072) Fukutin (EC 2.-.-.-) (Fukuyama-type congenital muscular|
           dystrophy protein)
          Length = 461

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 431 IVRRAADAIRNISHGSSEKL*FFCVP 354
           ++ +  + ++N SHGS+ +  FFCVP
Sbjct: 82  LINKNFEQVKNTSHGSTSQCKFFCVP 107

>SNX41_SCHPO (O60107) Sorting nexin-41|
          Length = 586

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 250 PYMGGSRRSSSSALTMRPRTSSSLPRRGTSSASCSGTQKNQSF 378
           P+ G   RS+SSA+ + P+   S  +  +S    + +Q N+SF
Sbjct: 9   PFSGSDNRSASSAVNVEPKVEPSQHQGSSSVKENAISQPNESF 51

>CENG1_HUMAN (Q99490) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,|
            ankyrin repeat and pleckstrin homology domains 2)
            (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE)
            (GTP-binding and GTPase activating protein 2) (GGAP2)
          Length = 1192

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 247  CPYMGGSRRSSSSALTMRPRTSSSLPRRGTSSAS 348
            CP  GGS  ++ SA T    T++  PRR +S+AS
Sbjct: 1148 CPGEGGSAATTPSAATTPSITATPSPRRRSSAAS 1181

>CENG1_RAT (Q8CGU4) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,|
            ankyrin repeat and pleckstrin homology domains 2)
            (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE)
          Length = 1186

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 247  CPYMGGSRRSSSSALTMRPRTSSSLPRRGTSSAS 348
            CP  GGS  ++ SA T    T++  PRR +S+AS
Sbjct: 1142 CPGEGGSTATTPSAATTPSITATPSPRRRSSAAS 1175

>CENG1_MOUSE (Q3UHD9) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,|
            ankyrin repeat and pleckstrin homology domains 2)
            (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE)
          Length = 1186

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 247  CPYMGGSRRSSSSALTMRPRTSSSLPRRGTSSAS 348
            CP  GGS  ++ SA T    T++  PRR +S+AS
Sbjct: 1142 CPGEGGSTATTPSAATTPSITATPSPRRRSSAAS 1175

>Y066_METJA (Q60377) Hypothetical protein MJ0066|
          Length = 480

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = -2

Query: 419 AADAIRNISHGSSEKL*FFCVPLQDAELVPLRGNEEEVLGLIVRAEE--LDRRDPPIYGH 246
           +++ I+N+  G   K+ FF    +D +   +  N EE   L+VRA E  +D  +    G 
Sbjct: 187 SSEDIKNMEKGKVVKVRFFIKDNEDYKPGKIYDNLEEAFDLMVRANEGVIDNYERNAIGF 246

Query: 245 VQHRLEALRR 216
           +++  E +++
Sbjct: 247 IKNTYEKIKK 256

>PKHD1_HUMAN (Q8TCZ9) Polycystic kidney and hepatic disease 1 precursor|
           (Fibrocystin) (Polyductin) (Tigmin)
          Length = 4074

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 359 VPLQDAELVPLRGNEEEVLGLIVRAEELDRRDPPIYGHVQHRL 231
           +PL  A  VP  G EE    ++V  +   R  PP+ GH + +L
Sbjct: 754 LPLITARSVPTEGTEEGSGLVLVTTQRRQRTSPPLGGHFRIQL 796

>CLPB_CHLPN (Q7AJA9) Chaperone clpB|
          Length = 866

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = -2

Query: 335 VPLRGNEEEVLGLIVRAEELDRRDPPIYGH----VQHRLEALRREEVDLDAG 192
           +P+   E E+  LIV+ E + R   P Y      +Q  ++ALR E   L  G
Sbjct: 409 LPIDEKERELAALIVKQEAIKREQSPSYQEEADAMQKSIDALREELASLRLG 460

>CPSF1_DROME (Q9V726) Cleavage and polyadenylation specificity factor, 160 kDa|
           subunit (CPSF 160 kDa subunit) (CPSF-160) (dCPSF)
          Length = 1455

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 20/114 (17%)
 Frame = +3

Query: 111 HKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTP-------QGLQP----------- 236
           H  T+V  S    F      NL+VA    ++++ + P       Q L P           
Sbjct: 9   HSATAVEFSIACRFFNNLDENLVVAGANVLKVYRIAPNVEASQRQKLNPSEMRLAPKMRL 68

Query: 237 --MLDVPIYGRIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSM 392
             +    +YG + +++        +D L I+ +  K  VLQ D +   L T S+
Sbjct: 69  ECLATYTLYGNVMSLQCVSLAGAMRDALLISFKDAKLSVLQHDPDTFALKTLSL 122

>KCC4_YEAST (P25389) Probable serine/threonine-protein kinase KCC4 (EC|
           2.7.11.1)
          Length = 1037

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +1

Query: 265 SRRSSSSALTMRPRTSSSLPRRGTS---SASCSGTQKNQSFSL 384
           S  SSSS+L +  R+  S PRR TS   S   S ++K  SF L
Sbjct: 389 STLSSSSSLLLNNRSIQSTPRRRTSKRHSREFSSSRKRSSFLL 431

>VGLX_EHV1B (P28968) Glycoprotein X precursor|
          Length = 797

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 262 GSRRSSSSALTMRPRTSSSLP-RRGTSSASCSGTQKNQS 375
           G+  SSSS  T  P TSSS P    TSS S + TQ + +
Sbjct: 45  GTTNSSSSPTTSPPTTSSSPPTSTHTSSPSSTSTQSSST 83

>VGLX_EHV1V (Q6S6W0) Glycoprotein X precursor|
          Length = 866

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 262 GSRRSSSSALTMRPRTSSSLP-RRGTSSASCSGTQKNQS 375
           G+  SSSS  T  P TSSS P    TSS S + TQ + +
Sbjct: 45  GTTNSSSSPTTSPPTTSSSPPTSTHTSSPSSTSTQSSST 83

>CPSF1_HUMAN (Q10570) Cleavage and polyadenylation specificity factor, 160 kDa|
           subunit (CPSF 160 kDa subunit)
          Length = 1443

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 18/113 (15%)
 Frame = +3

Query: 108 AHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLT------------------PQGLQ 233
           AH PT +  S   NF    + NL+VA  +++ ++ L                    + L+
Sbjct: 8   AHPPTGLEFSMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEALTKNDRSTEGKAHREKLE 67

Query: 234 PMLDVPIYGRIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSM 392
                  +G + ++   +     +D L ++ +  K  V+++D    +L T S+
Sbjct: 68  LAASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSL 120


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,752,472
Number of Sequences: 219361
Number of extensions: 882484
Number of successful extensions: 3634
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 3364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3568
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)