ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl09b12 |
|---|---|
| Clone Library Name | barley_pub |
>RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 550 Score = 34.3 bits (77), Expect = 0.13 Identities = 23/61 (37%), Positives = 26/61 (42%) Frame = -1 Query: 246 AGPDPDPDLARGAAAQKKGEGKPHSSFDGTWTRSGGASRGWPAVPKRRPPGGAVRWRGCG 67 +G P P RG A+ +G G P G R G G P P RPPGG R G Sbjct: 491 SGGRPGPGGNRGPASANRGPGGP-----GGGARGPGGPGGAPRGPGGRPPGGGNRRPPGG 545 Query: 66 G 64 G Sbjct: 546 G 546
>SRCA_HUMAN (Q86TD4) Sarcalumenin precursor| Length = 932 Score = 31.6 bits (70), Expect = 0.83 Identities = 18/53 (33%), Positives = 22/53 (41%) Frame = -1 Query: 246 AGPDPDPDLARGAAAQKKGEGKPHSSFDGTWTRSGGASRGWPAVPKRRPPGGA 88 AGPDP+ L+ +A E P D G + P V PPGGA Sbjct: 89 AGPDPEASLSNASAT----ESPPPGERDDRDAAGPGEEKNGPPVASALPPGGA 137
>YHL1_EBV (P03181) Hypothetical protein BHLF1| Length = 660 Score = 31.6 bits (70), Expect = 0.83 Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Frame = -1 Query: 246 AGPDPDPDLARGAAAQKKGEGKPHSSFDG----TWTRSGGASRGWPAVPKRRPPGGAVRW 79 AGP P A ++ G P S+ + TW R GA RG P PPG R Sbjct: 500 AGPPPTRSGAAAQRTHRRPPGCPRSARNPGCPRTWRRRSGAQRGHP------PPGAGQRP 553 Query: 78 RG-CGGR 61 G GGR Sbjct: 554 SGPTGGR 560 Score = 31.6 bits (70), Expect = 0.83 Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Frame = -1 Query: 246 AGPDPDPDLARGAAAQKKGEGKPHSSFDG----TWTRSGGASRGWPAVPKRRPPGGAVRW 79 AGP P A ++ G P S+ + TW R GA RG P PPG R Sbjct: 375 AGPPPTRSGAAAQRTHRRPPGCPRSARNPGCPRTWRRRSGAQRGHP------PPGAGQRP 428 Query: 78 RG-CGGR 61 G GGR Sbjct: 429 SGPTGGR 435 Score = 31.6 bits (70), Expect = 0.83 Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Frame = -1 Query: 246 AGPDPDPDLARGAAAQKKGEGKPHSSFDG----TWTRSGGASRGWPAVPKRRPPGGAVRW 79 AGP P A ++ G P S+ + TW R GA RG P PPG R Sbjct: 250 AGPPPTRSGAAAQRTHRRPPGCPRSARNPGCPRTWRRRSGAQRGHP------PPGAGQRP 303 Query: 78 RG-CGGR 61 G GGR Sbjct: 304 SGPTGGR 310 Score = 28.1 bits (61), Expect = 9.2 Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Frame = -1 Query: 252 GVAGPDPDPDLARGAAAQKKGEGKPHSSFDGTWTRSGGASRGWPAVPKRRPPGGAVRWRG 73 G GP P P +A+ G + TW R GA RG P PPG R G Sbjct: 134 GSRGPRPHPAFQVQWSARNPGCPR-------TWRRRSGAQRGHP------PPGAGQRPSG 180 Query: 72 -CGGR 61 GGR Sbjct: 181 PTGGR 185
>SURE_XANOR (Q5GYL1) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 259 Score = 31.6 bits (70), Expect = 0.83 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = -1 Query: 153 TRSGGASRGWPAVPKRRPPGGAVRWRGCGGRESES 49 TR G R P VP+R P G V W G G E ++ Sbjct: 178 TRLGNRHRSEPCVPQRDPRGRTVYWIGPAGPEQDA 212
>SURE_XANOM (Q2P1L4) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 259 Score = 31.6 bits (70), Expect = 0.83 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = -1 Query: 153 TRSGGASRGWPAVPKRRPPGGAVRWRGCGGRESES 49 TR G R P VP+R P G V W G G E ++ Sbjct: 178 TRLGNRHRSEPCVPQRDPRGRTVYWIGPAGPEQDA 212
>SURE_XANC5 (Q3BUS4) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 259 Score = 31.6 bits (70), Expect = 0.83 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = -1 Query: 153 TRSGGASRGWPAVPKRRPPGGAVRWRGCGGRESES 49 TR G R P VP+R P G V W G G E ++ Sbjct: 178 TRLGNRHRSEPCVPQRDPRGRTVYWIGPAGPEQDA 212
>SURE_XANAC (Q8PLR4) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 259 Score = 31.6 bits (70), Expect = 0.83 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = -1 Query: 153 TRSGGASRGWPAVPKRRPPGGAVRWRGCGGRESES 49 TR G R P VP+R P G V W G G E ++ Sbjct: 178 TRLGNRHRSEPCVPQRDPRGHTVYWIGPAGPEQDA 212
>CCDC9_HUMAN (Q9Y3X0) Coiled-coil domain-containing protein 9| Length = 531 Score = 30.8 bits (68), Expect = 1.4 Identities = 20/56 (35%), Positives = 21/56 (37%) Frame = -1 Query: 228 PDLARGAAAQKKGEGKPHSSFDGTWTRSGGASRGWPAVPKRRPPGGAVRWRGCGGR 61 P R A K G P G G ASR W P +P GG RG GR Sbjct: 81 PGTPRPPGASKGGRTPPQQ---GGRAGMGRASRSWEGSPGEQPRGGGAGGRGRRGR 133
>MRTFB_XENLA (Q8AYC1) Myocardin-related transcription factor B (MRTF-B)| (xMRTF-B) Length = 1067 Score = 30.4 bits (67), Expect = 1.9 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +3 Query: 303 RSENTTRVTLCRSWAGRPPLQCCYDCQRS 389 + +NT T+C AG PP QC + Q S Sbjct: 349 KKQNTINTTICNGNAGAPPAQCSVNRQNS 377
>PUM1_HUMAN (Q14671) Pumilio homolog 1 (Pumilio-1) (HsPUM)| Length = 1186 Score = 30.0 bits (66), Expect = 2.4 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%) Frame = -2 Query: 410 PVLMCAPRPLAVVAALKRGTASPGATQSN--SGGVFGTTNTP 291 PV + AP P+ + ++ + + A +N +GG+ GTTN P Sbjct: 578 PVRLVAPAPVIISSSAAQAAVAAAAASANGAAGGLAGTTNGP 619
>UL49_HHV11 (P10233) Tegument protein UL49| Length = 301 Score = 30.0 bits (66), Expect = 2.4 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 8/64 (12%) Frame = -1 Query: 252 GVAGPDPDPDLARGAAAQKKGEGKPHSSF----DGTWTRSGGASR---GWPAVPK-RRPP 97 G+A PD PD +R A Q + + F + + GG+S P VP+ RRP Sbjct: 29 GMASPDSPPDTSRRGALQTRSRQRGEVRFVQYDESDYALYGGSSSEDDEHPEVPRTRRPV 88 Query: 96 GGAV 85 GAV Sbjct: 89 SGAV 92
>PUM1_MOUSE (Q80U78) Pumilio homolog 1| Length = 1189 Score = 30.0 bits (66), Expect = 2.4 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%) Frame = -2 Query: 410 PVLMCAPRPLAVVAALKRGTASPGATQSN--SGGVFGTTNTP 291 PV + AP P+ + ++ + + A +N +GG+ GTTN P Sbjct: 579 PVRLVAPAPVIISSSAAQAAVAAAAASANGAAGGLAGTTNGP 620
>SURE_XANCP (Q8P9Y7) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 259 Score = 29.6 bits (65), Expect = 3.2 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = -1 Query: 153 TRSGGASRGWPAVPKRRPPGGAVRWRGCGGRESES 49 TR G R P VP+ P G V W G G E ++ Sbjct: 178 TRLGNRHRSEPCVPQNDPRGRTVYWIGPAGPEQDA 212
>SURE_XANC8 (Q4UTP8) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 259 Score = 29.6 bits (65), Expect = 3.2 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = -1 Query: 153 TRSGGASRGWPAVPKRRPPGGAVRWRGCGGRESES 49 TR G R P VP+ P G V W G G E ++ Sbjct: 178 TRLGNRHRSEPCVPQNDPRGRTVYWIGPAGPEQDA 212
>IF2_THEFY (Q47RV1) Translation initiation factor IF-2| Length = 955 Score = 29.6 bits (65), Expect = 3.2 Identities = 21/59 (35%), Positives = 25/59 (42%) Frame = -1 Query: 240 PDPDPDLARGAAAQKKGEGKPHSSFDGTWTRSGGASRGWPAVPKRRPPGGAVRWRGCGG 64 P P P AR + + + G G+ G R GGA G P PGG RG GG Sbjct: 259 PTP-PGGARPSTSSRSGGGRGRGGGGGAGPRGGGAGGGAPRTGFGGRPGGG---RGRGG 313
>T53G5_HUMAN (Q9Y2B4) TP53-target gene 5 protein (TP53-inducible gene 5 protein)| Length = 290 Score = 29.3 bits (64), Expect = 4.1 Identities = 11/14 (78%), Positives = 12/14 (85%) Frame = -1 Query: 165 DGTWTRSGGASRGW 124 D TWTR+ GASRGW Sbjct: 258 DVTWTRARGASRGW 271
>KLF14_HUMAN (Q8TD94) Krueppel-like factor 14 (Transcription factor BTEB5)| (Basic transcription element-binding protein 5) (BTE-binding protein 5) Length = 323 Score = 29.3 bits (64), Expect = 4.1 Identities = 16/48 (33%), Positives = 20/48 (41%) Frame = -1 Query: 234 PDPDLARGAAAQKKGEGKPHSSFDGTWTRSGGASRGWPAVPKRRPPGG 91 PDP+ A GAA + G P S+ G + P VP P G Sbjct: 30 PDPEGAGGAAGSEVGAAHPESALPGPGPSGPASVPQLPQVPAPSPGAG 77
>MPR_BACSU (P39790) Extracellular metalloprotease precursor (EC 3.4.21.-)| Length = 313 Score = 29.3 bits (64), Expect = 4.1 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 7/61 (11%) Frame = -1 Query: 210 AAAQKKGEGKPHSSFDGT-------WTRSGGASRGWPAVPKRRPPGGAVRWRGCGGRESE 52 AA + G P+ ++ GT WT S + + A+ PG V W G S Sbjct: 161 AAPGRNGSSYPYGTYSGTMFYSVKGWTESKDTNYDYGAIKLNGSPGNTVGWYGYRTTNSS 220 Query: 51 S 49 S Sbjct: 221 S 221
>NU214_HUMAN (P35658) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)| (214 kDa nucleoporin) (CAN protein) Length = 2090 Score = 29.3 bits (64), Expect = 4.1 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 3/87 (3%) Frame = -1 Query: 252 GVAGPDPDPDL--ARGAAAQKKGEGKPHSSFDGTWTRSGGASRGWPAVPKRRPPGGAVRW 79 G+ P P + A+GA K +P + G GG+ + A+P+ PP G Sbjct: 1226 GIITPTPSSNFTAAQGATPSTKESSQPDAFSSG-----GGSKPSYEAIPESSPPSGITSA 1280 Query: 78 RG-CGGRESESTDDPFSSSHNIFTTLS 1 G + S+ P + S +T S Sbjct: 1281 SNTTPGEPAASSSRPVAPSGTALSTTS 1307
>ATI2_HHV1F (P08314) Alpha trans-inducing factor 77 kDa protein| Length = 715 Score = 29.3 bits (64), Expect = 4.1 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 9/55 (16%) Frame = -1 Query: 246 AGPDPDPDLARGAAAQKKGEGKPHSSFDGTWTRSGGA---------SRGWPAVPK 109 AGP PD D+ARG + G G F G + A RG PAVP+ Sbjct: 434 AGPPPD-DMARGPGGHRAGGGTVGKRFSGPARQRAPAPPPTSPTLDPRGHPAVPE 487
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 28.9 bits (63), Expect = 5.4 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 8/36 (22%) Frame = -2 Query: 380 AVVAALKRGTAS--------PGATQSNSGGVFGTTN 297 A AA+ RGT S PG+T S +GG GTT+ Sbjct: 277 AAAAAVVRGTGSHPWTMAPPPGSTPSRTGGFLGTTS 312
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 28.9 bits (63), Expect = 5.4 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 8/36 (22%) Frame = -2 Query: 380 AVVAALKRGTAS--------PGATQSNSGGVFGTTN 297 A AA+ RGT S PG+T S +GG GTT+ Sbjct: 277 AAAAAVVRGTGSHPWTMAPPPGSTPSRTGGFLGTTS 312
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 28.9 bits (63), Expect = 5.4 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 8/36 (22%) Frame = -2 Query: 380 AVVAALKRGTAS--------PGATQSNSGGVFGTTN 297 A AA+ RGT S PG+T S +GG GTT+ Sbjct: 277 AAAAAVVRGTGSHPWTMAPPPGSTPSRTGGFLGTTS 312
>KSR1_MOUSE (Q61097) Kinase suppressor of ras-1 (Kinase suppressor of ras)| (mKSR1) (Hb protein) Length = 873 Score = 28.5 bits (62), Expect = 7.1 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = +1 Query: 247 HSFLSPPRRPPCASRGVLVVPKTPP 321 HSF++PP P L P+TPP Sbjct: 252 HSFITPPTTPQLRRHAKLKPPRTPP 276
>IF2_CORDI (Q6NGN2) Translation initiation factor IF-2| Length = 953 Score = 28.5 bits (62), Expect = 7.1 Identities = 19/64 (29%), Positives = 23/64 (35%) Frame = -1 Query: 252 GVAGPDPDPDLARGAAAQKKGEGKPHSSFDGTWTRSGGASRGWPAVPKRRPPGGAVRWRG 73 G GP G Q + +G S G R GG R PA+ P G + R Sbjct: 216 GQGGPAERAPRPGGRGGQPRPQGGSRSQQSGGQERQGGGRRPSPAMMPTHPNPGQMPSRS 275 Query: 72 CGGR 61 G R Sbjct: 276 NGSR 279
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 28.5 bits (62), Expect = 7.1 Identities = 13/44 (29%), Positives = 22/44 (50%) Frame = -1 Query: 192 GEGKPHSSFDGTWTRSGGASRGWPAVPKRRPPGGAVRWRGCGGR 61 G+G + G W + GG +G P+++ GG +G GG+ Sbjct: 248 GQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQ 291
>CEAC_ECOLI (P00645) Cloacin (EC 3.1.-.-) (Ribonuclease)| Length = 561 Score = 28.5 bits (62), Expect = 7.1 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -2 Query: 362 KRGTASPGATQSNSGGVFGTTNTP 291 K G +S G T NSG +GTT+TP Sbjct: 31 KGGPSSGGGTDPNSGPGWGTTHTP 54
>GRP33_ARTSA (P13230) Glycine-rich protein GRP33| Length = 308 Score = 28.1 bits (61), Expect = 9.2 Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 7/67 (10%) Frame = -1 Query: 252 GVAGPDPDPDLARGAAAQKKGEGKPHSSFDGTWTRSGG-------ASRGWPAVPKRRPPG 94 G +GPD DL A P FD ++ GG + GW A P R Sbjct: 218 GFSGPDRTFDLLEKARMNTSETMDPGYGFDESYCGMGGGYEMPYNGNAGWTASPGRGAGA 277 Query: 93 GAVRWRG 73 GA RG Sbjct: 278 GARGARG 284
>TSC1_SCHPO (Q09778) Tuberous sclerosis 1 protein homolog| Length = 899 Score = 28.1 bits (61), Expect = 9.2 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +1 Query: 244 CHSFLSPPRRPPCASRGVLVVPKTPPEL 327 CH FL+PP R P S V V+ + P L Sbjct: 195 CHHFLNPPTRIPILSVMVEVIRRQGPRL 222
>SURE_METCA (Q604W8) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 251 Score = 28.1 bits (61), Expect = 9.2 Identities = 19/64 (29%), Positives = 24/64 (37%) Frame = -1 Query: 240 PDPDPDLARGAAAQKKGEGKPHSSFDGTWTRSGGASRGWPAVPKRRPPGGAVRWRGCGGR 61 PD PD RG A TR G + V R P G + W GC G Sbjct: 162 PDIPPDELRGYRA----------------TRLGARHKAEAVVRTRDPRGREIFWVGCAGP 205 Query: 60 ESES 49 E+++ Sbjct: 206 EADA 209
>SLR1_ORYSA (Q7G7J6) DELLA protein SLR1 (Protein SLENDER RICE1) (Gibberellic| acid-insensitive mutant protein) (OsGAI) Length = 625 Score = 28.1 bits (61), Expect = 9.2 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = -1 Query: 249 VAGPDPDP-DLARGAAAQKKGEGKPHSSFDGTWTRSGGASRGWPAVPKRRPP 97 VA DP D AR + G G SS + + GGASRG +V + PP Sbjct: 165 VATADPSAADSARDTKRMRTGGGSTSSSSSSSSSLGGGASRG--SVVEAAPP 214
>MERT_STAAU (P08656) Mercuric transport protein (Mercury ion transport protein)| Length = 128 Score = 28.1 bits (61), Expect = 9.2 Identities = 17/42 (40%), Positives = 21/42 (50%) Frame = +1 Query: 292 GVLVVPKTPPELLCVAPGLAVPLFNAATTASGRGAHINTGSW 417 G+L+VP P L C P L V L + A GA TG+W Sbjct: 35 GILLVPLLVPLLCCAGPILLVALGSTGIGALFAGA---TGNW 73 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,435,337 Number of Sequences: 219361 Number of extensions: 915175 Number of successful extensions: 3592 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 3404 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3586 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
