ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl09b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y1536_PSEAE (Q9I3H7) Hypothetical UPF0167 protein PA1536 29 2.4
2SYFA_HUMAN (Q9Y285) Phenylalanyl-tRNA synthetase alpha chain (EC... 28 6.9

>Y1536_PSEAE (Q9I3H7) Hypothetical UPF0167 protein PA1536|
          Length = 179

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 220 PRRRPHPHIMASGFSTASSTQISCCASTAG 309
           P  R HP  +ASG   AS+T   CC    G
Sbjct: 6   PHFRYHPEPLASGSIEASATTCQCCGKARG 35



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>SYFA_HUMAN (Q9Y285) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase alpha chain) (PheRS) (CML33)
          Length = 507

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 197 LCRLLAHPRPPPERDEA 147
           LCRL A PRPPP ++ A
Sbjct: 491 LCRLDAEPRPPPTQEAA 507


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.120    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,390,765
Number of Sequences: 219361
Number of extensions: 340133
Number of successful extensions: 851
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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