Clone Name | bastl09b07 |
---|---|
Clone Library Name | barley_pub |
>gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible lipoxygenase 2 mRNA, complete cds Length = 3054 Score = 391 bits (197), Expect = e-105 Identities = 197/197 (100%) Strand = Plus / Plus Query: 162 tgccagggcagggttgcacagtctagctaggtcgaaaccaaccaagacggtgcaaccttc 221 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tgccagggcagggttgcacagtctagctaggtcgaaaccaaccaagacggtgcaaccttc 60 Query: 222 cgccccatcgcgtagcgcaatagccaacaccgtagcgtacccacgatgctgacggcgacc 281 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 cgccccatcgcgtagcgcaatagccaacaccgtagcgtacccacgatgctgacggcgacc 120 Query: 282 aagccgctagtcgggggcgcgtgtgccgcgccgtcgtcgtcggcccggcggaggacgttc 341 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aagccgctagtcgggggcgcgtgtgccgcgccgtcgtcgtcggcccggcggaggacgttc 180 Query: 342 gtggtgcccgaggctcg 358 ||||||||||||||||| Sbjct: 181 gtggtgcccgaggctcg 197
>ref|NM_102798.1| Arabidopsis thaliana EMB2279 AT1G30610 (EMB2279) mRNA, complete cds Length = 3021 Score = 44.1 bits (22), Expect = 0.30 Identities = 28/30 (93%) Strand = Plus / Minus Query: 135 cttccatcacctcttcctttcctgatctgc 164 ||||||||||||| |||||||||| ||||| Sbjct: 2689 cttccatcacctcctcctttcctgctctgc 2660
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 295 ggggcgcgtgtgccgcgccgtcgtcgtcg 323 |||||||||||||||||||| || ||||| Sbjct: 996213 ggggcgcgtgtgccgcgccggcgccgtcg 996241
>gb|AC140311.2| Mus musculus BAC clone RP23-392M3 from chromosome 9, complete sequence Length = 195460 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 acacacacacataaaatagac 21 ||||||||||||||||||||| Sbjct: 93817 acacacacacataaaatagac 93837
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 307 ccgcgccgtcgtcgtcggccc 327 ||||||||||||||||||||| Sbjct: 11464690 ccgcgccgtcgtcgtcggccc 11464670
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 295 ggggcgcgtgtgccgcgccgtcgtcgtcg 323 |||||||||||||||||||| || ||||| Sbjct: 2313682 ggggcgcgtgtgccgcgccggcgccgtcg 2313710
>gb|AC119748.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0042L15, from chromosome 3, complete sequence Length = 172475 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 307 ccgcgccgtcgtcgtcggccc 327 ||||||||||||||||||||| Sbjct: 15262 ccgcgccgtcgtcgtcggccc 15242
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 295 ggggcgcgtgtgccgcgccgtcgtcgtcg 323 |||||||||||||||||||| || ||||| Sbjct: 1861233 ggggcgcgtgtgccgcgccggcgccgtcg 1861261
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 307 ccgcgccgtcgtcgtcggccc 327 ||||||||||||||||||||| Sbjct: 11461453 ccgcgccgtcgtcgtcggccc 11461433
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 gccgcgccgtcgtcgtcggcc 326 ||||||||||||||||||||| Sbjct: 293702 gccgcgccgtcgtcgtcggcc 293682
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 306 gccgcgccgtcgtcgtcggcc 326 ||||||||||||||||||||| Sbjct: 2096821 gccgcgccgtcgtcgtcggcc 2096841 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 ccgcgccgtcgtcgtcggcc 326 |||||||||||||||||||| Sbjct: 4599530 ccgcgccgtcgtcgtcggcc 4599549
>gb|AC163661.4| Mus musculus BAC clone RP23-288B18 from chromosome 10, complete sequence Length = 210846 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 acacacacacataaaataga 20 |||||||||||||||||||| Sbjct: 161768 acacacacacataaaataga 161749
>gb|AC118932.7| Mus musculus chromosome 5, clone RP24-147H20, complete sequence Length = 168156 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 acacacacacataaaataga 20 |||||||||||||||||||| Sbjct: 70250 acacacacacataaaataga 70231
>gb|AC134048.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0076K20, complete sequence Length = 127338 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 catatgtaggagtattttct 89 |||||||||||||||||||| Sbjct: 59419 catatgtaggagtattttct 59438
>gb|AC118628.11| Mus musculus chromosome 19, clone RP24-92P15, complete sequence Length = 202071 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 acacacacacataaaataga 20 |||||||||||||||||||| Sbjct: 29827 acacacacacataaaataga 29808
>gb|AC121500.6| Mus musculus chromosome 5, clone RP23-471H10, complete sequence Length = 179337 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 acacacacacataaaataga 20 |||||||||||||||||||| Sbjct: 2111 acacacacacataaaataga 2130
>gb|AC146894.4| X. tropicalis BAC clone containing gene for egr, complete sequence Length = 96960 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 cctatacatatgtaggagta 83 |||||||||||||||||||| Sbjct: 74753 cctatacatatgtaggagta 74734
>gb|AC146383.4| Pan troglodytes BAC clone RP43-125D18 from 7, complete sequence Length = 141329 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 147 cttcctttcctgatctgccagggc 170 |||||||||||||| ||||||||| Sbjct: 31172 cttcctttcctgatgtgccagggc 31149
>gb|AC121926.3| Mus musculus BAC clone RP24-202B3 from chromosome 10, complete sequence Length = 185398 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 acacacacacataaaataga 20 |||||||||||||||||||| Sbjct: 87514 acacacacacataaaataga 87495
>gb|AC115768.9| Mus musculus chromosome 19, clone RP23-107E10, complete sequence Length = 212161 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 acacacacacataaaataga 20 |||||||||||||||||||| Sbjct: 192447 acacacacacataaaataga 192428
>gb|AC136139.24| Medicago truncatula clone mth2-22c2, complete sequence Length = 66079 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 cacacataaaatagacgaattcat 29 ||||||||||||||||| |||||| Sbjct: 38462 cacacataaaatagacgcattcat 38485
>gb|AC174344.9| Medicago truncatula clone mth2-167b8, complete sequence Length = 141135 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 aaaatagacgaattcatcaaaata 36 |||||||| ||||||||||||||| Sbjct: 108114 aaaatagatgaattcatcaaaata 108091
>gb|AC108148.5| Homo sapiens BAC clone RP11-444B12 from 4, complete sequence Length = 93048 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 acacacacacataaaataga 20 |||||||||||||||||||| Sbjct: 30657 acacacacacataaaataga 30638
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 catatgtaggagtattttct 89 |||||||||||||||||||| Sbjct: 2667379 catatgtaggagtattttct 2667360
>gb|AC008282.4| Homo sapiens BAC clone RP11-516B14 from 2, complete sequence Length = 203241 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 acacacacacataaaataga 20 |||||||||||||||||||| Sbjct: 88245 acacacacacataaaataga 88226 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 acacacacacataaaataga 20 |||||||||||||||||||| Sbjct: 88205 acacacacacataaaataga 88186
>gb|AC157213.2| Mus musculus BAC clone RP23-157N5 from chromosome 12, complete sequence Length = 211304 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 acacacacacataaaataga 20 |||||||||||||||||||| Sbjct: 129189 acacacacacataaaataga 129208
>gb|AC006960.1|AC006960 Homo sapiens clone RP11-182J23 from 7p14-15, complete sequence Length = 179757 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 147 cttcctttcctgatctgccagggc 170 |||||||||||||| ||||||||| Sbjct: 137738 cttcctttcctgatgtgccagggc 137761
>gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier, hypothetical protein, putative NAM protein, putative cis-zeatin O-glucosyltransferases, putative small nuclear ribonucleoprotein, putative cis-zeatin O-glucosyltransferase, putative glutathione peroxidase, putative copper-exporting ATPases, putative serine/threonine dehydratase, and putative actin depolymerizing factor genes, complete cds; and hypothetical protein gene, partial cds Length = 157237 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 gtgccgcgccgtcgtcgtcg 323 |||||||||||||||||||| Sbjct: 4453 gtgccgcgccgtcgtcgtcg 4472
>gb|AC152922.5| Mus musculus BAC clone RP24-386D3 from 10, complete sequence Length = 191855 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 acacacacacataaaataga 20 |||||||||||||||||||| Sbjct: 20150 acacacacacataaaataga 20131
>emb|CT571243.9| Mouse DNA sequence from clone RP23-122I21 on chromosome 9, complete sequence Length = 158763 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 acacacacacataaaataga 20 |||||||||||||||||||| Sbjct: 65144 acacacacacataaaataga 65163
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 catatgtaggagtattttct 89 |||||||||||||||||||| Sbjct: 2676410 catatgtaggagtattttct 2676391
>gb|U90140.1|CBU90140 Citrobacter braakii TyrR (tyrR) gene, complete cds Length = 2046 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 gatccttccatcacctcttc 150 |||||||||||||||||||| Sbjct: 1761 gatccttccatcacctcttc 1742
>gb|AC171204.1| Mus musculus BAC clone RP23-312J21 from chromosome 9, complete sequence Length = 223399 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 acacacacacataaaataga 20 |||||||||||||||||||| Sbjct: 109983 acacacacacataaaataga 110002 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,435,990 Number of Sequences: 3902068 Number of extensions: 13435990 Number of successful extensions: 93189 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92628 Number of HSP's gapped (non-prelim): 561 length of query: 358 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 336 effective length of database: 17,147,199,772 effective search space: 5761459123392 effective search space used: 5761459123392 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)