ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl09b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible l... 391 e-105
2ref|NM_102798.1| Arabidopsis thaliana EMB2279 AT1G30610 (EMB2279... 44 0.30
3gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 42 1.2
4gb|AC140311.2| Mus musculus BAC clone RP23-392M3 from chromosome... 42 1.2
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.2
6emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 42 1.2
7gb|AC119748.1| Genomic sequence for Oryza sativa, Nipponbare str... 42 1.2
8gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 42 1.2
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
10dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.2
11gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 42 1.2
12gb|AC163661.4| Mus musculus BAC clone RP23-288B18 from chromosom... 40 4.8
13gb|AC118932.7| Mus musculus chromosome 5, clone RP24-147H20, com... 40 4.8
14gb|AC134048.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.8
15gb|AC118628.11| Mus musculus chromosome 19, clone RP24-92P15, co... 40 4.8
16gb|AC121500.6| Mus musculus chromosome 5, clone RP23-471H10, com... 40 4.8
17gb|AC146894.4| X. tropicalis BAC clone containing gene for egr, ... 40 4.8
18gb|AC146383.4| Pan troglodytes BAC clone RP43-125D18 from 7, com... 40 4.8
19gb|AC121926.3| Mus musculus BAC clone RP24-202B3 from chromosome... 40 4.8
20gb|AC115768.9| Mus musculus chromosome 19, clone RP23-107E10, co... 40 4.8
21gb|AC136139.24| Medicago truncatula clone mth2-22c2, complete se... 40 4.8
22gb|AC174344.9| Medicago truncatula clone mth2-167b8, complete se... 40 4.8
23gb|AC108148.5| Homo sapiens BAC clone RP11-444B12 from 4, comple... 40 4.8
24dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
25gb|AC008282.4| Homo sapiens BAC clone RP11-516B14 from 2, comple... 40 4.8
26gb|AC157213.2| Mus musculus BAC clone RP23-157N5 from chromosome... 40 4.8
27gb|AC006960.1|AC006960 Homo sapiens clone RP11-182J23 from 7p14-... 40 4.8
28gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putativ... 40 4.8
29gb|AC152922.5| Mus musculus BAC clone RP24-386D3 from 10, comple... 40 4.8
30emb|CT571243.9| Mouse DNA sequence from clone RP23-122I21 on chr... 40 4.8
31gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.8
32gb|U90140.1|CBU90140 Citrobacter braakii TyrR (tyrR) gene, compl... 40 4.8
33gb|AC171204.1| Mus musculus BAC clone RP23-312J21 from chromosom... 40 4.8

>gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible lipoxygenase 2 mRNA,
           complete cds
          Length = 3054

 Score =  391 bits (197), Expect = e-105
 Identities = 197/197 (100%)
 Strand = Plus / Plus

                                                                       
Query: 162 tgccagggcagggttgcacagtctagctaggtcgaaaccaaccaagacggtgcaaccttc 221
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tgccagggcagggttgcacagtctagctaggtcgaaaccaaccaagacggtgcaaccttc 60

                                                                       
Query: 222 cgccccatcgcgtagcgcaatagccaacaccgtagcgtacccacgatgctgacggcgacc 281
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cgccccatcgcgtagcgcaatagccaacaccgtagcgtacccacgatgctgacggcgacc 120

                                                                       
Query: 282 aagccgctagtcgggggcgcgtgtgccgcgccgtcgtcgtcggcccggcggaggacgttc 341
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagccgctagtcgggggcgcgtgtgccgcgccgtcgtcgtcggcccggcggaggacgttc 180

                            
Query: 342 gtggtgcccgaggctcg 358
           |||||||||||||||||
Sbjct: 181 gtggtgcccgaggctcg 197



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>ref|NM_102798.1| Arabidopsis thaliana EMB2279 AT1G30610 (EMB2279) mRNA, complete cds
          Length = 3021

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 135  cttccatcacctcttcctttcctgatctgc 164
            ||||||||||||| |||||||||| |||||
Sbjct: 2689 cttccatcacctcctcctttcctgctctgc 2660



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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 295    ggggcgcgtgtgccgcgccgtcgtcgtcg 323
              |||||||||||||||||||| || |||||
Sbjct: 996213 ggggcgcgtgtgccgcgccggcgccgtcg 996241



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>gb|AC140311.2| Mus musculus BAC clone RP23-392M3 from chromosome 9, complete sequence
          Length = 195460

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1     acacacacacataaaatagac 21
             |||||||||||||||||||||
Sbjct: 93817 acacacacacataaaatagac 93837



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 307      ccgcgccgtcgtcgtcggccc 327
                |||||||||||||||||||||
Sbjct: 11464690 ccgcgccgtcgtcgtcggccc 11464670



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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 295     ggggcgcgtgtgccgcgccgtcgtcgtcg 323
               |||||||||||||||||||| || |||||
Sbjct: 2313682 ggggcgcgtgtgccgcgccggcgccgtcg 2313710



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>gb|AC119748.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0042L15, from chromosome 3, complete sequence
          Length = 172475

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 307   ccgcgccgtcgtcgtcggccc 327
             |||||||||||||||||||||
Sbjct: 15262 ccgcgccgtcgtcgtcggccc 15242



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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 295     ggggcgcgtgtgccgcgccgtcgtcgtcg 323
               |||||||||||||||||||| || |||||
Sbjct: 1861233 ggggcgcgtgtgccgcgccggcgccgtcg 1861261



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 307      ccgcgccgtcgtcgtcggccc 327
                |||||||||||||||||||||
Sbjct: 11461453 ccgcgccgtcgtcgtcggccc 11461433



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 306    gccgcgccgtcgtcgtcggcc 326
              |||||||||||||||||||||
Sbjct: 293702 gccgcgccgtcgtcgtcggcc 293682



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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 306     gccgcgccgtcgtcgtcggcc 326
               |||||||||||||||||||||
Sbjct: 2096821 gccgcgccgtcgtcgtcggcc 2096841



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 307     ccgcgccgtcgtcgtcggcc 326
               ||||||||||||||||||||
Sbjct: 4599530 ccgcgccgtcgtcgtcggcc 4599549



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>gb|AC163661.4| Mus musculus BAC clone RP23-288B18 from chromosome 10, complete sequence
          Length = 210846

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      acacacacacataaaataga 20
              ||||||||||||||||||||
Sbjct: 161768 acacacacacataaaataga 161749



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>gb|AC118932.7| Mus musculus chromosome 5, clone RP24-147H20, complete sequence
          Length = 168156

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     acacacacacataaaataga 20
             ||||||||||||||||||||
Sbjct: 70250 acacacacacataaaataga 70231



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>gb|AC134048.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0076K20, complete sequence
          Length = 127338

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    catatgtaggagtattttct 89
             ||||||||||||||||||||
Sbjct: 59419 catatgtaggagtattttct 59438



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>gb|AC118628.11| Mus musculus chromosome 19, clone RP24-92P15, complete sequence
          Length = 202071

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     acacacacacataaaataga 20
             ||||||||||||||||||||
Sbjct: 29827 acacacacacataaaataga 29808



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>gb|AC121500.6| Mus musculus chromosome 5, clone RP23-471H10, complete sequence
          Length = 179337

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1    acacacacacataaaataga 20
            ||||||||||||||||||||
Sbjct: 2111 acacacacacataaaataga 2130



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>gb|AC146894.4| X. tropicalis BAC clone containing gene for egr, complete sequence
          Length = 96960

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    cctatacatatgtaggagta 83
             ||||||||||||||||||||
Sbjct: 74753 cctatacatatgtaggagta 74734



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>gb|AC146383.4| Pan troglodytes BAC clone RP43-125D18 from 7, complete sequence
          Length = 141329

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 147   cttcctttcctgatctgccagggc 170
             |||||||||||||| |||||||||
Sbjct: 31172 cttcctttcctgatgtgccagggc 31149



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>gb|AC121926.3| Mus musculus BAC clone RP24-202B3 from chromosome 10, complete sequence
          Length = 185398

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     acacacacacataaaataga 20
             ||||||||||||||||||||
Sbjct: 87514 acacacacacataaaataga 87495



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>gb|AC115768.9| Mus musculus chromosome 19, clone RP23-107E10, complete sequence
          Length = 212161

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      acacacacacataaaataga 20
              ||||||||||||||||||||
Sbjct: 192447 acacacacacataaaataga 192428



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>gb|AC136139.24| Medicago truncatula clone mth2-22c2, complete sequence
          Length = 66079

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 6     cacacataaaatagacgaattcat 29
             ||||||||||||||||| ||||||
Sbjct: 38462 cacacataaaatagacgcattcat 38485



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>gb|AC174344.9| Medicago truncatula clone mth2-167b8, complete sequence
          Length = 141135

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 13     aaaatagacgaattcatcaaaata 36
              |||||||| |||||||||||||||
Sbjct: 108114 aaaatagatgaattcatcaaaata 108091



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>gb|AC108148.5| Homo sapiens BAC clone RP11-444B12 from 4, complete sequence
          Length = 93048

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     acacacacacataaaataga 20
             ||||||||||||||||||||
Sbjct: 30657 acacacacacataaaataga 30638



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 70      catatgtaggagtattttct 89
               ||||||||||||||||||||
Sbjct: 2667379 catatgtaggagtattttct 2667360



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>gb|AC008282.4| Homo sapiens BAC clone RP11-516B14 from 2, complete sequence
          Length = 203241

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     acacacacacataaaataga 20
             ||||||||||||||||||||
Sbjct: 88245 acacacacacataaaataga 88226



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     acacacacacataaaataga 20
             ||||||||||||||||||||
Sbjct: 88205 acacacacacataaaataga 88186



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>gb|AC157213.2| Mus musculus BAC clone RP23-157N5 from chromosome 12, complete sequence
          Length = 211304

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      acacacacacataaaataga 20
              ||||||||||||||||||||
Sbjct: 129189 acacacacacataaaataga 129208



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>gb|AC006960.1|AC006960 Homo sapiens clone RP11-182J23 from 7p14-15, complete sequence
          Length = 179757

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 147    cttcctttcctgatctgccagggc 170
              |||||||||||||| |||||||||
Sbjct: 137738 cttcctttcctgatgtgccagggc 137761



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>gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier,
            hypothetical protein, putative NAM protein, putative
            cis-zeatin O-glucosyltransferases, putative small nuclear
            ribonucleoprotein, putative cis-zeatin
            O-glucosyltransferase, putative glutathione peroxidase,
            putative copper-exporting ATPases, putative
            serine/threonine dehydratase, and putative actin
            depolymerizing factor genes, complete cds; and
            hypothetical protein gene, partial cds
          Length = 157237

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 304  gtgccgcgccgtcgtcgtcg 323
            ||||||||||||||||||||
Sbjct: 4453 gtgccgcgccgtcgtcgtcg 4472



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>gb|AC152922.5| Mus musculus BAC clone RP24-386D3 from 10, complete sequence
          Length = 191855

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     acacacacacataaaataga 20
             ||||||||||||||||||||
Sbjct: 20150 acacacacacataaaataga 20131



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>emb|CT571243.9| Mouse DNA sequence from clone RP23-122I21 on chromosome 9, complete
             sequence
          Length = 158763

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     acacacacacataaaataga 20
             ||||||||||||||||||||
Sbjct: 65144 acacacacacataaaataga 65163



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 70      catatgtaggagtattttct 89
               ||||||||||||||||||||
Sbjct: 2676410 catatgtaggagtattttct 2676391



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>gb|U90140.1|CBU90140 Citrobacter braakii TyrR (tyrR) gene, complete cds
          Length = 2046

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 131  gatccttccatcacctcttc 150
            ||||||||||||||||||||
Sbjct: 1761 gatccttccatcacctcttc 1742



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>gb|AC171204.1| Mus musculus BAC clone RP23-312J21 from chromosome 9, complete sequence
          Length = 223399

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      acacacacacataaaataga 20
              ||||||||||||||||||||
Sbjct: 109983 acacacacacataaaataga 110002


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,435,990
Number of Sequences: 3902068
Number of extensions: 13435990
Number of successful extensions: 93189
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92628
Number of HSP's gapped (non-prelim): 561
length of query: 358
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 336
effective length of database: 17,147,199,772
effective search space: 5761459123392
effective search space used: 5761459123392
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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