ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl09a10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds Length = 2910 Score = 910 bits (459), Expect = 0.0 Identities = 501/511 (98%), Gaps = 3/511 (0%) Strand = Plus / Plus Query: 9 caccacagcgagctaacttagcaagcgtgccacactccccagagatcgagcgaagatgtt 68 |||| |||||||||||||||| ||||||||||||||||| ||||||||||| |||||| | Sbjct: 12 caccgcagcgagctaacttag-aagcgtgccacactccc-agagatcgagc-aagatgct 68 Query: 69 tggcgtcggcggcatcgtgagcgacctgacggggggcctccggggcgcccacctcaaggg 128 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 69 tggcgtcggcggcatcgtgagcgacttgacggggggcatccggggcgcccacctcaaggg 128 Query: 129 ctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgccaccgtcat 188 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 129 ctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcccacgtcat 188 Query: 189 ggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagctccaccaa 248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 189 ggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagctccaccaa 248 Query: 249 cgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacctggagcagtg 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 249 cgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacctggagcagtg 308 Query: 309 gctcctgccgacgaacctgccgttcatcaccaccggcgagaacaagttcgccgtcacctt 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 309 gctcctgccgacgaacctgccgttcatcaccaccggcgagaacaagttcgccgtcacctt 368 Query: 369 cgactggtcggtggacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgc 428 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 369 cgactggtcggtggacaagctgggggtgccgggggccatcatcgtcaagaacaaccacgc 428 Query: 429 ctccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggcaccatcgt 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 429 ctccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggcaccatcgt 488 Query: 489 cttcgtcgccaactcatgggtctacccgcag 519 ||||||||||||||||||||||||||||||| Sbjct: 489 cttcgtcgccaactcatgggtctacccgcag 519
>gb|AF457968.1| Zea mays clone cho1c.pk002.j23, mRNA sequence Length = 515 Score = 313 bits (158), Expect = 3e-82 Identities = 337/397 (84%), Gaps = 6/397 (1%) Strand = Plus / Plus Query: 121 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 180 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 114 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 173 Query: 181 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 240 |||||| | ||| || ||| |||| |||||||| || ||||||||||||||||||||| Sbjct: 174 accgtcgttgacagcatcagcgagttcctcggcaagggggtcacctgccagctcatcagc 233 Query: 241 tccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacctg 300 |||||| ||||||| ||||||||| |||||| ||| || ||||||||||||||| Sbjct: 234 tccaccctcgtcgacgccaacaacggcaaccgcgggcgggtcggggcggaggcgaacctg 293 Query: 301 gagcagtggctcctgccgacgaacctgccgttcatcaccaccggcgagaacaagttcgcc 360 ||||||||||| ||||| |||||||| | || ||||||||| |||||||| | Sbjct: 294 gagcagtggct------gacgagcctgccgtcgctgacgaccggcgagtccaagttcggc 347 Query: 361 gtcaccttcgactggtcggtggacaagctgggggtgccgggcgccatcatcgtcaagaac 420 ||||| ||||||||| |||||| |||||||| |||||||| ||| || ||||||||||| Sbjct: 348 gtcacgttcgactgggaggtggagaagctgggagtgccgggggccgtcgtcgtcaagaac 407 Query: 421 aaccacgcctccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggc 480 ||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct: 408 aaccacgccgccgagttcttcctcaagacaatcaccctcgacgacgtgcccggccgcggc 467 Query: 481 accatcgtcttcgtcgccaactcatgggtctacccgc 517 || || ||||||||||||||| ||||||||||||| Sbjct: 468 gccgtcaacttcgtcgccaactcctgggtctacccgc 504
>gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds Length = 2595 Score = 309 bits (156), Expect = 5e-81 Identities = 335/395 (84%), Gaps = 6/395 (1%) Strand = Plus / Plus Query: 121 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 180 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 52 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 111 Query: 181 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 240 |||||| | ||| || ||| |||| |||||||| || ||||||||||||||||||||| Sbjct: 112 accgtcgttgacagcatcagcgagttcctcggcaagggggtcacctgccagctcatcagc 171 Query: 241 tccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacctg 300 |||||| ||||||| ||||||||| |||||| ||| || ||||||||||||||| Sbjct: 172 tccaccctcgtcgacgccaacaacggcaaccgcgggcgggtcggggcggaggcgaacctg 231 Query: 301 gagcagtggctcctgccgacgaacctgccgttcatcaccaccggcgagaacaagttcgcc 360 ||||||||||| ||||| |||||||| | || ||||||||| |||||||| | Sbjct: 232 gagcagtggct------gacgagcctgccgtcgctgacgaccggcgagtccaagttcggc 285 Query: 361 gtcaccttcgactggtcggtggacaagctgggggtgccgggcgccatcatcgtcaagaac 420 ||||| ||||||||| |||||| |||||||| |||||||| ||| || ||||||||||| Sbjct: 286 gtcacgttcgactgggaggtggagaagctgggagtgccgggggccgtcgtcgtcaagaac 345 Query: 421 aaccacgcctccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggc 480 ||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct: 346 aaccacgccgccgagttcttcctcaagacaatcaccctcgacgacgtgcccggccgcggc 405 Query: 481 accatcgtcttcgtcgccaactcatgggtctaccc 515 || || ||||||||||||||| ||||||||||| Sbjct: 406 gccgtcaccttcgtcgccaactcctgggtctaccc 440
>gb|AF271894.1|AF271894 Zea mays lipoxygenase (LOX) mRNA, complete cds Length = 2845 Score = 230 bits (116), Expect = 4e-57 Identities = 161/176 (91%) Strand = Plus / Plus Query: 344 gcgagaacaagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgggcg 403 |||||||| ||||| |||||||||||||||| |||||| |||| ||| | ||||||| Sbjct: 290 gcgagaaccagttccgcgtcaccttcgactgggaggtggagaagcagggcatcccgggcg 349 Query: 404 ccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctcgaca 463 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 350 ccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctcaacg 409 Query: 464 acgtgcccggccgcggcaccatcgtcttcgtcgccaactcatgggtctacccgcag 519 |||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 410 acgtccccggccacggcaccatcgtcttcgtcgccaactcatggatctacccgcag 465 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Plus Query: 201 cgagctcctcggccgcggcgtcacctgccagctcatcagctccaccaacgtcgaccacaa 260 |||| |||||||||||||||||||||||||||| |||||||||||| |||||||| || Sbjct: 153 cgagttcctcggccgcggcgtcacctgccagcttatcagctccaccgtcgtcgaccctaa 212 Query: 261 caacggtgggcgcgggaaggtgggcgcggaggcgaacctggagcagtggct 311 |||||| ||||||||| ||||||||||||||| ||||||||||||||| Sbjct: 213 caacggcaaccgcgggaagttgggcgcggaggcgagcctggagcagtggct 263
>gb|AF465642.1| Zea mays Golden cross bantam-70 lipoxygenase gene, promoter region and partial cds Length = 3196 Score = 212 bits (107), Expect = 8e-52 Identities = 161/179 (89%) Strand = Plus / Plus Query: 341 ccggcgagaacaagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgg 400 |||||||| || ||||| |||||||||||||||| |||||| |||| || || |||| Sbjct: 2808 ccggcgaggaccagttccgcgtcaccttcgactgggaggtggagaagcacggcgtcccgg 2867 Query: 401 gcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctcg 460 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 2868 gcgccatcatcgtgaagaacaaccacgcctccgagttcttcctcaagaccatcaccatcg 2927 Query: 461 acaacgtgcccggccgcggcaccatcgtcttcgtcgccaactcatgggtctacccgcag 519 || |||| ||||||| |||| |||||||||||||||||||||||||||| ||||||||| Sbjct: 2928 acgacgtccccggccacggccccatcgtcttcgtcgccaactcatgggtgtacccgcag 2986 Score = 79.8 bits (40), Expect = 8e-12 Identities = 64/72 (88%) Strand = Plus / Plus Query: 185 tcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagctcca 244 ||||||||||| || |||| ||||||||||||||||||||||||| ||| ||||||||| Sbjct: 2387 tcatggacggcctcggcgagttcctcggccgcggcgtcacctgccaactcgtcagctcca 2446 Query: 245 ccaacgtcgacc 256 || |||||||| Sbjct: 2447 ccgtcgtcgacc 2458 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 271 cgcgggaaggtgggcgcggaggcgaacctggagcagtggctcctgc 316 |||||||||||||| |||||||| ||||||||||||||| |||| Sbjct: 2744 cgcgggaaggtgggtcaggaggcgagcctggagcagtggctgctgc 2789
>gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds Length = 5013 Score = 212 bits (107), Expect = 8e-52 Identities = 199/230 (86%), Gaps = 6/230 (2%) Strand = Plus / Plus Query: 286 gcggaggcgaacctggagcagtggctcctgccgacgaacctgccgttcatcaccaccggc 345 |||||||||||||||||||||||||| ||||| |||||||| | || |||||| Sbjct: 945 gcggaggcgaacctggagcagtggct------gacgagcctgccgtcgctgacgaccggc 998 Query: 346 gagaacaagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgggcgcc 405 ||| |||||||| |||||| ||||||||| |||||| |||||||| |||||||| ||| Sbjct: 999 gagtccaagttcggcgtcacgttcgactgggaggtggagaagctgggagtgccgggggcc 1058 Query: 406 atcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctcgacaac 465 || |||||||||||||||||||| ||||||||||||||||||| |||||||||||| || Sbjct: 1059 gtcgtcgtcaagaacaaccacgccgccgagttcttcctcaagacaatcaccctcgacgac 1118 Query: 466 gtgcccggccgcggcaccatcgtcttcgtcgccaactcatgggtctaccc 515 ||||||||||||||| || || ||||||||||||||| ||||||||||| Sbjct: 1119 gtgcccggccgcggcgccgtcaccttcgtcgccaactcctgggtctaccc 1168 Score = 117 bits (59), Expect = 4e-23 Identities = 116/135 (85%) Strand = Plus / Plus Query: 121 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 180 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 200 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 259 Query: 181 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 240 |||||| | ||| || ||| |||| |||||||| || ||||||||||||||||||||| Sbjct: 260 accgtcgttgacagcatcagcgagttcctcggcaagggggtcacctgccagctcatcagc 319 Query: 241 tccaccaacgtcgac 255 |||||| ||||||| Sbjct: 320 tccaccctcgtcgac 334
>ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2613 Score = 202 bits (102), Expect = 8e-49 Identities = 174/198 (87%) Strand = Plus / Plus Query: 114 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 173 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 42 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 101 Query: 174 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 233 ||||||||||||||| |||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 102 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 161 Query: 234 catcagctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggc 293 | |||||||| || |||||||| |||||| || | |||| |||||| ||||||| Sbjct: 162 cgtcagctcctccctcgtcgaccccaacaatgggaacagggggagggtggggacggaggc 221 Query: 294 gaacctggagcagtggct 311 || ||||||||||||||| Sbjct: 222 gagcctggagcagtggct 239 Score = 174 bits (88), Expect = 2e-40 Identities = 109/116 (93%) Strand = Plus / Plus Query: 400 ggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctc 459 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 322 ggcgccatcatcgtcaagaacaaccacgccgccgagttcttcctcaagaccatcaccctc 381 Query: 460 gacaacgtgcccggccgcggcaccatcgtcttcgtcgccaactcatgggtctaccc 515 |||||||| ||||||| |||| || ||||||||||||||||||| ||| ||||||| Sbjct: 382 gacaacgtccccggccacggcgccgtcgtcttcgtcgccaactcctggatctaccc 437
>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full insert sequence Length = 2928 Score = 202 bits (102), Expect = 8e-49 Identities = 174/198 (87%) Strand = Plus / Plus Query: 114 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 173 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 157 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 216 Query: 174 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 233 ||||||||||||||| |||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 217 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 276 Query: 234 catcagctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggc 293 | |||||||| || |||||||| |||||| || | |||| |||||| ||||||| Sbjct: 277 cgtcagctcctccctcgtcgaccccaacaatgggaacagggggagggtggggacggaggc 336 Query: 294 gaacctggagcagtggct 311 || ||||||||||||||| Sbjct: 337 gagcctggagcagtggct 354 Score = 174 bits (88), Expect = 2e-40 Identities = 109/116 (93%) Strand = Plus / Plus Query: 400 ggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctc 459 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 437 ggcgccatcatcgtcaagaacaaccacgccgccgagttcttcctcaagaccatcaccctc 496 Query: 460 gacaacgtgcccggccgcggcaccatcgtcttcgtcgccaactcatgggtctaccc 515 |||||||| ||||||| |||| || ||||||||||||||||||| ||| ||||||| Sbjct: 497 gacaacgtccccggccacggcgccgtcgtcttcgtcgccaactcctggatctaccc 552
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 188 bits (95), Expect = 1e-44 Identities = 131/143 (91%) Strand = Plus / Plus Query: 114 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 173 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 30023301 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 30023360 Query: 174 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 233 ||||||||||||||| |||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 30023361 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 30023420 Query: 234 catcagctccaccaacgtcgacc 256 | |||||||| || |||||||| Sbjct: 30023421 cgtcagctcctccctcgtcgacc 30023443 Score = 174 bits (88), Expect = 2e-40 Identities = 109/116 (93%) Strand = Plus / Plus Query: 400 ggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctc 459 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 30023659 ggcgccatcatcgtcaagaacaaccacgccgccgagttcttcctcaagaccatcaccctc 30023718 Query: 460 gacaacgtgcccggccgcggcaccatcgtcttcgtcgccaactcatgggtctaccc 515 |||||||| ||||||| |||| || ||||||||||||||||||| ||| ||||||| Sbjct: 30023719 gacaacgtccccggccacggcgccgtcgtcttcgtcgccaactcctggatctaccc 30023774 Score = 135 bits (68), Expect = 2e-28 Identities = 119/136 (87%) Strand = Plus / Plus Query: 121 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 180 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 27798757 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 27798816 Query: 181 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 240 |||||||| |||||| || |||| |||||||| |||||||||||||||||||||||| Sbjct: 27798817 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 27798876 Query: 241 tccaccaacgtcgacc 256 |||||| |||||||| Sbjct: 27798877 tccaccgccgtcgacc 27798892 Score = 133 bits (67), Expect = 6e-28 Identities = 120/137 (87%), Gaps = 3/137 (2%) Strand = Plus / Plus Query: 382 gacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttcttc 441 |||||||| || |||||||| |||||||||||||||||| ||||| | |||||||||| Sbjct: 27799413 gacaagctcggcgtgccgggggccatcatcgtcaagaaccaccacagcaacgagttcttc 27799472 Query: 442 ctcaagaccatcaccctcgacaacgtgcccggccg---cggcaccatcgtcttcgtcgcc 498 ||||||||||||||||||||| |||| |||||||| |||| || |||||||| ||||| Sbjct: 27799473 ctcaagaccatcaccctcgacgacgtccccggccgcgccggcgccgtcgtcttcctcgcc 27799532 Query: 499 aactcatgggtctaccc 515 ||||| ||||||||||| Sbjct: 27799533 aactcctgggtctaccc 27799549 Score = 83.8 bits (42), Expect = 5e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 430 tccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggcaccatcgtc 489 |||||||||||||||||||| ||||||||||| ||| |||||| |||||| ||||| Sbjct: 27816818 tccgagttcttcctcaagacgctcaccctcgacggcgtccccggcaagggcaccgtcgtc 27816877 Query: 490 ttcgtcgccaactcatgggtctaccc 515 |||||||||||||| ||| ||||||| Sbjct: 27816878 ttcgtcgccaactcgtggatctaccc 27816903 Score = 63.9 bits (32), Expect = 5e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 380 tggacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttct 439 ||||||||| || ||||| || ||||||||| |||||||| ||||| || |||||| Sbjct: 27758793 tggacaagcatggtgtgccaggggccatcatcatcaagaaccaccacagtaccaagttct 27758852 Query: 440 tcctcaagaccatcaccctc 459 |||||||||||||||||||| Sbjct: 27758853 tcctcaagaccatcaccctc 27758872 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 274 gggaaggtgggcgcggaggcgaacctggagcagtggct 311 ||||||||||| |||||||||| ||||||||||||||| Sbjct: 27799308 gggaaggtgggggcggaggcgagcctggagcagtggct 27799345 Score = 44.1 bits (22), Expect = 0.45 Identities = 34/38 (89%) Strand = Plus / Plus Query: 274 gggaaggtgggcgcggaggcgaacctggagcagtggct 311 |||| |||||| ||||||||| ||||||||||||||| Sbjct: 30023539 gggagggtggggacggaggcgagcctggagcagtggct 30023576 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 ggcgtcggcggcatcgtgag 89 |||||||||||||||||||| Sbjct: 24817033 ggcgtcggcggcatcgtgag 24817052
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 188 bits (95), Expect = 1e-44 Identities = 131/143 (91%) Strand = Plus / Minus Query: 114 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 173 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 84450 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 84391 Query: 174 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 233 ||||||||||||||| |||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 84390 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 84331 Query: 234 catcagctccaccaacgtcgacc 256 | |||||||| || |||||||| Sbjct: 84330 cgtcagctcctccctcgtcgacc 84308 Score = 174 bits (88), Expect = 2e-40 Identities = 109/116 (93%) Strand = Plus / Minus Query: 400 ggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctc 459 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 84092 ggcgccatcatcgtcaagaacaaccacgccgccgagttcttcctcaagaccatcaccctc 84033 Query: 460 gacaacgtgcccggccgcggcaccatcgtcttcgtcgccaactcatgggtctaccc 515 |||||||| ||||||| |||| || ||||||||||||||||||| ||| ||||||| Sbjct: 84032 gacaacgtccccggccacggcgccgtcgtcttcgtcgccaactcctggatctaccc 83977 Score = 44.1 bits (22), Expect = 0.45 Identities = 34/38 (89%) Strand = Plus / Minus Query: 274 gggaaggtgggcgcggaggcgaacctggagcagtggct 311 |||| |||||| ||||||||| ||||||||||||||| Sbjct: 84212 gggagggtggggacggaggcgagcctggagcagtggct 84175
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 188 bits (95), Expect = 1e-44 Identities = 131/143 (91%) Strand = Plus / Plus Query: 114 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 173 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 30114723 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 30114782 Query: 174 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 233 ||||||||||||||| |||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 30114783 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 30114842 Query: 234 catcagctccaccaacgtcgacc 256 | |||||||| || |||||||| Sbjct: 30114843 cgtcagctcctccctcgtcgacc 30114865 Score = 174 bits (88), Expect = 2e-40 Identities = 109/116 (93%) Strand = Plus / Plus Query: 400 ggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctc 459 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 30115081 ggcgccatcatcgtcaagaacaaccacgccgccgagttcttcctcaagaccatcaccctc 30115140 Query: 460 gacaacgtgcccggccgcggcaccatcgtcttcgtcgccaactcatgggtctaccc 515 |||||||| ||||||| |||| || ||||||||||||||||||| ||| ||||||| Sbjct: 30115141 gacaacgtccccggccacggcgccgtcgtcttcgtcgccaactcctggatctaccc 30115196 Score = 135 bits (68), Expect = 2e-28 Identities = 119/136 (87%) Strand = Plus / Plus Query: 121 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 180 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 27890081 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 27890140 Query: 181 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 240 |||||||| |||||| || |||| |||||||| |||||||||||||||||||||||| Sbjct: 27890141 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 27890200 Query: 241 tccaccaacgtcgacc 256 |||||| |||||||| Sbjct: 27890201 tccaccgccgtcgacc 27890216 Score = 133 bits (67), Expect = 6e-28 Identities = 120/137 (87%), Gaps = 3/137 (2%) Strand = Plus / Plus Query: 382 gacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttcttc 441 |||||||| || |||||||| |||||||||||||||||| ||||| | |||||||||| Sbjct: 27890737 gacaagctcggcgtgccgggggccatcatcgtcaagaaccaccacagcaacgagttcttc 27890796 Query: 442 ctcaagaccatcaccctcgacaacgtgcccggccg---cggcaccatcgtcttcgtcgcc 498 ||||||||||||||||||||| |||| |||||||| |||| || |||||||| ||||| Sbjct: 27890797 ctcaagaccatcaccctcgacgacgtccccggccgcgccggcgccgtcgtcttcctcgcc 27890856 Query: 499 aactcatgggtctaccc 515 ||||| ||||||||||| Sbjct: 27890857 aactcctgggtctaccc 27890873 Score = 83.8 bits (42), Expect = 5e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 430 tccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggcaccatcgtc 489 |||||||||||||||||||| ||||||||||| ||| |||||| |||||| ||||| Sbjct: 27908142 tccgagttcttcctcaagacgctcaccctcgacggcgtccccggcaagggcaccgtcgtc 27908201 Query: 490 ttcgtcgccaactcatgggtctaccc 515 |||||||||||||| ||| ||||||| Sbjct: 27908202 ttcgtcgccaactcgtggatctaccc 27908227 Score = 63.9 bits (32), Expect = 5e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 380 tggacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttct 439 ||||||||| || ||||| || ||||||||| |||||||| ||||| || |||||| Sbjct: 27850116 tggacaagcatggtgtgccaggggccatcatcatcaagaaccaccacagtaccaagttct 27850175 Query: 440 tcctcaagaccatcaccctc 459 |||||||||||||||||||| Sbjct: 27850176 tcctcaagaccatcaccctc 27850195 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 274 gggaaggtgggcgcggaggcgaacctggagcagtggct 311 ||||||||||| |||||||||| ||||||||||||||| Sbjct: 27890632 gggaaggtgggggcggaggcgagcctggagcagtggct 27890669 Score = 44.1 bits (22), Expect = 0.45 Identities = 34/38 (89%) Strand = Plus / Plus Query: 274 gggaaggtgggcgcggaggcgaacctggagcagtggct 311 |||| |||||| ||||||||| ||||||||||||||| Sbjct: 30114961 gggagggtggggacggaggcgagcctggagcagtggct 30114998 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 ggcgtcggcggcatcgtgag 89 |||||||||||||||||||| Sbjct: 24908356 ggcgtcggcggcatcgtgag 24908375
>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 Length = 2830 Score = 186 bits (94), Expect = 5e-44 Identities = 172/198 (86%) Strand = Plus / Plus Query: 114 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 173 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 139 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 198 Query: 174 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 233 ||||||||||||||| || || || ||||| |||||||||||||||||||||||||||| Sbjct: 199 cggcgccaccgtcatcgagcgcatctccgagttcctcggccgcggcgtcacctgccagct 258 Query: 234 catcagctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggc 293 | |||||||| || |||||||| |||||| || | |||| |||||| ||||||| Sbjct: 259 cgtcagctcctccctcgtcgaccccaacaatgggaacagggggagggtggggacggaggc 318 Query: 294 gaacctggagcagtggct 311 || ||||||||||||||| Sbjct: 319 gagcctggagcagtggct 336 Score = 174 bits (88), Expect = 2e-40 Identities = 109/116 (93%) Strand = Plus / Plus Query: 400 ggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctc 459 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 419 ggcgccatcatcgtcaagaacaaccacgccgccgagttcttcctcaagaccatcaccctc 478 Query: 460 gacaacgtgcccggccgcggcaccatcgtcttcgtcgccaactcatgggtctaccc 515 |||||||| ||||||| |||| || ||||||||||||||||||| ||| ||||||| Sbjct: 479 gacaacgtccccggccacggcgccgtcgtcttcgtcgccaactcctggatctaccc 534
>gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds Length = 2818 Score = 176 bits (89), Expect = 5e-41 Identities = 164/189 (86%) Strand = Plus / Plus Query: 121 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 180 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 123 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 182 Query: 181 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 240 ||| |||| |||||| || |||| |||||||| ||||||||||||||||| |||||| Sbjct: 183 accatcatcgacggcatcggcgagttcctcggcaagggcgtcacctgccagcttatcagc 242 Query: 241 tccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacctg 300 |||||| ||||||||| ||||||| || |||||||||||||||||||||||| | ||| Sbjct: 243 tccaccgccgtcgaccaagacaacggcggtcgcgggaaggtgggcgcggaggcggagctg 302 Query: 301 gagcagtgg 309 ||||||||| Sbjct: 303 gagcagtgg 311 Score = 123 bits (62), Expect = 6e-25 Identities = 142/168 (84%), Gaps = 3/168 (1%) Strand = Plus / Plus Query: 351 caagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgggcgccatcat 410 |||||||| | |||||||||||||| |||||| ||||| |||||||||||||||||| | Sbjct: 347 caagttcggcctcaccttcgactgggaggtggagaagctcggggtgccgggcgccatcgt 406 Query: 411 cgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctcgacaacgtgcc 470 |||||| ||| ||||| |||||||||| | || || |||||||||||| || |||| || Sbjct: 407 cgtcaacaactaccacagctccgagttcctgcttaaaaccatcaccctccacgacgtccc 466 Query: 471 cggccgc---ggcaccatcgtcttcgtcgccaactcatgggtctaccc 515 ||||||| |||| | || ||||||||||||||||||| ||||||| Sbjct: 467 cggccgcagcggcaacctcaccttcgtcgccaactcatggatctaccc 514
>ref|XM_469409.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2601 Score = 172 bits (87), Expect = 7e-40 Identities = 165/191 (86%) Strand = Plus / Plus Query: 121 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 180 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 52 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 111 Query: 181 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 240 |||||||| |||||| || |||| |||||||| |||||||||||||||||||||||| Sbjct: 112 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 171 Query: 241 tccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacctg 300 |||||| |||||||| |||||||| || ||||||||||| |||||||||| |||| Sbjct: 172 tccaccgccgtcgacccaaacaacggcaaccgggggaaggtgggggcggaggcgagcctg 231 Query: 301 gagcagtggct 311 ||||||||||| Sbjct: 232 gagcagtggct 242 Score = 133 bits (67), Expect = 6e-28 Identities = 120/137 (87%), Gaps = 3/137 (2%) Strand = Plus / Plus Query: 382 gacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttcttc 441 |||||||| || |||||||| |||||||||||||||||| ||||| | |||||||||| Sbjct: 310 gacaagctcggcgtgccgggggccatcatcgtcaagaaccaccacagcaacgagttcttc 369 Query: 442 ctcaagaccatcaccctcgacaacgtgcccggccg---cggcaccatcgtcttcgtcgcc 498 ||||||||||||||||||||| |||| |||||||| |||| || |||||||| ||||| Sbjct: 370 ctcaagaccatcaccctcgacgacgtccccggccgcgccggcgccgtcgtcttcctcgcc 429 Query: 499 aactcatgggtctaccc 515 ||||| ||||||||||| Sbjct: 430 aactcctgggtctaccc 446
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16 map S2606, complete sequence Length = 124140 Score = 135 bits (68), Expect = 2e-28 Identities = 119/136 (87%) Strand = Plus / Plus Query: 121 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 180 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 42887 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 42946 Query: 181 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 240 |||||||| |||||| || |||| |||||||| |||||||||||||||||||||||| Sbjct: 42947 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 43006 Query: 241 tccaccaacgtcgacc 256 |||||| |||||||| Sbjct: 43007 tccaccgccgtcgacc 43022 Score = 133 bits (67), Expect = 6e-28 Identities = 120/137 (87%), Gaps = 3/137 (2%) Strand = Plus / Plus Query: 382 gacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttcttc 441 |||||||| || |||||||| |||||||||||||||||| ||||| | |||||||||| Sbjct: 43543 gacaagctcggcgtgccgggggccatcatcgtcaagaaccaccacagcaacgagttcttc 43602 Query: 442 ctcaagaccatcaccctcgacaacgtgcccggccg---cggcaccatcgtcttcgtcgcc 498 ||||||||||||||||||||| |||| |||||||| |||| || |||||||| ||||| Sbjct: 43603 ctcaagaccatcaccctcgacgacgtccccggccgcgccggcgccgtcgtcttcctcgcc 43662 Query: 499 aactcatgggtctaccc 515 ||||| ||||||||||| Sbjct: 43663 aactcctgggtctaccc 43679 Score = 83.8 bits (42), Expect = 5e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 430 tccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggcaccatcgtc 489 |||||||||||||||||||| ||||||||||| ||| |||||| |||||| ||||| Sbjct: 60948 tccgagttcttcctcaagacgctcaccctcgacggcgtccccggcaagggcaccgtcgtc 61007 Query: 490 ttcgtcgccaactcatgggtctaccc 515 |||||||||||||| ||| ||||||| Sbjct: 61008 ttcgtcgccaactcgtggatctaccc 61033 Score = 63.9 bits (32), Expect = 5e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 380 tggacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttct 439 ||||||||| || ||||| || ||||||||| |||||||| ||||| || |||||| Sbjct: 2922 tggacaagcatggtgtgccaggggccatcatcatcaagaaccaccacagtaccaagttct 2981 Query: 440 tcctcaagaccatcaccctc 459 |||||||||||||||||||| Sbjct: 2982 tcctcaagaccatcaccctc 3001 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 274 gggaaggtgggcgcggaggcgaacctggagcagtggct 311 ||||||||||| |||||||||| ||||||||||||||| Sbjct: 43438 gggaaggtgggggcggaggcgagcctggagcagtggct 43475
>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence Length = 119329 Score = 135 bits (68), Expect = 2e-28 Identities = 119/136 (87%) Strand = Plus / Minus Query: 121 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 180 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 15136 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 15077 Query: 181 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 240 |||||||| |||||| || |||| |||||||| |||||||||||||||||||||||| Sbjct: 15076 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 15017 Query: 241 tccaccaacgtcgacc 256 |||||| |||||||| Sbjct: 15016 tccaccgccgtcgacc 15001 Score = 133 bits (67), Expect = 6e-28 Identities = 120/137 (87%), Gaps = 3/137 (2%) Strand = Plus / Minus Query: 382 gacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttcttc 441 |||||||| || |||||||| |||||||||||||||||| ||||| | |||||||||| Sbjct: 14480 gacaagctcggcgtgccgggggccatcatcgtcaagaaccaccacagcaacgagttcttc 14421 Query: 442 ctcaagaccatcaccctcgacaacgtgcccggccg---cggcaccatcgtcttcgtcgcc 498 ||||||||||||||||||||| |||| |||||||| |||| || |||||||| ||||| Sbjct: 14420 ctcaagaccatcaccctcgacgacgtccccggccgcgccggcgccgtcgtcttcctcgcc 14361 Query: 499 aactcatgggtctaccc 515 ||||| ||||||||||| Sbjct: 14360 aactcctgggtctaccc 14344 Score = 63.9 bits (32), Expect = 5e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 380 tggacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttct 439 ||||||||| || ||||| || ||||||||| |||||||| ||||| || |||||| Sbjct: 55101 tggacaagcatggtgtgccaggggccatcatcatcaagaaccaccacagtaccaagttct 55042 Query: 440 tcctcaagaccatcaccctc 459 |||||||||||||||||||| Sbjct: 55041 tcctcaagaccatcaccctc 55022 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 274 gggaaggtgggcgcggaggcgaacctggagcagtggct 311 ||||||||||| |||||||||| ||||||||||||||| Sbjct: 14585 gggaaggtgggggcggaggcgagcctggagcagtggct 14548
>gb|U83904.1|HVU83904 Hordeum vulgare lipoxygenase isoenzyme 1 (Lox:Hv1) gene, promoter region and partial cds Length = 5236 Score = 123 bits (62), Expect = 6e-25 Identities = 142/168 (84%), Gaps = 3/168 (1%) Strand = Plus / Plus Query: 351 caagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgggcgccatcat 410 |||||||| | |||||||||||||| |||||| ||||| |||||||||||||||||| | Sbjct: 4340 caagttcggcctcaccttcgactgggaggtggagaagctcggggtgccgggcgccatcgt 4399 Query: 411 cgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctcgacaacgtgcc 470 |||||| ||| ||||| |||||||||| | || || |||||||||||| || |||| || Sbjct: 4400 cgtcaacaactaccacagctccgagttcctgcttaaaaccatcaccctccacgacgtccc 4459 Query: 471 cggccgc---ggcaccatcgtcttcgtcgccaactcatgggtctaccc 515 ||||||| |||| | || ||||||||||||||||||| ||||||| Sbjct: 4460 cggccgcagcggcaacctcaccttcgtcgccaactcatggatctaccc 4507 Score = 115 bits (58), Expect = 1e-22 Identities = 109/126 (86%) Strand = Plus / Plus Query: 121 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 180 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 3566 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 3625 Query: 181 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 240 ||| |||| |||||| || |||| |||||||| ||||||||||||||||| |||||| Sbjct: 3626 accatcatcgacggcatcggcgagttcctcggcaagggcgtcacctgccagcttatcagc 3685 Query: 241 tccacc 246 |||||| Sbjct: 3686 tccacc 3691 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 260 acaacggtgggcgcgggaaggtgggcgcggaggcgaacctggagcagtgg 309 ||||||| || |||||||||||||||||||||||| | |||||||||||| Sbjct: 4255 acaacggcggtcgcgggaaggtgggcgcggaggcggagctggagcagtgg 4304
>gb|AF464895.1| Oryza sativa basmati-370 lipoxygenase (Lox) gene, partial cds Length = 1160 Score = 119 bits (60), Expect = 9e-24 Identities = 102/116 (87%) Strand = Plus / Plus Query: 400 ggcgccatcatcgtcaagaacaaccacgcctccgagttcttcctcaagaccatcaccctc 459 ||||||| || || ||||||| |||||||| ||| | || |||||||||||||||||||| Sbjct: 250 ggcgccagcaccggcaagaaccaccacgccgccggggtcgtcctcaagaccatcaccctc 309 Query: 460 gacaacgtgcccggccgcggcaccatcgtcttcgtcgccaactcatgggtctaccc 515 | |||||| ||||||| |||| || ||||||||||||||||||| ||||||||||| Sbjct: 310 gccaacgtccccggccacggcgccgtcgtcttcgtcgccaactcctgggtctaccc 365 Score = 117 bits (59), Expect = 4e-23 Identities = 89/99 (89%) Strand = Plus / Plus Query: 145 cgcaagaacgcgctcgacttcaacgacttcggcgccaccgtcatggacggcgtcaccgag 204 ||||||||||| |||||| ||||||||||||||||||||||| | | ||||| ||||| Sbjct: 1 cgcaagaacgccctcgacatcaacgacttcggcgccaccgtcctcgggcgcgtctccgag 60 Query: 205 ctcctcggccgcggcgtcacctgccagctcatcagctcc 243 ||||||||||||||||||||||||||||| |||||||| Sbjct: 61 ttcctcggccgcggcgtcacctgccagctcgtcagctcc 99
>ref|XM_469412.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2686 Score = 83.8 bits (42), Expect = 5e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 430 tccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggcaccatcgtc 489 |||||||||||||||||||| ||||||||||| ||| |||||| |||||| ||||| Sbjct: 185 tccgagttcttcctcaagacgctcaccctcgacggcgtccccggcaagggcaccgtcgtc 244 Query: 490 ttcgtcgccaactcatgggtctaccc 515 |||||||||||||| ||| ||||||| Sbjct: 245 ttcgtcgccaactcgtggatctaccc 270
>ref|XM_469411.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3165 Score = 83.8 bits (42), Expect = 5e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 430 tccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggcaccatcgtc 489 |||||||||||||||||||| ||||||||||| ||| |||||| |||||| ||||| Sbjct: 664 tccgagttcttcctcaagacgctcaccctcgacggcgtccccggcaagggcaccgtcgtc 723 Query: 490 ttcgtcgccaactcatgggtctaccc 515 |||||||||||||| ||| ||||||| Sbjct: 724 ttcgtcgccaactcgtggatctaccc 749
>gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual positional specificity lipoxygenase mRNA, complete cds Length = 3154 Score = 83.8 bits (42), Expect = 5e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 430 tccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggcaccatcgtc 489 |||||||||||||||||||| ||||||||||| ||| |||||| |||||| ||||| Sbjct: 658 tccgagttcttcctcaagacgctcaccctcgacggcgtccccggcaagggcaccgtcgtc 717 Query: 490 ttcgtcgccaactcatgggtctaccc 515 |||||||||||||| ||| ||||||| Sbjct: 718 ttcgtcgccaactcgtggatctaccc 743
>dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143O17, full insert sequence Length = 2851 Score = 83.8 bits (42), Expect = 5e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 430 tccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggcaccatcgtc 489 |||||||||||||||||||| ||||||||||| ||| |||||| |||||| ||||| Sbjct: 336 tccgagttcttcctcaagacgctcaccctcgacggcgtccccggcaagggcaccgtcgtc 395 Query: 490 ttcgtcgccaactcatgggtctaccc 515 |||||||||||||| ||| ||||||| Sbjct: 396 ttcgtcgccaactcgtggatctaccc 421
>dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143H13, full insert sequence Length = 3167 Score = 83.8 bits (42), Expect = 5e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 430 tccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggcaccatcgtc 489 |||||||||||||||||||| ||||||||||| ||| |||||| |||||| ||||| Sbjct: 665 tccgagttcttcctcaagacgctcaccctcgacggcgtccccggcaagggcaccgtcgtc 724 Query: 490 ttcgtcgccaactcatgggtctaccc 515 |||||||||||||| ||| ||||||| Sbjct: 725 ttcgtcgccaactcgtggatctaccc 750
>gb|AY103567.1| Zea mays PCO116252 mRNA sequence Length = 3135 Score = 79.8 bits (40), Expect = 8e-12 Identities = 76/88 (86%) Strand = Plus / Plus Query: 431 ccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggcaccatcgtct 490 ||||||||||||||||||| |||||||||| ||| || ||| |||||| |||||| Sbjct: 608 ccgagttcttcctcaagacgctcaccctcgagggcgtcccaggcaagggcaccgtcgtct 667 Query: 491 tcgtcgccaactcatgggtctacccgca 518 ||||||||||||| |||||||||||||| Sbjct: 668 tcgtcgccaactcgtgggtctacccgca 695
>ref|XM_469401.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2726 Score = 63.9 bits (32), Expect = 5e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 380 tggacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttct 439 ||||||||| || ||||| || ||||||||| |||||||| ||||| || |||||| Sbjct: 302 tggacaagcatggtgtgccaggggccatcatcatcaagaaccaccacagtaccaagttct 361 Query: 440 tcctcaagaccatcaccctc 459 |||||||||||||||||||| Sbjct: 362 tcctcaagaccatcaccctc 381
>dbj|AB099850.1| Oryza sativa (japonica cultivar-group) r9-LOX1 mRNA for 9-lipoxigenase, complete cds Length = 2988 Score = 63.9 bits (32), Expect = 5e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 380 tggacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttct 439 ||||||||| || ||||| || ||||||||| |||||||| ||||| || |||||| Sbjct: 368 tggacaagcatggtgtgccaggggccatcatcatcaagaaccaccacagtaccaagttct 427 Query: 440 tcctcaagaccatcaccctc 459 |||||||||||||||||||| Sbjct: 428 tcctcaagaccatcaccctc 447
>dbj|AK103565.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132L12, full insert sequence Length = 2830 Score = 63.9 bits (32), Expect = 5e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 380 tggacaagctgggggtgccgggcgccatcatcgtcaagaacaaccacgcctccgagttct 439 ||||||||| || ||||| || ||||||||| |||||||| ||||| || |||||| Sbjct: 376 tggacaagcatggtgtgccaggggccatcatcatcaagaaccaccacagtaccaagttct 435 Query: 440 tcctcaagaccatcaccctc 459 |||||||||||||||||||| Sbjct: 436 tcctcaagaccatcaccctc 455
>gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, complete cds Length = 3003 Score = 54.0 bits (27), Expect = 5e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 429 ctccgagttcttcctcaagaccatcaccctcgacaacgtgcccggccgcggcaccatcgt 488 |||||||| | | |||||||| |||||||| || ||| |||||| |||||| |||| Sbjct: 505 ctccgagtacctgctcaagacgctcaccctccacggcgtccccggcaagggcaccgtcgt 564 Query: 489 cttcgtcgccaactcatgggtctaccc 515 ||||||||||||||| ||| ||||||| Sbjct: 565 cttcgtcgccaactcctggatctaccc 591
>gb|AC109929.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0093J03, complete sequence Length = 200626 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 433 gagttcttcctcaagaccatcaccctcgaca 463 ||||||||| |||| |||||||||||||||| Sbjct: 134348 gagttcttcgtcaacaccatcaccctcgaca 134378
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 433 gagttcttcctcaagaccatcaccctcgaca 463 ||||||||| |||| |||||||||||||||| Sbjct: 20827287 gagttcttcgtcaacaccatcaccctcgaca 20827317
>dbj|AK102084.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082M03, full insert sequence Length = 2930 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 433 gagttcttcctcaagaccatcaccctcgaca 463 ||||||||| |||| |||||||||||||||| Sbjct: 417 gagttcttcgtcaacaccatcaccctcgaca 447
>dbj|AK073570.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046P13, full insert sequence Length = 3010 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 433 gagttcttcctcaagaccatcaccctcgaca 463 ||||||||| |||| |||||||||||||||| Sbjct: 417 gagttcttcgtcaacaccatcaccctcgaca 447
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 433 gagttcttcctcaagaccatcaccctcgaca 463 ||||||||| |||| |||||||||||||||| Sbjct: 21137522 gagttcttcgtcaacaccatcaccctcgaca 21137552
>gb|AE005807.1| Caulobacter crescentus CB15 section 133 of 359 of the complete genome Length = 8803 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 153 cgcgctcgacttcaacgacttcggcg 178 ||||| |||||||||||||||||||| Sbjct: 4469 cgcgcacgacttcaacgacttcggcg 4494
>ref|NM_003028.1| Homo sapiens Src homology 2 domain containing adaptor protein B (SHB), mRNA Length = 2306 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 98 cggggggcctccggggcgccc 118 ||||||||||||||||||||| Sbjct: 469 cggggggcctccggggcgccc 449
>gb|AY596511.1| Helicosporidium sp. ex Simulium jonesii gamma-carbonic anhydrase mRNA, partial cds Length = 775 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 174 cggcgccaccgtcatggacggcgtcaccg 202 ||||||||| ||||||||||||| ||||| Sbjct: 400 cggcgccacggtcatggacggcgccaccg 428
>emb|X75342.1|HSSHB H.sapiens SHB mRNA Length = 2306 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 98 cggggggcctccggggcgccc 118 ||||||||||||||||||||| Sbjct: 469 cggggggcctccggggcgccc 449
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 451 atcaccctcgacaacgtgcc 470 |||||||||||||||||||| Sbjct: 301337 atcaccctcgacaacgtgcc 301318
>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0088L13 map near C50029S, complete sequence Length = 129900 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 ggcgtcggcggcatcgtgag 89 |||||||||||||||||||| Sbjct: 52268 ggcgtcggcggcatcgtgag 52287
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 357 cgccgtcaccttcgactggtcggtggac 384 ||||| ||||||||| |||||||||||| Sbjct: 3465594 cgccggcaccttcgaatggtcggtggac 3465621
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 gctcctgccgacgaacctgc 328 |||||||||||||||||||| Sbjct: 137505 gctcctgccgacgaacctgc 137486
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 323 acctgccgttcatcaccaccggcg 346 ||||||||||||||| |||||||| Sbjct: 288875 acctgccgttcatcatcaccggcg 288852
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 323 acctgccgttcatcaccaccggcg 346 ||||||||||||||| |||||||| Sbjct: 153202 acctgccgttcatcatcaccggcg 153225
>gb|AY316746.1| Rhizobium sp. NGR234 megaplasmid 2 contig 2, complete sequence Length = 236455 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 cggcggcatcgtgagcgacctgac 98 ||||||||||| |||||||||||| Sbjct: 205636 cggcggcatcgagagcgacctgac 205659
>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12 Length = 323450 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 cggcggcatcgtgagcgacctgac 98 ||||||||||| |||||||||||| Sbjct: 80122 cggcggcatcgagagcgacctgac 80099
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 ggtgccgggcgccatcatcg 412 |||||||||||||||||||| Sbjct: 608859 ggtgccgggcgccatcatcg 608840
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 agctcctcggccgcggcgtc 222 |||||||||||||||||||| Sbjct: 1962239 agctcctcggccgcggcgtc 1962220
>gb|AC124918.5| Rattus norvegicus 4 BAC CH230-4H1 (Children's Hospital Oakland Research Institute) complete sequence Length = 228052 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 agctcatcagctccaccaac 249 |||||||||||||||||||| Sbjct: 82121 agctcatcagctccaccaac 82102
>ref|XM_967239.1| PREDICTED: Tribolium castaneum similar to CG11980-PC, isoform C (LOC661050), mRNA Length = 1156 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 caccaacgtcgaccacaaca 262 |||||||||||||||||||| Sbjct: 239 caccaacgtcgaccacaaca 220
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 gccgttcatcaccaccggcg 346 |||||||||||||||||||| Sbjct: 1867059 gccgttcatcaccaccggcg 1867040
>emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0116P11 of library OSJNBb from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128559 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 ggcgtcggcggcatcgtgag 89 |||||||||||||||||||| Sbjct: 103984 ggcgtcggcggcatcgtgag 104003
>gb|AC079160.5| Homo sapiens BAC clone RP11-176K15 from 4, complete sequence Length = 147727 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 acctggagcagtggctcctg 315 |||||||||||||||||||| Sbjct: 78731 acctggagcagtggctcctg 78750
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 173 tcggcgccaccgtcatggacggcg 196 ||||||||| |||||||||||||| Sbjct: 2990742 tcggcgccatcgtcatggacggcg 2990719
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 70 ggcgtcggcggcatcgtgagcgac 93 |||||||||||||||||| ||||| Sbjct: 5079435 ggcgtcggcggcatcgtgcgcgac 5079412
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 474 ccgcggcaccatcgtcttcg 493 |||||||||||||||||||| Sbjct: 2565281 ccgcggcaccatcgtcttcg 2565300 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 70 ggcgtcggcggcatcgtgagcgac 93 |||||||||||||||||| ||||| Sbjct: 590306 ggcgtcggcggcatcgtgcgcgac 590329 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 143 tgcgcaagaacgcgctcgacttca 166 ||||||||||| |||||||||||| Sbjct: 206796 tgcgcaagaacccgctcgacttca 206773
>dbj|AK109329.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-B01, full insert sequence Length = 1556 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 ggcgtcggcggcatcgtgag 89 |||||||||||||||||||| Sbjct: 613 ggcgtcggcggcatcgtgag 594
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 7.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 189 ggacggcgtcaccgagctcctcggccgcggcg 220 ||||||||| | |||| ||||||||||||||| Sbjct: 1448865 ggacggcgtgatcgagttcctcggccgcggcg 1448834
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 70 ggcgtcggcggcatcgtgagcgac 93 |||||||||||||||||| ||||| Sbjct: 657733 ggcgtcggcggcatcgtgcgcgac 657756 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,038,990 Number of Sequences: 3902068 Number of extensions: 3038990 Number of successful extensions: 67589 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65806 Number of HSP's gapped (non-prelim): 1768 length of query: 519 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 496 effective length of database: 17,143,297,704 effective search space: 8503075661184 effective search space used: 8503075661184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
